RLG00000003451

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005420
Physical Location & Seq
Forward (+)
48637885 .. 48642232
4348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003451

Sequence Viewer

Length: 825 bp
ATGCGGTTGTTCCCTTTGAACTCGAGCCCGAGCTCGAGCTCTAGCTCTAGCGTAGAGAAGGAGCAACAGACTGATCGGAAACGGACTCGCGCCATTTTGTACCTCAATGTCTACGATCTCACCCCTGTAAATAACTATCTTTACTGGTTCGGATTTGGGGTCTTCCACTCTGGCATCGAAGTGCATGGCATGGAGTATGGCTTTGGAGCCCATGAGTATCCTAGCAGTGGAGTTTTTGAGGTCGAACCAAGAAGTTGCCCTGGCTTCATATTCAGAAGGTCAGTCCTGCTGGGCAGCACTGATATGTCCCGTACAGAATTACGCTCATTTATGGAACAGCTTTCTGGAAAGTATCATGGTGATACCTATCATTTAATTGCCAAGAATTGCAATCATTTCACTGATGAAGTCTGTTTGCGGCTAACTGGAAAACCTATCCCTGGATGGGTAAACCGGCTGGCACGAGTAGGTTCTTTCTGTAATTGTCTTCTGCCAGAAAACATTCATTTATCAGCAGTCAGACATCTTCCTGATCATCCGCCATATTCTGAAGATGATGATGATGATGGATCAGAGTCCATTGCTTCATCTGGAACAGGAAGTGGTGAGGATTCAAATCATCACCTGCTGAATGCACCAATCGGGGATGTAGCTTTCGTGAAGGAAACACCAATGAACATGCTGCTGCCGCAGCGATGTGACAACAGAGGCTCCATCGAGACCCCTTTCCCAAGCAATACACGATTAGCAAGCGGCATTGCCAGCTTAGATATTATGCCGTGCAGGGCCAGTGCAAAGCGATTAAGGCCAAATGGTGGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

275

Amino Acids

30.42

Weight (kDa)

