AT4G17650

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011040
Physical Location & Seq
Forward (+)
9827467 .. 9829768
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17650.1

Sequence Viewer

Length: 771 bp
ATGCCACCGTTTATGTCTGGTCTCAGAGCTGTATCTTCCTTACTTTCATGTCGAAACGCGATTAGCAGGAAACTCGTTAGTCGTTCTGGGATCCCTCGAGGGAGTTTTGTATCAGATCAAATTAGGAGATTTGGTTCTCTTTCCGGCGTCGAGAGATGTTCTTCTAATTGGTTGATGTCCAATGATGACGCTAGAGTCTCTTTCCGGAGATTGCCTGGCTCTGTGAGCCTACTTCAGAGACGGCATTTTCTGGGGTGCGGAGATGGGGAAGAAGGTGGTGGTGAGTTATCAAAGATCTATGAAGAGAGACGTGTCTTAGGGTATACTCCGGAGCAAATGTTTAACGTAGTTGCAGCTGTAGACTTGTACCATGGATTTGTTCCTTGGTGTCAGCGCTCTGAGGTTCTTAAAGAATACCCTGATGGGTCATTTGATGCTGAATTGGAGATTGGTTTCAAGTTTCTTGTTGAGAGTTACATTTCCCATGTCGAATCCGAGAGGCCGAAATGGATTAAGACTACAGCGAGGGACACTGGCCTGTTTGACCATTTGATAAACCTCTGGCAATTTAAGCCAGGGCCCATTCCTGGAACCTGCGACCTTCACTTCCATGTAGATTTCAAATTCAATTCACCTCTCTATCGCCAGGTGGCGTCAATGTTCTTCAAGGAGGTAGCATCAAGACTTGTGGGGGCATTCAGTGATCGATGCCGACTAGTGTATGGTCCAGGAGTCCGAGTAGATGAAAACGCATATGAGCAAAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

256

Amino Acids

29.03

Weight (kDa)

