pycom08g08180

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011040
Physical Location & Seq
Forward (+)
6597446 .. 6598301
856 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08180.2

Sequence Viewer

Length: 204 bp
ATGGATCGATTTGATGCTGAGCTCGAGATTGGGTTTAAATTTCTTGTTGAAAGTTACATCTCCCATGTCGAATTAGAGAGACCGAAGCGTATAAAGACCACTGTGTCAAATAGTTCCCTTTTCGATCGATCTCATAAACATCTGGGAATTCAATCCGGGGCCAGTTCCAGGATCTTGCAGCCTTTATTTCTTGGTGGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

68

Amino Acids

7.64

Weight (kDa)

8.2

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AclWI GGATC 2 cut(s) 12, 179
AcsI RAATTY 2 cut(s) 38, 147
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 50, 152
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 12, 179
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 2 cut(s) 38, 147
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 23
BanII GRGCYC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 169
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 73
BisI GCNGC 1 cut(s) 179
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 157, 169
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 2 cut(s) 157, 169
BmsI GCATC 1 cut(s) 4
Bpu1102I GCTNAGC 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 157
Bsa29I ATCGAT 2 cut(s) 7, 127
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 169
BseCI ATCGAT 2 cut(s) 7, 127
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 161
BshVI ATCGAT 2 cut(s) 7, 127
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 4 cut(s) 4, 124, 128, 171
Bsp1720I GCTNAGC 1 cut(s) 18
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 10
BspDI ATCGAT 2 cut(s) 7, 127
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 2 cut(s) 12, 179
BspTNI GGTCTC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 4 cut(s) 4, 124, 128, 171
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 4 cut(s) 7, 127, 131, 174
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 4 cut(s) 4, 124, 128, 171
BstMCI CGRYCG 1 cut(s) 127
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 155, 167
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
Bsu15I ATCGAT 2 cut(s) 7, 127
BsuRI GGCC 1 cut(s) 161
BsuTUI ATCGAT 2 cut(s) 7, 127
BtsIMutI CAGTG 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 159
ClaI ATCGAT 2 cut(s) 7, 127
CviAII CATG 1 cut(s) 65
CviJI RGCY 3 cut(s) 22, 161, 181
CviKI_1 RGCY 3 cut(s) 22, 161, 181
DdeI CTNAG 1 cut(s) 18
DpnI GATC 4 cut(s) 6, 126, 130, 173
DpnII GATC 4 cut(s) 4, 124, 128, 171
DraI TTTAAA 1 cut(s) 37
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 1 cut(s) 68
FaiI YATR 3 cut(s) 66, 92, 135
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 156
Hin1II CATG 1 cut(s) 68
HpaII CCGG 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 4 cut(s) 4, 124, 128, 171
LpnPI CCDG 5 cut(s) 128, 154, 169, 175, 181
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 4
MaeIII GTNAC 1 cut(s) 53
MalI GATC 4 cut(s) 6, 126, 130, 173
MboI GATC 4 cut(s) 4, 124, 128, 171
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 3 cut(s) 38, 71, 147
MseI TTAA 2 cut(s) 36, 202
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 157, 169
MvaI CCWGG 1 cut(s) 169
NciI CCSGG 1 cut(s) 157
NdeII GATC 4 cut(s) 4, 124, 128, 171
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 160
PaeR7I CTCGAG 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 167
PkrI GCNGC 1 cut(s) 180
Ple19I CGATCG 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 159
PsuI RGATCY 1 cut(s) 171
PvuI CGATCG 1 cut(s) 127
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 36, 202
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 4 cut(s) 4, 124, 128, 171
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 157, 169
SduI GDGCHC 1 cut(s) 24
SetI ASST 1 cut(s) 24
SfaNI GCATC 1 cut(s) 4
Sfr274I CTCGAG 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 3 cut(s) 38, 71, 147
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 155, 167
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 5 cut(s) 7, 24, 69, 123, 127
TaqII GACCGA 1 cut(s) 97
TasI AATT 3 cut(s) 38, 71, 147
Tru1I TTAA 2 cut(s) 36, 202
Tru9I TTAA 2 cut(s) 36, 202
TscAI CASTG 1 cut(s) 106
TseI GCWGC 1 cut(s) 178
TspRI CASTG 1 cut(s) 106
XapI RAATTY 2 cut(s) 38, 147
XhoI CTCGAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.