Prupe.1G435200_v2.0.a1

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011040
Physical Location & Seq
Forward (+)
37173657 .. 37176543
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G435200.2

Sequence Viewer

Length: 729 bp
ATGCCGCCATTCTGGTCGAGCACGACCTCGAAGGCGGTGGGGTCCTTACTGTCCCGTAGAATCGGCCCGAGGCATCTGATCCGGTCCGGCCGGAAATACGACCCGGTTCGATGCTTTAGTAACATTGCGGGCATAGAAACCCCATCGTCGATCCACAAGTGGACCGGCGATTCCCGACTGGATTATAATTATAGGTCACGGAGGCAATTTCTCGGCTGCGGCGACGGCGAAGAAGGCGGTGTTTTATCCAAAGTTTATGAGGAGAAGCGCGTCTTGGGGTATTCTCCAGAGCAATTGTTCGATGTGGTTGCTGCTGTAGACTTGTATCATGGTTTTGTCCCCTGGTGTCAGCGGTCCGACATAATCAAAACCTTTCCGGATGGATCATTTGATGCTGAGCTGGAGATTGGTTTTAAATTTCTGGTGGAAAGTTACGTTTCCCATGTCGAATTAGAGAGAGCAAAGCGTATAAAGACCACTGTGTCAAATAGTTCCCTTTTCGATCATCTGATAAACATCTGGGAATTCAATCCGGGACCTGTTCCTGGATCTTGCAACCTTTATTTCTTGGTGGATTTCAAGTTCCGATCGCCAATTTACCGACAGGTGGCATCTGTGTTCTTTAAGGAGGTGGTCTCTAAGCTTGTTGGTTCATTTAATGAGCGATGCCGTTTGATATACGGACCAGGAGTTCCAATTCATGAACATACATATGGACAAAGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

243

Amino Acids

27.57

Weight (kDa)

