Rh7DG222100

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005420
Physical Location & Seq
Reverse (-)
21583481 .. 21589935
6455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG222100.1

Sequence Viewer

Length: 531 bp
ATGCGGTTGTTCCCTTTGAACTCGAGCCCGAGCTCGAGCTCTAGCTCTAGCGTAGAGAAGGAGCAGCAGACTGATCGGAAAAGGACTCGCGCCCATTTGTACCTCAATGTCTACGATCTCACCCCTGTAAATAACTATCTTTACTGGTTCGGATTTGGGGTCTTCCACTCTGGCATCGAAGTGCATGGCATGGAGTATGGCTTTGGAGCCCATGAGTATCCTAGCAGTGGAGTTTTTGAGGTCGAACCAAGAAGTTGCCCTGGCTTCATATTCAGAAGGTCTGTCCTGCTGGGCAGCACTGATATGTCTCGTACAGAATTACGCTCATTTATGGAACAGCTTTCTGGAAAGTATCATGGCGATACCTATCATTTAATTGCCAAGAATTGCAACCATTTCACTGATGAAGTCTGTTTGCGGCTAACTGGAAAACCTATCCCTGGATGGGTAAACCGGCTGGCACGAGTAGGTGAGATTAAAAATCCTCTACTTCAATATCCACAGGACCTAACAAGCTACCTTGATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

176

Amino Acids

20.12

Weight (kDa)

