MD08G1101200.v1.1

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0011040
Physical Location & Seq
Forward (+)
8510835 .. 8513454
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1101200.v1.1.491

Sequence Viewer

Length: 732 bp
ATGCCGCCGTTCTGGTCGAGCACGACCTCGAAGGCGGTGAGGTCCTTGCACTCCCGGAAAATTGGTCCCAGGTATCTGGTCCGGTCCGGCCGGAAATTTGACCAGATTCGATGCTTTAGTAGCATTGCAGGCATAGAAACCCCTTCGTCATCGGTCCACAAATGGACCGCCGATTCCCAGCTGGATTTCAATTACAGGTCACGGAGGCAATTTCTCGGCTGCGGCGACGGCGAGGAAGGCGGCGTATTATCCAAAGTCTATGAAGAGAGGCGCGTATTGGGGTATTCTCCGGAGCAGTTATACGATGTGGTTGCTGCGGTAGACTTGTATCATGGTTTCGTTCCCTGGTGTCAGCGGTCTACCATAATTAAAACCTATCCTGATGGATCATTTGATGCTGAGCTCGAGATTGGGTTTAAATTTCTTGTTGAAAGTTACGTCTCCCATGTCGAATTAGAGAGACCAAAGCGTATAAAGACCACTGTGTCAAATAGTTCCCTTTTCGATCATCTCATAAACATCTGGGAATTCAATCCGGGGCCAGTTCCAGGATCTTGCAGCCTTTATTTCTTGGTGGATTTTAAGTTCCAGTCGCCACTTTACCGACAGGTGGCATCGGTATTCTTTAAGGAGGTCGTCTCTAAGCTTGTTGGTTCATTTAATGAGCGATGCCGTTTGATATATGGACCAGGAGTTCGAGTTCTTGAAAACTCATATGGACAAAGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

244

Amino Acids

27.73

Weight (kDa)