6.11

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 34 - 167 5e-52 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 633
AccB7I CCANNNNNTGG 1 cut(s) 815
AccI GTMKAC 1 cut(s) 111
AccII CGCG 1 cut(s) 90
AciI CCGC 5 cut(s) 4, 418, 539, 689, 753
AclWI GGATC 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 2 cut(s) 101, 313
AfiI CCNNNNNNNGG 4 cut(s) 227, 440, 445, 815
AgsI TTSAA 2 cut(s) 19, 615
AjnI CCWGG 2 cut(s) 259, 439
AluBI AGCT 6 cut(s) 33, 39, 45, 340, 653, 765
AluI AGCT 6 cut(s) 33, 39, 45, 340, 653, 765
Alw21I GWGCWC 2 cut(s) 35, 41
Alw26I GTCTC 1 cut(s) 713
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 3 cut(s) 22, 28, 34
AoxI GGCC 2 cut(s) 786, 806
ApeKI GCWGC 4 cut(s) 294, 682, 685, 691
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 786
AsuHPI GGTGA 4 cut(s) 112, 371, 614, 617
AvaI CYCGRG 3 cut(s) 22, 28, 34
BanII GRGCYC 4 cut(s) 29, 35, 41, 211
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 2 cut(s) 154, 479
Bbv12I GWGCWC 2 cut(s) 35, 41
BbvI GCAGC 4 cut(s) 306, 669, 672, 703
BccI CCATC 3 cut(s) 438, 560, 722
BceAI ACGGC 1 cut(s) 763
BciT130I CCWGG 2 cut(s) 261, 441
BciVI GTATCC 1 cut(s) 228
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 1 cut(s) 713
BfaI CTAG 3 cut(s) 42, 48, 222
BfuAI ACCTGC 1 cut(s) 633
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 7 cut(s) 295, 419, 683, 686, 689, 692, 754
BlsI GCNGC 7 cut(s) 296, 420, 684, 687, 690, 693, 755
Bme1390I CCNGG 2 cut(s) 261, 441
BmeT110I CYCGRG 3 cut(s) 22, 28, 34
BmgT120I GGNCC 1 cut(s) 786
BmiI GGNNCC 2 cut(s) 208, 712
BmrFI CCNGG 2 cut(s) 261, 441
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 154, 479
BsaBI GATNNNNATC 2 cut(s) 366, 615
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 259, 439
BsaXI ACNNNNNCTCC 2 cut(s) 695, 725
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 440, 445, 815
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 3 cut(s) 149, 430, 789
Bse3DI GCAATG 2 cut(s) 579, 756
Bse8I GATNNNNATC 2 cut(s) 366, 615
BseBI CCWGG 2 cut(s) 261, 441
BseDI CCNNGG 2 cut(s) 259, 439
BseGI GGATG 3 cut(s) 449, 535, 652
BseJI GATNNNNATC 2 cut(s) 366, 615
BseLI CCNNNNNNNGG 4 cut(s) 227, 440, 445, 815
BseMI GCAATG 2 cut(s) 579, 756
BseNI ACTGG 3 cut(s) 149, 430, 789
BseXI GCAGC 4 cut(s) 306, 669, 672, 703
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 802
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 788, 808
BsiHKAI GWGCWC 2 cut(s) 35, 41
BsiHKCI CYCGRG 3 cut(s) 22, 28, 34
BsiSI CCGG 1 cut(s) 454
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 4 cut(s) 227, 440, 445, 815
BsmAI GTCTC 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 2 cut(s) 788, 808
Bso31I GGTCTC 1 cut(s) 713
BsoBI CYCGRG 3 cut(s) 22, 28, 34
Bsp1286I GDGCHC 4 cut(s) 29, 35, 41, 211
Bsp143I GATC 4 cut(s) 73, 115, 532, 569
BspACI CCGC 5 cut(s) 4, 418, 539, 689, 753
BspANI GGCC 2 cut(s) 788, 808
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 208, 712
BspMI ACCTGC 1 cut(s) 633
BspPI GGATC 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 713
BsrDI GCAATG 2 cut(s) 579, 756
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 3 cut(s) 149, 430, 789
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 259, 439
BssMI GATC 4 cut(s) 73, 115, 532, 569
BssSI CACGAG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 261, 441
BstC8I GCNNGC 3 cut(s) 459, 751, 763
BstDEI CTNAG 1 cut(s) 766
BstF5I GGATG 3 cut(s) 449, 535, 652
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 4 cut(s) 76, 118, 535, 572
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 4 cut(s) 73, 115, 532, 569
BstMWI GCNNNNNNNGC 4 cut(s) 688, 691, 762, 805
BstNI CCWGG 2 cut(s) 261, 441
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 259, 439
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 4 cut(s) 306, 669, 672, 703
BstV2I GAAGAC 2 cut(s) 154, 479
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 788, 808
BtgZI GCGATG 1 cut(s) 709
BtsCI GGATG 3 cut(s) 449, 535, 652
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 4 cut(s) 232, 297, 399, 796
BveI ACCTGC 1 cut(s) 633
Cac8I GCNNGC 3 cut(s) 459, 751, 763
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 786
Csp6I GTAC 2 cut(s) 100, 312
CviAII CATG 5 cut(s) 185, 190, 212, 356, 679
CviQI GTAC 2 cut(s) 100, 312
DdeI CTNAG 1 cut(s) 766
DpnI GATC 4 cut(s) 75, 117, 534, 571