7.05

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 33 - 158 7.2e-51 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 111
AccII CGCG 1 cut(s) 90
AciI CCGC 2 cut(s) 4, 418
AfaI GTAC 2 cut(s) 101, 313
AfiI CCNNNNNNNGG 3 cut(s) 227, 440, 445
AgsI TTSAA 2 cut(s) 19, 494
AjnI CCWGG 2 cut(s) 259, 439
AluBI AGCT 5 cut(s) 33, 39, 45, 340, 516
AluI AGCT 5 cut(s) 33, 39, 45, 340, 516
Alw21I GWGCWC 2 cut(s) 35, 41
Alw26I GTCTC 1 cut(s) 312
Ama87I CYCGRG 3 cut(s) 22, 28, 34
ApeKI GCWGC 2 cut(s) 64, 294
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 112, 482
AvaI CYCGRG 3 cut(s) 22, 28, 34
AvaII GGWCC 1 cut(s) 505
BanII GRGCYC 4 cut(s) 29, 35, 41, 211
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 2 cut(s) 35, 41
BbvI GCAGC 2 cut(s) 76, 306
BccI CCATC 1 cut(s) 438
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 2 cut(s) 261, 441
BciVI GTATCC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 3 cut(s) 42, 48, 222
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 3 cut(s) 65, 295, 419
BlsI GCNGC 3 cut(s) 66, 296, 420
Bme1390I CCNGG 2 cut(s) 261, 441
Bme18I GGWCC 1 cut(s) 505
BmeT110I CYCGRG 3 cut(s) 22, 28, 34
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 261, 441
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 259, 439
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 440, 445
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 2 cut(s) 149, 430
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 2 cut(s) 261, 441
BseDI CCNNGG 2 cut(s) 259, 439
BseGI GGATG 1 cut(s) 449
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 3 cut(s) 227, 440, 445
BseNI ACTGG 2 cut(s) 149, 430
BseXI GCAGC 2 cut(s) 76, 306
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 35, 41
BsiHKCI CYCGRG 3 cut(s) 22, 28, 34
BsiSI CCGG 1 cut(s) 454
BslI CCNNNNNNNGG 3 cut(s) 227, 440, 445
BsmAI GTCTC 1 cut(s) 312
BsoBI CYCGRG 3 cut(s) 22, 28, 34
Bsp1286I GDGCHC 4 cut(s) 29, 35, 41, 211
Bsp143I GATC 2 cut(s) 73, 115
BspACI CCGC 2 cut(s) 4, 418
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 2 cut(s) 149, 430
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 259, 439
BssMI GATC 2 cut(s) 73, 115
BssSI CACGAG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 261, 441
BstC8I GCNNGC 1 cut(s) 459
BstF5I GGATG 1 cut(s) 449
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 76, 118
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 2 cut(s) 73, 115
BstNI CCWGG 2 cut(s) 261, 441
BstSCI CCNGG 2 cut(s) 259, 439
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 76, 306
BstV2I GAAGAC 1 cut(s) 154
BsuI GTATCC 1 cut(s) 228
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 3 cut(s) 232, 297, 399
Cac8I GCNNGC 1 cut(s) 459
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 505
Csp6I GTAC 2 cut(s) 100, 312
CviAII CATG 4 cut(s) 185, 190, 212, 356
CviQI GTAC 2 cut(s) 100, 312
DpnI GATC 2 cut(s) 75, 117
DpnII GATC 2 cut(s) 73, 115
Ecl136II GAGCTC 2 cut(s) 33, 39
Eco24I GRGCYC 4 cut(s) 29, 35, 41, 211
Eco47I GGWCC 1 cut(s) 505
Eco53kI GAGCTC 2 cut(s) 33, 39
Eco88I CYCGRG 3 cut(s) 22, 28, 34
EcoICRI GAGCTC 2 cut(s) 33, 39
EcoO109I RGGNCCY 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 259, 439
EcoT38I GRGCYC 4 cut(s) 29, 35, 41, 211
FaeI CATG 4 cut(s) 188, 193, 215, 359
FaiI YATR 8 cut(s) 186, 191, 198, 213, 269, 305, 332, 357
FatI CATG 4 cut(s) 184, 189, 211, 355
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 65, 295, 419
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 4 cut(s) 29, 35, 41, 211
Fsp4HI GCNGC 3 cut(s) 65, 295, 419
FspBI CTAG 3 cut(s) 42, 48, 222
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 65, 295, 419
GsaI CCCAGC 1 cut(s) 293
HapII CCGG 1 cut(s) 454
HhaI GCGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 188, 193, 215, 359
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 454
HphI GGTGA 2 cut(s) 112, 482
Hpy166II GTNNAC 2 cut(s) 112, 451
Hpy188I TCNGA 3 cut(s) 78, 152, 275
Hpy188III TCNNGA 1 cut(s) 345
Hpy8I GTNNAC 2 cut(s) 112, 451
HpyAV CCTTC 2 cut(s) 52, 270
HpyCH4V TGCA 2 cut(s) 184, 390
Hsp92II CATG 4 cut(s) 188, 193, 215, 359
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 2 cut(s) 73, 115
LmnI GCTCC 2 cut(s) 61, 206
Lsp1109I GCAGC 2 cut(s) 76, 306
LweI GCATC 1 cut(s) 183
MaeI CTAG 3 cut(s) 42, 48, 222
MalI GATC 2 cut(s) 75, 117
MboI GATC 2 cut(s) 73, 115
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 4 cut(s) 29, 35, 41, 211
MluCI AATT 3 cut(s) 317, 375, 385
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 3 cut(s) 113, 232, 495
MseI TTAA 2 cut(s) 374, 477
MslI CAYNNNNRTG 2 cut(s) 179, 302
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 2 cut(s) 261, 441
MvaI CCWGG 2 cut(s) 261, 441
MvnI CGCG 1 cut(s) 90
NdeII GATC 2 cut(s) 73, 115
NlaIII CATG 4 cut(s) 188, 193, 215, 359
NlaIV GGNNCC 1 cut(s) 208
PaeR7I CTCGAG 2 cut(s) 22, 34
PkrI GCNGC 3 cut(s) 66, 296, 420
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 505
Psp124BI GAGCTC 2 cut(s) 35, 41
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 2 cut(s) 259, 439
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 2 cut(s) 259, 439
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 505
PspPPI RGGWCCY 1 cut(s) 505
PspXI VCTCGAGB 2 cut(s) 22, 34
RsaI GTAC 2 cut(s) 101, 313
RsaNI GTAC 2 cut(s) 100, 312
RseI CAYNNNNRTG 2 cut(s) 179, 302
SacI GAGCTC 2 cut(s) 35, 41
SaqAI TTAA 2 cut(s) 374, 477
SatI GCNGC 3 cut(s) 65, 295, 419
Sau3AI GATC 2 cut(s) 73, 115
Sau96I GGNCC 1 cut(s) 505
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 261, 441
SduI GDGCHC 4 cut(s) 29, 35, 41, 211
SfaNI GCATC 1 cut(s) 183
Sfr274I CTCGAG 2 cut(s) 22, 34
SinI GGWCC 1 cut(s) 505
SlaI CTCGAG 2 cut(s) 22, 34
SmiMI CAYNNNNRTG 2 cut(s) 179, 302
SmlI CTYRAG 2 cut(s) 22, 34
SmoI CTYRAG 2 cut(s) 22, 34
Sse9I AATT 3 cut(s) 317, 375, 385
SsiI CCGC 2 cut(s) 4, 418
SspMI CTAG 3 cut(s) 42, 48, 222
SstI GAGCTC 2 cut(s) 35, 41
StyD4I CCNGG 2 cut(s) 259, 439
TaqI TCGA 4 cut(s) 23, 35, 177, 243
TasI AATT 3 cut(s) 317, 375, 385
TauI GCSGC 1 cut(s) 421
Tru1I TTAA 2 cut(s) 374, 477
Tru9I TTAA 2 cut(s) 374, 477
TscAI CASTG 3 cut(s) 232, 304, 406
TseI GCWGC 2 cut(s) 64, 294
TspDTI ATGAA 2 cut(s) 256, 420
TspRI CASTG 3 cut(s) 232, 304, 406
VpaK11BI GGWCC 1 cut(s) 505
XhoI CTCGAG 2 cut(s) 22, 34
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 3 cut(s) 42, 48, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.