9.04

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 94 - 220 8.2e-22 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 484
AccI GTMKAC 2 cut(s) 321, 359
AccII CGCG 1 cut(s) 273
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 7 cut(s) 5, 35, 168, 222, 240, 317, 355
AclWI GGATC 2 cut(s) 394, 559
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 3 cut(s) 95, 419, 527
AfiI CCNNNNNNNGG 2 cut(s) 548, 610
AgsI TTSAA 4 cut(s) 190, 431, 532, 707
AjnI CCWGG 4 cut(s) 68, 344, 547, 688
AloI GAACNNNNNNTCC 6 cut(s) 569, 601, 678, 684, 710, 716
AluBI AGCT 3 cut(s) 181, 403, 646
AluI AGCT 3 cut(s) 181, 403, 646
Alw21I GWGCWC 2 cut(s) 23, 405
Alw26I GTCTC 3 cut(s) 445, 454, 643
AlwI GGATC 2 cut(s) 394, 559
Ama87I CYCGRG 1 cut(s) 404
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 2 cut(s) 88, 539
ApeKI GCWGC 3 cut(s) 219, 314, 558
ApoI RAATTY 3 cut(s) 95, 419, 527
ArsI GACNNNNNNTTYG 2 cut(s) 678, 710
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 8 cut(s) 42, 65, 79, 84, 154, 165, 539, 686
AsuC2I CCSGG 2 cut(s) 55, 537
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 7 cut(s) 42, 65, 79, 84, 154, 165, 686
BanII GRGCYC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 23, 405
BbvI GCAGC 3 cut(s) 206, 301, 570
BccI CCATC 1 cut(s) 377
BceAI ACGGC 2 cut(s) 244, 657
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 4 cut(s) 70, 346, 549, 690
BcnI CCSGG 2 cut(s) 55, 537
BcoDI GTCTC 3 cut(s) 445, 454, 643
BisI GCNGC 6 cut(s) 5, 220, 223, 241, 315, 559
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 6 cut(s) 6, 221, 224, 242, 316, 560
Bme1390I CCNGG 6 cut(s) 55, 70, 346, 537, 549, 690
Bme18I GGWCC 7 cut(s) 42, 65, 79, 84, 154, 165, 686
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 8 cut(s) 42, 65, 79, 84, 154, 165, 539, 686
BmiI GGNNCC 2 cut(s) 67, 540
BmrFI CCNGG 6 cut(s) 55, 70, 346, 537, 549, 690
BmsI GCATC 4 cut(s) 101, 385, 623, 659
BplI GAGNNNNNCTC 2 cut(s) 623, 655
Bpu1102I GCTNAGC 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 55, 537
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 3 cut(s) 68, 344, 536
BsaWI WCCGGW 2 cut(s) 81, 289
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 610
Bse1I ACTGG 2 cut(s) 542, 589
Bse3DI GCAATG 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 4 cut(s) 70, 346, 549, 690
BseDI CCNNGG 3 cut(s) 68, 344, 536
BseLI CCNNNNNNNGG 2 cut(s) 548, 610
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 542, 589
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 3 cut(s) 206, 301, 570
BseYI CCCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 2 cut(s) 90, 541
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 23, 405
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 6 cut(s) 55, 82, 87, 91, 290, 536
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 548, 610
BsmAI GTCTC 3 cut(s) 445, 454, 643
BsmBI CGTCTC 2 cut(s) 445, 643
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 2 cut(s) 90, 541
Bso31I GGTCTC 1 cut(s) 454
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 2 cut(s) 23, 405
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 3 cut(s) 386, 505, 551
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 7 cut(s) 5, 35, 168, 222, 240, 317, 355
BspANI GGCC 2 cut(s) 90, 541
BspCNI CTCAG 1 cut(s) 391
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 67, 540
BspPI GGATC 2 cut(s) 394, 559
BspTNI GGTCTC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 2 cut(s) 542, 589
BssECI CCNNGG 3 cut(s) 68, 344, 536
BssMI GATC 3 cut(s) 386, 505, 551
Bst2UI CCWGG 4 cut(s) 70, 346, 549, 690
Bst4CI ACNGT 1 cut(s) 484
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 399, 642
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 3 cut(s) 389, 508, 554
BstMAI GTCTC 3 cut(s) 445, 454, 643
BstMBI GATC 3 cut(s) 386, 505, 551
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 4 cut(s) 120, 129, 228, 237
BstNI CCWGG 4 cut(s) 70, 346, 549, 690
BstSCI CCNGG 6 cut(s) 53, 68, 344, 535, 547, 688
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 3 cut(s) 206, 301, 570
BstX2I RGATCY 1 cut(s) 551
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 1 cut(s) 551
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 2 cut(s) 90, 541
BtgZI GCGATG 1 cut(s) 682
BtsIMutI CAGTG 1 cut(s) 480
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 8 cut(s) 42, 65, 79, 84, 154, 165, 539, 686
CpoI CGGWCCG 1 cut(s) 84
CspI CGGWCCG 1 cut(s) 84
CviAII CATG 3 cut(s) 332, 446, 729
CviJI RGCY 7 cut(s) 90, 181, 219, 403, 541, 561, 646
CviKI_1 RGCY 7 cut(s) 90, 181, 219, 403, 541, 561, 646
DdeI CTNAG 2 cut(s) 399, 642
DpnI GATC 3 cut(s) 388, 507, 553
DpnII GATC 3 cut(s) 386, 505, 551