8.52

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 107 - 233 1.6e-24 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AbsI CCTCGAGG 1 cut(s) 96
Acc36I ACCTGC 1 cut(s) 602
AccI GTMKAC 2 cut(s) 323, 360
AccII CGCG 1 cut(s) 59
AccIII TCCGGA 2 cut(s) 204, 328
AciI CCGC 1 cut(s) 258
AclWI GGATC 2 cut(s) 85, 98
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 2 cut(s) 147, 653
AfaI GTAC 1 cut(s) 368
AfeI AGCGCT 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 310
AgsI TTSAA 4 cut(s) 457, 622, 628, 667
AhlI ACTAGT 1 cut(s) 715
AjiI CACGTC 1 cut(s) 311
AjnI CCWGG 5 cut(s) 214, 574, 586, 645, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AloI GAACNNNNNNTCC 2 cut(s) 118, 150
AluBI AGCT 3 cut(s) 29, 356, 767
AluI AGCT 3 cut(s) 29, 356, 767
Alw26I GTCTC 4 cut(s) 26, 202, 232, 301
AlwI GGATC 2 cut(s) 85, 98
Ama87I CYCGRG 1 cut(s) 96
Aor13HI TCCGGA 2 cut(s) 204, 328
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 3 cut(s) 500, 535, 578
ApaI GGGCCC 1 cut(s) 582
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 623
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 578, 579, 725
AsuHPI GGTGA 2 cut(s) 293, 624
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 582
BamHI GGATCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 365
BccI CCATC 2 cut(s) 257, 416
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 5 cut(s) 216, 576, 588, 647, 729
BcoDI GTCTC 4 cut(s) 26, 202, 232, 301
BcuI ACTAGT 1 cut(s) 715
BfaI CTAG 2 cut(s) 192, 716
BfmI CTRYAG 2 cut(s) 357, 519
BfoI RGCGCY 1 cut(s) 397
BfuAI ACCTGC 1 cut(s) 602
BglII AGATCT 1 cut(s) 294
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 5 cut(s) 216, 576, 588, 647, 729
Bme18I GGWCC 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 96
BmgBI CACGTC 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 578, 579, 725
BmiI GGNNCC 3 cut(s) 92, 580, 592
BmrFI CCNGG 5 cut(s) 216, 576, 588, 647, 729
BmsI GCATC 3 cut(s) 424, 686, 698
Bsa29I ATCGAT 1 cut(s) 706
BsaHI GRCGYC 2 cut(s) 147, 653
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 370, 383, 575
BsaWI WCCGGW 2 cut(s) 204, 328
BsaXI ACNNNNNCTCC 6 cut(s) 118, 148, 323, 353, 723, 753
Bsc4I CCNNNNNNNGG 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 538
BseAI TCCGGA 2 cut(s) 204, 328
BseBI CCWGG 5 cut(s) 216, 576, 588, 647, 729
BseCI ATCGAT 1 cut(s) 706
BseDI CCNNGG 3 cut(s) 370, 383, 575
BseLI CCNNNNNNNGG 1 cut(s) 587
BseMII CTCAG 2 cut(s) 37, 390
BseNI ACTGG 1 cut(s) 538
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 3 cut(s) 502, 537, 580
BshVI ATCGAT 1 cut(s) 706
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 3 cut(s) 144, 205, 329
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 587
BsmAI GTCTC 4 cut(s) 26, 202, 232, 301
BsmBI CGTCTC 2 cut(s) 232, 301
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 695
BsnI GGCC 3 cut(s) 502, 537, 580
Bso31I GGTCTC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 96
Bsp120I GGGCCC 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 582
Bsp13I TCCGGA 2 cut(s) 204, 328
Bsp143I GATC 4 cut(s) 90, 115, 294, 703
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 1 cut(s) 258
BspANI GGCC 3 cut(s) 502, 537, 580
BspCNI CTCAG 2 cut(s) 36, 391
BspDI ATCGAT 1 cut(s) 706
BspEI TCCGGA 2 cut(s) 204, 328
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 3 cut(s) 92, 580, 592
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 2 cut(s) 85, 98
BspTNI GGTCTC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 3 cut(s) 370, 383, 575
BssMI GATC 4 cut(s) 90, 115, 294, 703
BssNAI GTATAC 1 cut(s) 324
BssNI GRCGYC 2 cut(s) 147, 653
BssT1I CCWWGG 2 cut(s) 370, 383
Bst1107I GTATAC 1 cut(s) 324
Bst2UI CCWGG 5 cut(s) 216, 576, 588, 647, 729
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 297
BstACI GRCGYC 2 cut(s) 147, 653
BstDEI CTNAG 3 cut(s) 23, 316, 399
BstDSI CCRYGG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 4 cut(s) 93, 118, 297, 706
BstMAI GTCTC 4 cut(s) 26, 202, 232, 301
BstMBI GATC 4 cut(s) 90, 115, 294, 703
BstMWI GCNNNNNNNGC 2 cut(s) 225, 571
BstNI CCWGG 5 cut(s) 216, 576, 588, 647, 729
BstSCI CCNGG 5 cut(s) 214, 574, 586, 645, 727
BstSFI CTRYAG 2 cut(s) 357, 519
BstSLI GKGCMC 1 cut(s) 582
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 365
BstX2I RGATCY 2 cut(s) 90, 294
BstYI RGATCY 2 cut(s) 90, 294
BstZ17I GTATAC 1 cut(s) 324
Bsu15I ATCGAT 1 cut(s) 706
BsuRI GGCC 3 cut(s) 502, 537, 580
BsuTUI ATCGAT 1 cut(s) 706
BtgI CCRYGG 1 cut(s) 370
BtrI CACGTC 1 cut(s) 311
BtsIMutI CAGTG 2 cut(s) 531, 706
BveI ACCTGC 1 cut(s) 602
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 3 cut(s) 578, 579, 725
ClaI ATCGAT 1 cut(s) 706
CseI GACGC 3 cut(s) 136, 197, 642
Csp6I GTAC 1 cut(s) 367
CspCI CAANNNNNGTGG 2 cut(s) 669, 704
