RLG00000010683

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011040
Physical Location & Seq
Forward (+)
3626283 .. 3629748
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010683

Sequence Viewer

Length: 987 bp
ATGAAGGATCTGCTCCCCAATCTGATCAGAAACAACTGCGGCGACGGCGACGAGGTTCATCGGCGAGCAGCCGGGCACCAAGGTGATGTAAAGGAACTCCGAGCCCGCTGCATAAACTCGCCACGGGCTGCACTAGCGCCGGCTTCTGGCCTGCACGACCATCGCCGGCTGCACCTTCACGGCTCTCTTCTTACTCTTAGGGTTTCCGAACATTTGGGAATCAATCTCCTCCGTCAATCGTCGCAGTTTCCGATGCCGCCGTTCTGGTCGACCACGACCTCGAAGGCGGTGGGGTCCTTACTCTCTCGTGGAAATGGATACAGCTCCGCCAGAAAGTTAAATAGGATTCGCCGCCTGAGTAGCATTGTCGGCATAGAGACCCCGTCGGTTCAGAAATGGACCGGCGACGGTGTCAGCAACACGTCACGAGTTTTGGCAAATCCTTTTCATGAGCAAAGGAGGCGGTTTTTGGGCTGCGGCGACGGGGAAGAAGGTGGTGTGTTGTCCAAGGTTTACGAGGAGAAGCGCGTCTTGGGGTATTCTCCTGAGCAGTTATTCGATGTGGTTGCTGCTGTAGACTTGTATCATGGTTTTGTCCCCTGGTGCCAGCGGTCAGAGATAATTCAAACCTATGCTGGTGGATCATTTGATGCTGAGCTGGAGATCGGTTTCAAGTTTCTTGTTGAAAGTTACGTGTCCCATGTTGAATTAGAAAGACCAAAGCGTATTAAGACAACTGTGTCAAACAGTACCCTTTTCGATCATCTAATAAACATCTGGGAATTCAATCCTGGACCAGTTCCTGGAGCTTGCAACCTTTATTTCTTGGTGGATTTTAAGTTTCAGTCACCACTTTATAGACAGGTGGCCTCTGTGTTCTTCAAAGAGGTGGTCTCTAAGCTTGTTGGTTCATTCAATGACCGATGCCGGCTGATATATGGACCAGGAGTTCGAGTTCTTGAAAACTCATATGGACAAAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

329

Amino Acids

36.68

Weight (kDa)

