Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005420

Physical Location & Seq

Genomic Coordinates Forward (+)

5055942 .. 5061245

Gene Structure 5304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCGGTTGTTTCCTTTGAGCTTAAGCCCAAGCTCGACCGCCAGAGCAGACAAGGAGCTCACTGATCGGAAAAAAAATCGCGCCCATTTGTACCTCAATGTCTACGATCTCACGCCTGTGAACAACTACCTTTACTGGGTTGGATTCGGGATCTTCCACTCCGGCATAGAAGTTCATGGCTTGGAGTATGGCTTTGGAGCCCATGAGTACCCCAGCAGTGGGGTTTTTGAGGTAGAACCAAGAAGTTGTCCTGGCTTCATCTTCAGAAAGTCAGTCCTGGTGGGCAGCACTGATATGTCTCGCTCAGAATTCCGGTCATTTATGGAGAACCTTTCTGGAAAGTATCATGGAGATACCTATCATTTAATTGCCAAGAATTGCAACCATTTCACTGATGAAGTTTGTATGCGGCTAACTGGAAAAACTATACCTGGATGGGTAAATCGGCTAGCCCGAGTAGGTTCTTTCTGCAACTGTCTTCTTCCAGAAAACATTCAAATTTCAGCAGTGAGACATCTTCCTGACCACCCGACATATTCTGACGAGGATGGTGACGACGGATCAGAATCTATTGCATCATCTGGAACAGCAGCAAGTGAGGAGGGGCCAAATCATCATCTCCTGAATGTACCGAGTGGTGATGTAGCTTTCGTGAAGGAAAAACCTCCGAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

226

Amino Acids

25.07

Weight (kDa)