CviAII CATG 4 cut(s) 48, 371, 485, 611
CviJI RGCY 9 cut(s) 29, 219, 228, 356, 502, 537, 574, 580, 767
CviKI_1 RGCY 9 cut(s) 29, 219, 228, 356, 502, 537, 574, 580, 767
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 3 cut(s) 23, 316, 399
DpnI GATC 4 cut(s) 92, 117, 296, 705
DpnII GATC 4 cut(s) 90, 115, 294, 703
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 370, 383
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 725
Eco47III AGCGCT 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 578
EcoRII CCWGG 5 cut(s) 214, 574, 586, 645, 727
EcoT14I CCWWGG 2 cut(s) 370, 383
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 370, 383
Esp3I CGTCTC 2 cut(s) 232, 301
FaeI CATG 4 cut(s) 51, 374, 488, 614
FaqI GGGAC 1 cut(s) 542
FatI CATG 4 cut(s) 47, 370, 484, 610
FauNDI CATATG 1 cut(s) 754
FblI GTMKAC 2 cut(s) 323, 360
Fnu4HI GCNGC 1 cut(s) 354
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 2 cut(s) 192, 716
GlaI GCGC 1 cut(s) 395
GluI GCNGC 1 cut(s) 354
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 3 cut(s) 502, 537, 580
HapII CCGG 3 cut(s) 144, 205, 329
HgaI GACGC 3 cut(s) 136, 197, 642
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 2 cut(s) 147, 653
Hin1II CATG 4 cut(s) 51, 374, 488, 614
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HinfI GANTC 3 cut(s) 195, 491, 732
HpaII CCGG 3 cut(s) 144, 205, 329
HphI GGTGA 2 cut(s) 293, 624
Hpy166II GTNNAC 2 cut(s) 324, 361
Hpy188I TCNGA 6 cut(s) 26, 115, 237, 400, 496, 737
Hpy188III TCNNGA 4 cut(s) 151, 205, 329, 681
Hpy8I GTNNAC 2 cut(s) 324, 361
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 266, 611
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4IV ACGT 2 cut(s) 310, 345
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 571
HpyF3I CTNAG 3 cut(s) 23, 316, 399
HpySE526I ACGT 2 cut(s) 310, 345
Hsp92I GRCGYC 2 cut(s) 147, 653
Hsp92II CATG 4 cut(s) 51, 374, 488, 614
HspAI GCGC 1 cut(s) 394
Kpn2I TCCGGA 2 cut(s) 204, 328
Kzo9I GATC 4 cut(s) 90, 115, 294, 703
LmnI GCTCC 1 cut(s) 331
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 3 cut(s) 424, 686, 698
MaeI CTAG 2 cut(s) 192, 716
MaeII ACGT 2 cut(s) 310, 345
MaeIII GTNAC 1 cut(s) 473
MalI GATC 4 cut(s) 92, 117, 296, 705
MboI GATC 4 cut(s) 90, 115, 294, 703
MboII GAAGA 5 cut(s) 27, 153, 281, 314, 655
MflI RGATCY 2 cut(s) 90, 294
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 6 cut(s) 120, 166, 440, 566, 623, 628
MlyI GAGTC 2 cut(s) 204, 741
MnlI CCTC 8 cut(s) 92, 105, 394, 492, 519, 569, 645, 664
MroI TCCGGA 2 cut(s) 204, 328
MseI TTAA 4 cut(s) 342, 408, 513, 570
MslI CAYNNNNRTG 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 3 cut(s) 144, 205, 329
MspR9I CCNGG 5 cut(s) 216, 576, 588, 647, 729
Mva1269I GAATGC 1 cut(s) 695
MvaI CCWGG 5 cut(s) 216, 576, 588, 647, 729
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 225, 571
NcoI CCATGG 1 cut(s) 370
NdeI CATATG 1 cut(s) 754
NdeII GATC 4 cut(s) 90, 115, 294, 703
NlaIII CATG 4 cut(s) 51, 374, 488, 614
NlaIV GGNNCC 3 cut(s) 92, 580, 592
PaeR7I CTCGAG 1 cut(s) 96
PctI GAATGC 1 cut(s) 695
PfeI GAWTC 1 cut(s) 491
PfoI TCCNGGA 2 cut(s) 586, 727
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 2 cut(s) 203, 740
PpsI GAGTC 2 cut(s) 203, 740
Psp6I CCWGG 5 cut(s) 214, 574, 586, 645, 727
PspGI CCWGG 5 cut(s) 214, 574, 586, 645, 727
PspN4I GGNNCC 3 cut(s) 92, 580, 592
PspOMI GGGCCC 1 cut(s) 578
PspPI GGNCC 3 cut(s) 578, 579, 725
PspXI VCTCGAGB 1 cut(s) 96
PsuI RGATCY 2 cut(s) 90, 294
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 4 cut(s) 342, 408, 513, 570
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 4 cut(s) 90, 115, 294, 703
Sau96I GGNCC 3 cut(s) 578, 579, 725
SchI GAGTC 2 cut(s) 204, 741
ScrFI CCNGG 5 cut(s) 216, 576, 588, 647, 729
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 3 cut(s) 424, 686, 698
SfcI CTRYAG 2 cut(s) 357, 519
Sfr274I CTCGAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 725
SlaI CTCGAG 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SpeI ACTAGT 1 cut(s) 715
Sse9I AATT 6 cut(s) 120, 166, 440, 566, 623, 628
SsiI CCGC 1 cut(s) 258
SspMI CTAG 2 cut(s) 192, 716
StyD4I CCNGG 5 cut(s) 214, 574, 586, 645, 727
StyI CCWWGG 2 cut(s) 370, 383
TaaI ACNGT 1 cut(s) 9
TaiI ACGT 2 cut(s) 313, 348
TaqI TCGA 5 cut(s) 52, 97, 150, 489, 706
TasI AATT 6 cut(s) 120, 166, 440, 566, 623, 628
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 4 cut(s) 342, 408, 513, 570
Tru9I TTAA 4 cut(s) 342, 408, 513, 570
TscAI CASTG 2 cut(s) 538, 706
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 36, 315, 759
TspRI CASTG 2 cut(s) 538, 706
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 96
XmiI GTMKAC 2 cut(s) 323, 360
XspI CTAG 2 cut(s) 192, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.