9.21

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 179 - 305 3.8e-21 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 739
AccB1I GGYRCC 2 cut(s) 75, 603
AccB7I CCANNNNNTGG 1 cut(s) 803
AccI GTMKAC 2 cut(s) 269, 576
AccII CGCG 1 cut(s) 528
AciI CCGC 9 cut(s) 39, 106, 257, 287, 327, 352, 463, 477, 610
AclWI GGATC 2 cut(s) 15, 649
AcsI RAATTY 1 cut(s) 782
AfaI GTAC 1 cut(s) 751
AfiI CCNNNNNNNGG 2 cut(s) 146, 803
AflIII ACRYGT 2 cut(s) 420, 693
AgsI TTSAA 8 cut(s) 626, 673, 686, 707, 787, 883, 916, 962
AjiI CACGTC 1 cut(s) 423
AjnI CCWGG 4 cut(s) 599, 790, 802, 943
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AleI CACNNNNGTG 1 cut(s) 81
AloI GAACNNNNNNTCC 4 cut(s) 933, 939, 965, 971
AluBI AGCT 4 cut(s) 324, 658, 809, 901
AluI AGCT 4 cut(s) 324, 658, 809, 901
Alw26I GTCTC 2 cut(s) 371, 898
AlwI GGATC 2 cut(s) 15, 649
AlwNI CAGNNNCTG 1 cut(s) 803
AoxI GGCC 2 cut(s) 148, 867
ApeKI GCWGC 6 cut(s) 68, 108, 128, 169, 474, 569
ApoI RAATTY 1 cut(s) 782
ArsI GACNNNNNNTTYG 4 cut(s) 876, 908, 933, 965
AspLEI GCGC 2 cut(s) 139, 528
AspS9I GGNCC 4 cut(s) 294, 399, 794, 941
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 95, 840
AvaII GGWCC 4 cut(s) 294, 399, 794, 941
BaeGI GKGCMC 1 cut(s) 78
BanI GGYRCC 2 cut(s) 75, 603
BanII GRGCYC 1 cut(s) 106
BauI CACGAG 2 cut(s) 306, 426
BbvI GCAGC 6 cut(s) 80, 95, 115, 156, 461, 556
BccI CCATC 1 cut(s) 168
BceAI ACGGC 3 cut(s) 61, 196, 244
BcgI CGANNNNNNTGC 6 cut(s) 90, 124, 143, 177, 548, 582
BciT130I CCWGG 4 cut(s) 601, 792, 804, 945
BciVI GTATCC 1 cut(s) 311
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 371, 898
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 140
BfuI GTATCC 1 cut(s) 311
BlpI GCTNAGC 1 cut(s) 654
Bme1390I CCNGG 5 cut(s) 73, 601, 792, 804, 945
Bme18I GGWCC 4 cut(s) 294, 399, 794, 941
BmgBI CACGTC 1 cut(s) 423
BmgT120I GGNCC 4 cut(s) 294, 399, 794, 941
BmiI GGNNCC 3 cut(s) 77, 295, 605
BmrFI CCNGG 5 cut(s) 73, 601, 792, 804, 945
BmsI GCATC 3 cut(s) 243, 640, 914
BplI GAGNNNNNCTC 2 cut(s) 878, 910
BpmI CTGGAG 2 cut(s) 680, 825
Bpu10I CCTNAGC 1 cut(s) 546
Bpu1102I GCTNAGC 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 694
BsaI GGTCTC 2 cut(s) 371, 898
BsaJI CCNNGG 4 cut(s) 79, 122, 507, 599
BsaXI ACNNNNNCTCC 2 cut(s) 939, 969
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 803
Bse118I RCCGGY 4 cut(s) 139, 165, 401, 927
Bse1I ACTGG 1 cut(s) 797
BseBI CCWGG 4 cut(s) 601, 792, 804, 945
BseDI CCNNGG 4 cut(s) 79, 122, 507, 599
BseLI CCNNNNNNNGG 2 cut(s) 146, 803
BseMII CTCAG 3 cut(s) 347, 537, 645
BseNI ACTGG 1 cut(s) 797
BseRI GAGGAG 2 cut(s) 218, 533
BseSI GKGCMC 1 cut(s) 78
BseXI GCAGC 6 cut(s) 80, 95, 115, 156, 461, 556
BsgI GTGCAG 3 cut(s) 114, 137, 155
Bsh1236I CGCG 1 cut(s) 528
BshFI GGCC 2 cut(s) 150, 869
BshNI GGYRCC 2 cut(s) 75, 603
BsiSI CCGG 5 cut(s) 72, 140, 166, 402, 928
BslFI GGGAC 2 cut(s) 581, 682
BslI CCNNNNNNNGG 2 cut(s) 146, 803
BsmAI GTCTC 2 cut(s) 371, 898
BsmFI GGGAC 2 cut(s) 581, 682
BsnI GGCC 2 cut(s) 150, 869
Bso31I GGTCTC 2 cut(s) 371, 898
Bsp1286I GDGCHC 2 cut(s) 78, 106
Bsp143I GATC 5 cut(s) 7, 24, 641, 663, 760
Bsp1720I GCTNAGC 1 cut(s) 654
BspACI CCGC 9 cut(s) 39, 106, 257, 287, 327, 352, 463, 477, 610
BspANI GGCC 2 cut(s) 150, 869
BspCNI CTCAG 3 cut(s) 348, 538, 646
BspFNI CGCG 1 cut(s) 528
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 3 cut(s) 77, 295, 605
BspPI GGATC 2 cut(s) 15, 649