8.92

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AasI GACNNNNNNGTC 1 cut(s) 481
AccI GTMKAC 1 cut(s) 318
AccII CGCG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 6 cut(s) 5, 35, 128, 219, 237, 352
AclWI GGATC 4 cut(s) 73, 145, 391, 556
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 416, 524
AfiI CCNNNNNNNGG 2 cut(s) 545, 607
AgsI TTSAA 2 cut(s) 529, 580
AjnI CCWGG 3 cut(s) 341, 544, 685
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AloI GAACNNNNNNTCC 4 cut(s) 566, 598, 675, 707
AluBI AGCT 2 cut(s) 400, 643
AluI AGCT 2 cut(s) 400, 643
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 640
AlwI GGATC 4 cut(s) 73, 145, 391, 556
Ama87I CYCGRG 1 cut(s) 67
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 2 cut(s) 64, 88
ApeKI GCWGC 2 cut(s) 216, 311
ApoI RAATTY 2 cut(s) 416, 524
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 7 cut(s) 42, 65, 84, 162, 354, 536, 683
AsuC2I CCSGG 2 cut(s) 104, 534
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 6 cut(s) 42, 84, 162, 354, 536, 683
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 203, 298
BccI CCATC 2 cut(s) 151, 374
BceAI ACGGC 2 cut(s) 241, 654
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 3 cut(s) 343, 546, 687
BcnI CCSGG 2 cut(s) 104, 534
BcoDI GTCTC 1 cut(s) 640
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 4 cut(s) 5, 217, 220, 312
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 4 cut(s) 6, 218, 221, 313
Bme1390I CCNGG 5 cut(s) 104, 343, 534, 546, 687
Bme18I GGWCC 6 cut(s) 42, 84, 162, 354, 536, 683
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 7 cut(s) 42, 65, 84, 162, 354, 536, 683
BmiI GGNNCC 2 cut(s) 43, 537
BmrFI CCNGG 5 cut(s) 104, 343, 534, 546, 687
BmsI GCATC 5 cut(s) 82, 101, 382, 620, 656
BplI GAGNNNNNCTC 2 cut(s) 620, 652
BpmI CTGGAG 2 cut(s) 270, 422
Bpu1102I GCTNAGC 1 cut(s) 396
BpuMI CCSGG 2 cut(s) 104, 534
BsaBI GATNNNNATC 1 cut(s) 515
BsaI GGTCTC 1 cut(s) 640
BsaJI CCNNGG 2 cut(s) 68, 341
BsaWI WCCGGW 2 cut(s) 81, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 545, 607
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 515
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 3 cut(s) 343, 546, 687
BseDI CCNNGG 2 cut(s) 68, 341
BseGI GGATG 1 cut(s) 385
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 2 cut(s) 545, 607
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 275
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 203, 298
Bsh1236I CGCG 1 cut(s) 270
Bsh1285I CGRYCG 2 cut(s) 91, 590
BshFI GGCC 2 cut(s) 66, 90
BsiEI CGRYCG 2 cut(s) 91, 590
BsiHKAI GWGCWC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 7 cut(s) 82, 87, 91, 104, 165, 377, 533
BslFI GGGAC 3 cut(s) 37, 323, 549
BslI CCNNNNNNNGG 2 cut(s) 545, 607
BsmAI GTCTC 1 cut(s) 640
BsmFI GGGAC 3 cut(s) 37, 323, 549
BsnI GGCC 2 cut(s) 66, 90
Bso31I GGTCTC 1 cut(s) 640
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 6 cut(s) 78, 150, 383, 502, 548, 587
Bsp1720I GCTNAGC 1 cut(s) 396
BspACI CCGC 6 cut(s) 5, 35, 128, 219, 237, 352
BspANI GGCC 2 cut(s) 66, 90
BspCNI CTCAG 1 cut(s) 388
BspEI TCCGGA 1 cut(s) 376
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 2 cut(s) 43, 537
BspPI GGATC 4 cut(s) 73, 145, 391, 556
BspTNI GGTCTC 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 68, 341
BssMI GATC 6 cut(s) 78, 150, 383, 502, 548, 587
Bst2UI CCWGG 3 cut(s) 343, 546, 687
Bst4CI ACNGT 2 cut(s) 51, 481
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 396, 639
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 6 cut(s) 81, 153, 386, 505, 551, 590
BstMAI GTCTC 1 cut(s) 640
BstMBI GATC 6 cut(s) 78, 150, 383, 502, 548, 587
BstMCI CGRYCG 2 cut(s) 91, 590
BstMWI GCNNNNNNNGC 2 cut(s) 225, 234
BstNI CCWGG 3 cut(s) 343, 546, 687
BstSCI CCNGG 5 cut(s) 102, 341, 532, 544, 685
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 203, 298
BstX2I RGATCY 1 cut(s) 548
BstYI RGATCY 1 cut(s) 548
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 2 cut(s) 66, 90
BtgZI GCGATG 1 cut(s) 679
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 130
CciI TCATGA 1 cut(s) 700
CfoI GCGC 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 7 cut(s) 42, 65, 84, 162, 354, 536, 683
CpoI CGGWCCG 2 cut(s) 84, 354
CseI GACGC 1 cut(s) 259
CspI CGGWCCG 2 cut(s) 84, 354
CviAII CATG 4 cut(s) 329, 443, 701, 726
CviJI RGCY 5 cut(s) 66, 90, 216, 400, 643
CviKI_1 RGCY 5 cut(s) 66, 90, 216, 400, 643
DdeI CTNAG 2 cut(s) 396, 639
DpnI GATC 6 cut(s) 80, 152, 385, 504, 550, 589
DpnII GATC 6 cut(s) 78, 150, 383, 502, 548, 587
DraI TTTAAA 1 cut(s) 415
DrdI GACNNNNNNGTC 1 cut(s) 481