6.11

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17486 AT4G17486 AT5G47310
fragaria_vesca	FvH4_5g19770 FvH4_5g19770 FvH4_5g19770 FvH4_5g19770 FvH4_5g19770 FvH4_5g19770
malus_domestica	MD04G1058600.v1.1 MD06G1052200.v1.1
prunus_persica	Prupe.5G062400_v2.0.a1 Prupe.5G062400_v2.0.a1 Prupe.5G062400_v2.0.a1
pyrus_communis	pycom04g05250
rosa_chinensis	RchiOBHm_Chr7g0204551
rosa_laevigata	RLG00000003451
rosa_multiflora	Rmu_ssc0000443.1_g000034
rosa_roxburghii	Rroxscaffold_3G00253000
rosa_rugosa	Rorug07G0085000 Rorug07G0085100 Rorug07G0085100 Rorug07G0085100 Rorug07G0085100
rosa_samantha	Rh7AG214400 Rh7BG211900 Rh7CG227500 Rh7DG222100
rosa_wichuraiana	Rw7G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	81
AciI	CCGC	3 cut(s)	4, 39, 409
AclWI	GGATC	2 cut(s)	158, 568
AcsI	RAATTY	2 cut(s)	308, 498
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	3 cut(s)	92, 209, 630
AfiI	CCNNNNNNNGG	3 cut(s)	136, 218, 219
AflII	CTTAAG	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	497
AjnI	CCWGG	3 cut(s)	250, 276, 430
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	21, 33, 58, 647
AluI	AGCT	4 cut(s)	21, 33, 58, 647
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	303, 505
AlwI	GGATC	2 cut(s)	158, 568
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	1 cut(s)	605
ApeKI	GCWGC	2 cut(s)	285, 590
ApoI	RAATTY	2 cut(s)	308, 498
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	605
AsuHPI	GGTGA	2 cut(s)	563, 650
AsuNHI	GCTAGC	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	453
BanII	GRGCYC	2 cut(s)	60, 202
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	297, 602
BccI	CCATC	2 cut(s)	429, 542
BciT130I	CCWGG	3 cut(s)	252, 278, 432
BcoDI	GTCTC	2 cut(s)	303, 505
BfaI	CTAG	1 cut(s)	449
BfrI	CTTAAG	1 cut(s)	22
BisI	GCNGC	3 cut(s)	286, 410, 591
BlsI	GCNGC	3 cut(s)	287, 411, 592
Bme1390I	CCNGG	3 cut(s)	252, 278, 432
BmeT110I	CYCGRG	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	2 cut(s)	199, 606
BmrFI	CCNGG	3 cut(s)	252, 278, 432
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	584
BmtI	GCTAGC	1 cut(s)	452
BmuI	ACTGGG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	470
BsaBI	GATNNNNATC	2 cut(s)	357, 565
BsaJI	CCNNGG	1 cut(s)	668
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 218, 219
Bse1I	ACTGG	2 cut(s)	140, 421
Bse8I	GATNNNNATC	2 cut(s)	357, 565
BseBI	CCWGG	3 cut(s)	252, 278, 432
BseDI	CCNNGG	1 cut(s)	668
BseGI	GGATG	2 cut(s)	440, 553
BseJI	GATNNNNATC	2 cut(s)	357, 565
BseLI	CCNNNNNNNGG	3 cut(s)	136, 218, 219
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	140, 421
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	2 cut(s)	297, 602
BseYI	CCCAGC	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	607
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	162, 313
BslI	CCNNNNNNNGG	3 cut(s)	136, 218, 219
BsmAI	GTCTC	2 cut(s)	303, 505
BsnI	GGCC	1 cut(s)	607
BsoBI	CYCGRG	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	60, 202
Bsp143I	GATC	4 cut(s)	64, 106, 150, 560
BspACI	CCGC	3 cut(s)	4, 39, 409
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	199, 606
BspOI	GCTAGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	158, 568
BspTI	CTTAAG	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	140, 421
BssECI	CCNNGG	1 cut(s)	668
BssMI	GATC	4 cut(s)	64, 106, 150, 560
Bst2UI	CCWGG	3 cut(s)	252, 278, 432
Bst4CI	ACNGT	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	440, 553
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	4 cut(s)	67, 109, 153, 563
BstMAI	GTCTC	2 cut(s)	303, 505
BstMBI	GATC	4 cut(s)	64, 106, 150, 560
BstMCI	CGRYCG	1 cut(s)	39
BstNI	CCWGG	3 cut(s)	252, 278, 432
BstSCI	CCNGG	3 cut(s)	250, 276, 430
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	297, 602
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	607
BtsCI	GGATG	2 cut(s)	440, 553
BtsI	GCAGTG	2 cut(s)	223, 513
BtsIMutI	CAGTG	5 cut(s)	60, 223, 288, 390, 513
Cac8I	GCNNGC	1 cut(s)	450
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	605
Csp6I	GTAC	3 cut(s)	91, 208, 629
CviAII	CATG	3 cut(s)	176, 203, 347
CviQI	GTAC	3 cut(s)	91, 208, 629
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	4 cut(s)	66, 108, 152, 562
DpnII	GATC	4 cut(s)	64, 106, 150, 560
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	60, 202
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	58
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	3 cut(s)	250, 276, 430
EcoT38I	GRGCYC	2 cut(s)	60, 202
FaeI	CATG	3 cut(s)	179, 206, 350
FatI	CATG	3 cut(s)	175, 202, 346
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	286, 410, 591
FokI	GGATG	2 cut(s)	447, 560
FriOI	GRGCYC	2 cut(s)	60, 202
Fsp4HI	GCNGC	3 cut(s)	286, 410, 591
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	3 cut(s)	286, 410, 591
GsaI	CCCAGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	607
HapII	CCGG	2 cut(s)	162, 313
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	179, 206, 350
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	144, 566
HpaII	CCGG	2 cut(s)	162, 313
HphI	GGTGA	2 cut(s)	563, 650
Hpy166II	GTNNAC	2 cut(s)	103, 121
Hpy188I	TCNGA	6 cut(s)	69, 266, 307, 541, 565, 669
Hpy188III	TCNNGA	7 cut(s)	148, 336, 485, 521, 582, 622, 652
Hpy8I	GTNNAC	2 cut(s)	103, 121
Hpy99I	CGWCG	1 cut(s)	560
HpyAV	CCTTC	1 cut(s)	649
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4V	TGCA	3 cut(s)	381, 471, 575
HpyF3I	CTNAG	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	179, 206, 350
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	64, 106, 150, 560
LmnI	GCTCC	2 cut(s)	55, 197
Lsp1109I	GCAGC	2 cut(s)	297, 602
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	4 cut(s)	66, 108, 152, 562
MboI	GATC	4 cut(s)	64, 106, 150, 560
MboII	GAAGA	5 cut(s)	145, 253, 470, 473, 509
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	60, 202
MluCI	AATT	4 cut(s)	308, 366, 376, 498
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	7 cut(s)	104, 223, 538, 592, 595, 663, 675
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	2 cut(s)	23, 365
MslI	CAYNNNNRTG	2 cut(s)	116, 293
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	2 cut(s)	162, 313
MspR9I	CCNGG	3 cut(s)	252, 278, 432
MvaI	CCWGG	3 cut(s)	252, 278, 432
MvnI	CGCG	1 cut(s)	81
NdeII	GATC	4 cut(s)	64, 106, 150, 560
NheI	GCTAGC	1 cut(s)	448
NlaIII	CATG	3 cut(s)	179, 206, 350
NlaIV	GGNNCC	2 cut(s)	199, 606
NmuCI	GTSAC	1 cut(s)	551
OliI	CACNNNNGTG	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	144, 566
PkrI	GCNGC	3 cut(s)	287, 411, 592
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	3 cut(s)	250, 276, 430
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	3 cut(s)	250, 276, 430
PspN4I	GGNNCC	2 cut(s)	199, 606
PspPI	GGNCC	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	3 cut(s)	92, 209, 630
RsaNI	GTAC	3 cut(s)	91, 208, 629
RseI	CAYNNNNRTG	2 cut(s)	116, 293
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	23, 365
SatI	GCNGC	3 cut(s)	286, 410, 591
Sau3AI	GATC	4 cut(s)	64, 106, 150, 560
Sau96I	GGNCC	1 cut(s)	605
ScrFI	CCNGG	3 cut(s)	252, 278, 432
SduI	GDGCHC	2 cut(s)	60, 202
SfaNI	GCATC	1 cut(s)	584
SmiMI	CAYNNNNRTG	2 cut(s)	116, 293
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	4 cut(s)	308, 366, 376, 498
SsiI	CCGC	3 cut(s)	4, 39, 409
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	3 cut(s)	250, 276, 430
TaaI	ACNGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	35
TasI	AATT	4 cut(s)	308, 366, 376, 498
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	2 cut(s)	144, 566
Tru1I	TTAA	2 cut(s)	23, 365
Tru9I	TTAA	2 cut(s)	23, 365
TscAI	CASTG	5 cut(s)	67, 223, 295, 397, 513
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	2 cut(s)	285, 590
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	164, 247, 411
TspGWI	ACGGA	1 cut(s)	573
TspRI	CASTG	5 cut(s)	67, 223, 295, 397, 513
Vha464I	CTTAAG	1 cut(s)	22
XapI	RAATTY	2 cut(s)	308, 498
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.