BspT107I GGYRCC 2 cut(s) 75, 603
BspTNI GGTCTC 2 cut(s) 371, 898
BsrFI RCCGGY 4 cut(s) 139, 165, 401, 927
BsrI ACTGG 1 cut(s) 797
BssAI RCCGGY 4 cut(s) 139, 165, 401, 927
BssECI CCNNGG 4 cut(s) 79, 122, 507, 599
BssMI GATC 5 cut(s) 7, 24, 641, 663, 760
BssSI CACGAG 2 cut(s) 306, 426
BssT1I CCWWGG 2 cut(s) 79, 507
Bst2BI CACGAG 2 cut(s) 306, 426
Bst2UI CCWGG 4 cut(s) 601, 792, 804, 945
Bst4CI ACNGT 3 cut(s) 410, 739, 749
Bst6I CTCTTC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 694
BstC8I GCNNGC 8 cut(s) 66, 106, 141, 152, 167, 608, 811, 929
BstDEI CTNAG 5 cut(s) 197, 356, 546, 654, 897
BstDSI CCRYGG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 528
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 2 cut(s) 139, 528
BstKTI GATC 5 cut(s) 10, 27, 644, 666, 763
BstMAI GTCTC 2 cut(s) 371, 898
BstMBI GATC 5 cut(s) 7, 24, 641, 663, 760
BstMWI GCNNNNNNNGC 5 cut(s) 45, 134, 360, 369, 460
BstNI CCWGG 4 cut(s) 601, 792, 804, 945
BstSCI CCNGG 5 cut(s) 71, 599, 790, 802, 943
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 6 cut(s) 80, 95, 115, 156, 461, 556
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 150, 869
BtgI CCRYGG 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 146
BtrI CACGTC 1 cut(s) 423
Cac8I GCNNGC 8 cut(s) 66, 106, 141, 152, 167, 608, 811, 929
CaiI CAGNNNCTG 1 cut(s) 803
CciI TCATGA 1 cut(s) 448
CfoI GCGC 2 cut(s) 139, 528
Cfr10I RCCGGY 4 cut(s) 139, 165, 401, 927
Cfr13I GGNCC 4 cut(s) 294, 399, 794, 941
CseI GACGC 1 cut(s) 517
Csp6I GTAC 1 cut(s) 750
CviAII CATG 4 cut(s) 449, 587, 701, 984
CviQI GTAC 1 cut(s) 750
DdeI CTNAG 5 cut(s) 197, 356, 546, 654, 897
DpnI GATC 5 cut(s) 9, 26, 643, 665, 762
DpnII GATC 5 cut(s) 7, 24, 641, 663, 760
DrdI GACNNNNNNGTC 1 cut(s) 739
DseDI GACNNNNNNGTC 1 cut(s) 739
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 79, 507
Eco24I GRGCYC 1 cut(s) 106
Eco31I GGTCTC 2 cut(s) 371, 898
Eco47I GGWCC 4 cut(s) 294, 399, 794, 941
EcoO109I RGGNCCY 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 782
EcoRII CCWGG 4 cut(s) 599, 790, 802, 943
EcoT14I CCWWGG 2 cut(s) 79, 507
EcoT38I GRGCYC 1 cut(s) 106
ErhI CCWWGG 2 cut(s) 79, 507
FaeI CATG 4 cut(s) 452, 590, 704, 987
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 2 cut(s) 581, 682
FatI CATG 4 cut(s) 448, 586, 700, 983
FauI CCCGC 1 cut(s) 113
FauNDI CATATG 1 cut(s) 970
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 2 cut(s) 269, 576
FriOI GRGCYC 1 cut(s) 106
FspBI CTAG 1 cut(s) 134
GlaI GCGC 2 cut(s) 138, 527
GsuI CTGGAG 2 cut(s) 680, 825
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 150, 869
HapII CCGG 5 cut(s) 72, 140, 166, 402, 928
HgaI GACGC 1 cut(s) 517
HhaI GCGC 2 cut(s) 139, 528
Hin1II CATG 4 cut(s) 452, 590, 704, 987
Hin6I GCGC 2 cut(s) 137, 526
HinP1I GCGC 2 cut(s) 137, 526
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 2 cut(s) 219, 346
HpaII CCGG 5 cut(s) 72, 140, 166, 402, 928
HphI GGTGA 2 cut(s) 95, 840
Hpy166II GTNNAC 3 cut(s) 270, 514, 577
Hpy188I TCNGA 7 cut(s) 24, 29, 101, 208, 252, 393, 616
Hpy188III TCNNGA 4 cut(s) 426, 449, 545, 959
Hpy8I GTNNAC 3 cut(s) 270, 514, 577
Hpy99I CGWCG 6 cut(s) 47, 53, 244, 388, 410, 485
HpyAV CCTTC 3 cut(s) 185, 277, 485
HpyCH4III ACNGT 3 cut(s) 410, 739, 749
HpyCH4IV ACGT 2 cut(s) 422, 693
HpyCH4V TGCA 6 cut(s) 111, 131, 154, 172, 813, 983
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 134, 360, 369, 460