DseDI GACNNNNNNGTC 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 88
EagI CGGCCG 1 cut(s) 88
EclXI CGGCCG 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 640
Eco47I GGWCC 6 cut(s) 42, 84, 162, 354, 536, 683
Eco52I CGGCCG 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 67
EcoO109I RGGNCCY 2 cut(s) 42, 536
EcoRI GAATTC 1 cut(s) 524
EcoRII CCWGG 3 cut(s) 341, 544, 685
FaeI CATG 4 cut(s) 332, 446, 704, 729
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 3 cut(s) 37, 323, 549
FatI CATG 4 cut(s) 328, 442, 700, 725
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 712
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 4 cut(s) 5, 217, 220, 312
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 4 cut(s) 5, 217, 220, 312
GlaI GCGC 1 cut(s) 269
GluI GCNGC 4 cut(s) 5, 217, 220, 312
GsuI CTGGAG 2 cut(s) 270, 422
HaeIII GGCC 2 cut(s) 66, 90
HapII CCGG 7 cut(s) 82, 87, 91, 104, 165, 377, 533
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 270
Hin1II CATG 4 cut(s) 332, 446, 704, 729
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 2 cut(s) 60, 170
HpaII CCGG 7 cut(s) 82, 87, 91, 104, 165, 377, 533
Hpy166II GTNNAC 2 cut(s) 162, 319
Hpy188I TCNGA 4 cut(s) 78, 358, 510, 587
Hpy188III TCNNGA 4 cut(s) 174, 287, 377, 701
Hpy8I GTNNAC 2 cut(s) 162, 319
Hpy99I CGWCG 2 cut(s) 151, 227
HpyAV CCTTC 2 cut(s) 25, 227
HpyCH4III ACNGT 2 cut(s) 51, 481
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 1 cut(s) 555
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 234
HpyF3I CTNAG 2 cut(s) 396, 639
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 4 cut(s) 332, 446, 704, 729
HspAI GCGC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 376
Kzo9I GATC 6 cut(s) 78, 150, 383, 502, 548, 587
Lsp1109I GCAGC 2 cut(s) 203, 298
LweI GCATC 5 cut(s) 82, 101, 382, 620, 656
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 3 cut(s) 119, 195, 431
MalI GATC 6 cut(s) 80, 152, 385, 504, 550, 589
MboI GATC 6 cut(s) 78, 150, 383, 502, 548, 587
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 1 cut(s) 548
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 8 cut(s) 187, 206, 293, 416, 449, 524, 594, 696
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 5 cut(s) 37, 63, 195, 253, 622
MroI TCCGGA 1 cut(s) 376
MseI TTAA 3 cut(s) 414, 624, 657
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 7 cut(s) 82, 87, 91, 104, 165, 377, 533
MspR9I CCNGG 5 cut(s) 104, 343, 534, 546, 687
MunI CAATTG 1 cut(s) 293
MvaI CCWGG 3 cut(s) 343, 546, 687
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 225, 234
NciI CCSGG 2 cut(s) 104, 534
NdeI CATATG 1 cut(s) 712
NdeII GATC 6 cut(s) 78, 150, 383, 502, 548, 587
NlaIII CATG 4 cut(s) 332, 446, 704, 729
NlaIV GGNNCC 2 cut(s) 43, 537
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 195
PagI TCATGA 1 cut(s) 700
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 2 cut(s) 60, 170
PfoI TCCNGGA 2 cut(s) 532, 544
PkrI GCNGC 4 cut(s) 6, 218, 221, 313
Ple19I CGATCG 1 cut(s) 590
PpuMI RGGWCCY 2 cut(s) 42, 536
PsiI TTATAA 1 cut(s) 186
Psp5II RGGWCCY 2 cut(s) 42, 536
Psp6I CCWGG 3 cut(s) 341, 544, 685
PspGI CCWGG 3 cut(s) 341, 544, 685
PspN4I GGNNCC 2 cut(s) 43, 537
PspPI GGNCC 7 cut(s) 42, 65, 84, 162, 354, 536, 683
PspPPI RGGWCCY 2 cut(s) 42, 536
PsuI RGATCY 1 cut(s) 548
PvuI CGATCG 1 cut(s) 590
RseI CAYNNNNRTG 1 cut(s) 711
Rsr2I CGGWCCG 2 cut(s) 84, 354
RsrII CGGWCCG 2 cut(s) 84, 354
SaqAI TTAA 3 cut(s) 414, 624, 657
SatI GCNGC 4 cut(s) 5, 217, 220, 312
Sau3AI GATC 6 cut(s) 78, 150, 383, 502, 548, 587
Sau96I GGNCC 7 cut(s) 42, 65, 84, 162, 354, 536, 683
ScrFI CCNGG 5 cut(s) 104, 343, 534, 546, 687
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 5 cut(s) 82, 101, 382, 620, 656
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 6 cut(s) 42, 84, 162, 354, 536, 683
SmiMI CAYNNNNRTG 1 cut(s) 711
Sse9I AATT 8 cut(s) 187, 206, 293, 416, 449, 524, 594, 696
SsiI CCGC 6 cut(s) 5, 35, 128, 219, 237, 352
StyD4I CCNGG 5 cut(s) 102, 341, 532, 544, 685
TaaI ACNGT 2 cut(s) 51, 481
TaiI ACGT 1 cut(s) 438
TaqI TCGA 7 cut(s) 17, 29, 109, 149, 300, 447, 501
TasI AATT 8 cut(s) 187, 206, 293, 416, 449, 524, 594, 696
TauI GCSGC 2 cut(s) 7, 222
TfiI GAWTC 2 cut(s) 60, 170
Tru1I TTAA 3 cut(s) 414, 624, 657
Tru9I TTAA 3 cut(s) 414, 624, 657
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 2 cut(s) 216, 311
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 3 cut(s) 642, 689, 717
TspGWI ACGGA 2 cut(s) 214, 696
TspRI CASTG 1 cut(s) 484
VpaK11BI GGWCC 6 cut(s) 42, 84, 162, 354, 536, 683
XapI RAATTY 2 cut(s) 416, 524
XmiI GTMKAC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.