DpnII GATC 4 cut(s) 73, 115, 532, 569
EciI GGCGGA 1 cut(s) 528
Ecl136II GAGCTC 2 cut(s) 33, 39
Eco24I GRGCYC 4 cut(s) 29, 35, 41, 211
Eco31I GGTCTC 1 cut(s) 713
Eco53kI GAGCTC 2 cut(s) 33, 39
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 3 cut(s) 22, 28, 34
EcoICRI GAGCTC 2 cut(s) 33, 39
EcoRII CCWGG 2 cut(s) 259, 439
EcoT38I GRGCYC 4 cut(s) 29, 35, 41, 211
FaeI CATG 5 cut(s) 188, 193, 215, 359, 682
FaqI GGGAC 1 cut(s) 292
FatI CATG 5 cut(s) 184, 189, 211, 355, 678
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 7 cut(s) 295, 419, 683, 686, 689, 692, 754
FokI GGATG 3 cut(s) 456, 522, 659
FriOI GRGCYC 4 cut(s) 29, 35, 41, 211
Fsp4HI GCNGC 7 cut(s) 295, 419, 683, 686, 689, 692, 754
FspBI CTAG 3 cut(s) 42, 48, 222
GlaI GCGC 1 cut(s) 91
GluI GCNGC 7 cut(s) 295, 419, 683, 686, 689, 692, 754
GsaI CCCAGC 1 cut(s) 293
HaeIII GGCC 2 cut(s) 788, 808
HapII CCGG 1 cut(s) 454
HhaI GCGC 1 cut(s) 92
Hin1II CATG 5 cut(s) 188, 193, 215, 359, 682
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 3 cut(s) 85, 575, 611
HpaII CCGG 1 cut(s) 454
HphI GGTGA 4 cut(s) 112, 371, 614, 617
Hpy166II GTNNAC 2 cut(s) 112, 451
Hpy188I TCNGA 6 cut(s) 78, 152, 275, 521, 550, 574
Hpy188III TCNNGA 5 cut(s) 345, 530, 591, 658, 718
Hpy8I GTNNAC 2 cut(s) 112, 451
HpyAV CCTTC 3 cut(s) 52, 270, 655
HpyCH4V TGCA 5 cut(s) 184, 390, 635, 783, 794
HpyF10VI GCNNNNNNNGC 4 cut(s) 688, 691, 762, 805
HpyF3I CTNAG 1 cut(s) 766
Hsp92II CATG 5 cut(s) 188, 193, 215, 359, 682
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 4 cut(s) 73, 115, 532, 569
LmnI GCTCC 3 cut(s) 61, 206, 716
Lsp1109I GCAGC 4 cut(s) 306, 669, 672, 703
LweI GCATC 1 cut(s) 183
MaeI CTAG 3 cut(s) 42, 48, 222
MaeIII GTNAC 1 cut(s) 698
MalI GATC 4 cut(s) 75, 117, 534, 571
MboI GATC 4 cut(s) 73, 115, 532, 569
MboII GAAGA 4 cut(s) 154, 479, 518, 563
MhlI GDGCHC 4 cut(s) 29, 35, 41, 211
MluCI AATT 4 cut(s) 317, 375, 385, 481
MlyI GAGTC 2 cut(s) 79, 584
MnlI CCTC 4 cut(s) 113, 232, 601, 701
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 2 cut(s) 374, 803
MslI CAYNNNNRTG 2 cut(s) 179, 302
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 2 cut(s) 261, 441
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 2 cut(s) 261, 441
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 4 cut(s) 688, 691, 762, 805
NdeII GATC 4 cut(s) 73, 115, 532, 569
NlaIII CATG 5 cut(s) 188, 193, 215, 359, 682
NlaIV GGNNCC 2 cut(s) 208, 712
NmuCI GTSAC 1 cut(s) 698
NspI RCATGY 1 cut(s) 682
PaeR7I CTCGAG 2 cut(s) 22, 34
PaqCI CACCTGC 1 cut(s) 633
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 815
PkrI GCNGC 7 cut(s) 296, 420, 684, 687, 690, 693, 755
PleI GAGTC 2 cut(s) 79, 583
PpsI GAGTC 2 cut(s) 79, 583
Psp124BI GAGCTC 2 cut(s) 35, 41
Psp6I CCWGG 2 cut(s) 259, 439
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 2 cut(s) 259, 439
PspN4I GGNNCC 2 cut(s) 208, 712
PspPI GGNCC 1 cut(s) 786
PspXI VCTCGAGB 2 cut(s) 22, 34
RsaI GTAC 2 cut(s) 101, 313
RsaNI GTAC 2 cut(s) 100, 312
RseI CAYNNNNRTG 2 cut(s) 179, 302
SacI GAGCTC 2 cut(s) 35, 41
SaqAI TTAA 2 cut(s) 374, 803
SatI GCNGC 7 cut(s) 295, 419, 683, 686, 689, 692, 754
Sau3AI GATC 4 cut(s) 73, 115, 532, 569
Sau96I GGNCC 1 cut(s) 786
SchI GAGTC 2 cut(s) 79, 584
ScrFI CCNGG 2 cut(s) 261, 441
SduI GDGCHC 4 cut(s) 29, 35, 41, 211
SfaNI GCATC 1 cut(s) 183
Sfr274I CTCGAG 2 cut(s) 22, 34
SlaI CTCGAG 2 cut(s) 22, 34
SmiMI CAYNNNNRTG 2 cut(s) 179, 302
SmlI CTYRAG 2 cut(s) 22, 34
SmoI CTYRAG 2 cut(s) 22, 34
Sse9I AATT 4 cut(s) 317, 375, 385, 481
SsiI CCGC 5 cut(s) 4, 418, 539, 689, 753
SspMI CTAG 3 cut(s) 42, 48, 222
SstI GAGCTC 2 cut(s) 35, 41
StyD4I CCNGG 2 cut(s) 259, 439
TaqI TCGA 5 cut(s) 23, 35, 177, 243, 717
TasI AATT 4 cut(s) 317, 375, 385, 481
TauI GCSGC 3 cut(s) 421, 691, 756
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 2 cut(s) 374, 803
Tru9I TTAA 2 cut(s) 374, 803
TscAI CASTG 4 cut(s) 232, 304, 406, 796
TseFI GTSAC 1 cut(s) 698
TseI GCWGC 4 cut(s) 294, 682, 685, 691
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 5 cut(s) 256, 420, 494, 576, 689
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 4 cut(s) 232, 304, 406, 796
Van91I CCANNNNNTGG 1 cut(s) 815
XceI RCATGY 1 cut(s) 682
XhoI CTCGAG 2 cut(s) 22, 34
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 3 cut(s) 42, 48, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.