HpyF3I CTNAG 5 cut(s) 197, 356, 546, 654, 897
HpySE526I ACGT 2 cut(s) 422, 693
Hsp92II CATG 4 cut(s) 452, 590, 704, 987
HspAI GCGC 2 cut(s) 137, 526
KroI GCCGGC 3 cut(s) 139, 165, 927
KroNI GCCGGC 3 cut(s) 141, 167, 929
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 5 cut(s) 7, 24, 641, 663, 760
LmnI GCTCC 3 cut(s) 18, 329, 806
Lsp1109I GCAGC 6 cut(s) 80, 95, 115, 156, 461, 556
LweI GCATC 3 cut(s) 243, 640, 914
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 422, 693
MaeIII GTNAC 3 cut(s) 423, 689, 846
MalI GATC 5 cut(s) 9, 26, 643, 665, 762
MboI GATC 5 cut(s) 7, 24, 641, 663, 760
MboII GAAGA 3 cut(s) 179, 500, 871
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 78, 106
MluCI AATT 3 cut(s) 621, 707, 782
MnlI CCTC 7 cut(s) 46, 239, 289, 453, 511, 880, 880
MroNI GCCGGC 3 cut(s) 139, 165, 927
MseI TTAA 3 cut(s) 338, 729, 837
MslI CAYNNNNRTG 1 cut(s) 81
MspA1I CMGCKG 2 cut(s) 108, 610
MspI CCGG 5 cut(s) 72, 140, 166, 402, 928
MspR9I CCNGG 5 cut(s) 73, 601, 792, 804, 945
MvaI CCWGG 4 cut(s) 601, 792, 804, 945
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 5 cut(s) 45, 134, 360, 369, 460
NaeI GCCGGC 3 cut(s) 141, 167, 929
NciI CCSGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 970
NdeII GATC 5 cut(s) 7, 24, 641, 663, 760
NgoMIV GCCGGC 3 cut(s) 139, 165, 927
NlaIII CATG 4 cut(s) 452, 590, 704, 987
NlaIV GGNNCC 3 cut(s) 77, 295, 605
NmuCI GTSAC 2 cut(s) 423, 846
OliI CACNNNNGTG 1 cut(s) 81
PagI TCATGA 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 248
PdiI GCCGGC 3 cut(s) 141, 167, 929
PfeI GAWTC 2 cut(s) 219, 346
PflFI GACNNNGTC 2 cut(s) 382, 410
PflMI CCANNNNNTGG 1 cut(s) 803
PfoI TCCNGGA 2 cut(s) 790, 802
Ppu21I YACGTR 1 cut(s) 694
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 4 cut(s) 599, 790, 802, 943
PspGI CCWGG 4 cut(s) 599, 790, 802, 943
PspN4I GGNNCC 3 cut(s) 77, 295, 605
PspPI GGNCC 4 cut(s) 294, 399, 794, 941
PspPPI RGGWCCY 1 cut(s) 294
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 2 cut(s) 382, 410
RsaI GTAC 1 cut(s) 751
RsaNI GTAC 1 cut(s) 750
RseI CAYNNNNRTG 1 cut(s) 81
SalI GTCGAC 1 cut(s) 268
SaqAI TTAA 3 cut(s) 338, 729, 837
Sau3AI GATC 5 cut(s) 7, 24, 641, 663, 760
Sau96I GGNCC 4 cut(s) 294, 399, 794, 941
ScrFI CCNGG 5 cut(s) 73, 601, 792, 804, 945
SduI GDGCHC 2 cut(s) 78, 106
SfaNI GCATC 3 cut(s) 243, 640, 914
SfcI CTRYAG 1 cut(s) 573
SinI GGWCC 4 cut(s) 294, 399, 794, 941
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 3 cut(s) 621, 707, 782
SsiI CCGC 9 cut(s) 39, 106, 257, 287, 327, 352, 463, 477, 610
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 5 cut(s) 71, 599, 790, 802, 943
StyI CCWWGG 2 cut(s) 79, 507
TaaI ACNGT 3 cut(s) 410, 739, 749
TaiI ACGT 2 cut(s) 425, 696
TaqI TCGA 5 cut(s) 269, 281, 558, 759, 952
TaqII GACCGA 1 cut(s) 936
TasI AATT 3 cut(s) 621, 707, 782
TauI GCSGC 4 cut(s) 42, 259, 354, 480
TfiI GAWTC 2 cut(s) 219, 346
Tru1I TTAA 3 cut(s) 338, 729, 837
Tru9I TTAA 3 cut(s) 338, 729, 837
TseFI GTSAC 2 cut(s) 423, 846
TseI GCWGC 6 cut(s) 68, 108, 128, 169, 474, 569
Tsp45I GTSAC 2 cut(s) 423, 846
TspDTI ATGAA 4 cut(s) 17, 47, 437, 900
TspGWI ACGGA 1 cut(s) 221
Tth111I GACNNNGTC 2 cut(s) 382, 410
Van91I CCANNNNNTGG 1 cut(s) 803
VpaK11BI GGWCC 4 cut(s) 294, 399, 794, 941
XapI RAATTY 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 269, 576
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.