DraI TTTAAA 1 cut(s) 418
DrdI GACNNNNNNGTC 1 cut(s) 484
DseDI GACNNNNNNGTC 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 88
EagI CGGCCG 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 403
EclXI CGGCCG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 454
Eco47I GGWCC 7 cut(s) 42, 65, 79, 84, 154, 165, 686
Eco52I CGGCCG 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 403
Eco88I CYCGRG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 4 cut(s) 68, 344, 547, 688
EcoT38I GRGCYC 1 cut(s) 405
Esp3I CGTCTC 2 cut(s) 445, 643
FaeI CATG 3 cut(s) 335, 449, 732
FaqI GGGAC 1 cut(s) 51
FatI CATG 3 cut(s) 331, 445, 728
FauNDI CATATG 1 cut(s) 715
FblI GTMKAC 2 cut(s) 321, 359
Fnu4HI GCNGC 6 cut(s) 5, 220, 223, 241, 315, 559
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 6 cut(s) 5, 220, 223, 241, 315, 559
GlaI GCGC 1 cut(s) 272
GluI GCNGC 6 cut(s) 5, 220, 223, 241, 315, 559
GsaI CCCAGC 1 cut(s) 181
HaeIII GGCC 2 cut(s) 90, 541
HapII CCGG 6 cut(s) 55, 82, 87, 91, 290, 536
HhaI GCGC 1 cut(s) 273
Hin1II CATG 3 cut(s) 335, 449, 732
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 2 cut(s) 106, 173
HpaII CCGG 6 cut(s) 55, 82, 87, 91, 290, 536
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 3 cut(s) 157, 322, 360
Hpy188III TCNNGA 4 cut(s) 290, 380, 406, 704
Hpy8I GTNNAC 3 cut(s) 157, 322, 360
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 25, 153, 230
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 3 cut(s) 49, 128, 558
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 129, 228, 237
HpyF3I CTNAG 2 cut(s) 399, 642
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 3 cut(s) 335, 449, 732
HspAI GCGC 1 cut(s) 271
Kpn2I TCCGGA 1 cut(s) 289
Kzo9I GATC 3 cut(s) 386, 505, 551
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 3 cut(s) 206, 301, 570
LweI GCATC 4 cut(s) 101, 385, 623, 659
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 198, 434
MalI GATC 3 cut(s) 388, 507, 553
MboI GATC 3 cut(s) 386, 505, 551
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 2 cut(s) 23, 405
MluCI AATT 8 cut(s) 60, 95, 190, 209, 366, 419, 452, 527
MnlI CCTC 6 cut(s) 33, 37, 198, 226, 261, 625
MroI TCCGGA 1 cut(s) 289
MseI TTAA 5 cut(s) 369, 417, 582, 627, 660
MspA1I CMGCKG 2 cut(s) 181, 355
MspI CCGG 6 cut(s) 55, 82, 87, 91, 290, 536
MspR9I CCNGG 6 cut(s) 55, 70, 346, 537, 549, 690
MvaI CCWGG 4 cut(s) 70, 346, 549, 690
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 4 cut(s) 120, 129, 228, 237
NciI CCSGG 2 cut(s) 55, 537
NdeI CATATG 1 cut(s) 715
NdeII GATC 3 cut(s) 386, 505, 551
NlaIII CATG 3 cut(s) 335, 449, 732
NlaIV GGNNCC 2 cut(s) 67, 540
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 198
PaeR7I CTCGAG 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 106, 173
PfoI TCCNGGA 2 cut(s) 53, 547
PkrI GCNGC 6 cut(s) 6, 221, 224, 242, 316, 560
PpuMI RGGWCCY 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 4 cut(s) 68, 344, 547, 688
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 4 cut(s) 68, 344, 547, 688
PspN4I GGNNCC 2 cut(s) 67, 540
PspPI GGNCC 8 cut(s) 42, 65, 79, 84, 154, 165, 539, 686
PspPPI RGGWCCY 1 cut(s) 42
PsuI RGATCY 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 181
Rsr2I CGGWCCG 1 cut(s) 84
RsrII CGGWCCG 1 cut(s) 84
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 5 cut(s) 369, 417, 582, 627, 660
SatI GCNGC 6 cut(s) 5, 220, 223, 241, 315, 559
Sau3AI GATC 3 cut(s) 386, 505, 551
Sau96I GGNCC 8 cut(s) 42, 65, 79, 84, 154, 165, 539, 686
ScrFI CCNGG 6 cut(s) 55, 70, 346, 537, 549, 690
SduI GDGCHC 2 cut(s) 23, 405
SfaNI GCATC 4 cut(s) 101, 385, 623, 659
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 7 cut(s) 42, 65, 79, 84, 154, 165, 686
SlaI CTCGAG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 8 cut(s) 60, 95, 190, 209, 366, 419, 452, 527
SsiI CCGC 7 cut(s) 5, 35, 168, 222, 240, 317, 355
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 6 cut(s) 53, 68, 344, 535, 547, 688
TaaI ACNGT 1 cut(s) 484
TaiI ACGT 1 cut(s) 441
TaqI TCGA 7 cut(s) 17, 29, 109, 405, 450, 504, 697
TaqII GACCGA 1 cut(s) 142
TasI AATT 8 cut(s) 60, 95, 190, 209, 366, 419, 452, 527
TauI GCSGC 3 cut(s) 7, 225, 243
TfiI GAWTC 2 cut(s) 106, 173
Tru1I TTAA 5 cut(s) 369, 417, 582, 627, 660
Tru9I TTAA 5 cut(s) 369, 417, 582, 627, 660
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 198
TseI GCWGC 3 cut(s) 219, 314, 558
Tsp45I GTSAC 1 cut(s) 198
TspDTI ATGAA 2 cut(s) 276, 645
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 7 cut(s) 42, 65, 79, 84, 154, 165, 686
XapI RAATTY 3 cut(s) 95, 419, 527
XhoI CTCGAG 1 cut(s) 404
XmiI GTMKAC 2 cut(s) 321, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.