Rmu_sc0006237.1_g000001

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006237.1
OG0011040
Physical Location & Seq
Reverse (-)
3392 .. 5596
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006237.1_g000001.1.cds

Sequence Viewer

Length: 726 bp
atgccgccgttctggtcgaccacgacctcgaaggcggtggggtccttactctcccgcggaaacggatacagctccgccagaaagttcaaccggattcgccgcctgagtagcattgccggcatagagaccccgtcggttcagaaatggaccggcgacgacacgtcgcgagttttggcaaatccttttcatgagcaaaggaggcggtttttgggctgcggcgacggtgaagaaggtggtgtgttgtccaaggtttacgaggagaagcgcgtcttggggtattctcctgagcagttattcgatgtggttgctgctgtagacttgtatcatggttttgtcccctggtgccagcggtcagagataattcaaacctatgcggatggatcatttgaggctgagctggagattggtttcaagtttcttgttgaaagttacgtgtcccatgttgaattagaaagaccaaagcgtattaagacaactgtgtcaaacagtacccttttcgatcatctaataaacatctgggaattcaatcctggaccagttcctggagcttgcaacctttatttcttggtggattttaagtttcagtcaccactatatagacaggtggcctctgtgttcttcaaagaggtggtctctaagcttgttggttcattcaatgaccgatgccggctgatatatggaccaggagttcgagttcttgaaaactcatatggacaaagtgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

241

Amino Acids

27.2

Weight (kDa)

8.3

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 542
AccI GTMKAC 2 cut(s) 17, 315
AccII CGCG 3 cut(s) 57, 166, 267
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 521
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 1 cut(s) 542
AflIII ACRYGT 2 cut(s) 159, 432
AgsI TTSAA 9 cut(s) 88, 365, 412, 425, 446, 526, 622, 655, 701
AhdI GACNNNNNGTC 1 cut(s) 160
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 4 cut(s) 338, 529, 541, 682
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AloI GAACNNNNNNTCC 4 cut(s) 672, 678, 704, 710
AluBI AGCT 4 cut(s) 72, 397, 548, 640
AluI AGCT 4 cut(s) 72, 397, 548, 640
Alw26I GTCTC 2 cut(s) 119, 637
AlwI GGATC 1 cut(s) 388
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 2 cut(s) 213, 308
ApoI RAATTY 1 cut(s) 521
ArsI GACNNNNNNTTYG 4 cut(s) 615, 647, 672, 704
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 4 cut(s) 42, 147, 533, 680
AsuHPI GGTGA 2 cut(s) 236, 579
AvaII GGWCC 4 cut(s) 42, 147, 533, 680
BanI GGYRCC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 200, 295
BccI CCATC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 4 cut(s) 340, 531, 543, 684
BciVI GTATCC 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 119, 637
BfmI CTRYAG 1 cut(s) 312
BfuI GTATCC 1 cut(s) 59
BisI GCNGC 5 cut(s) 5, 100, 214, 217, 309
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 5 cut(s) 6, 101, 215, 218, 310
Bme1390I CCNGG 4 cut(s) 340, 531, 543, 684
Bme18I GGWCC 4 cut(s) 42, 147, 533, 680
BmeRI GACNNNNNGTC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 4 cut(s) 42, 147, 533, 680
BmiI GGNNCC 2 cut(s) 43, 344
BmrFI CCNGG 4 cut(s) 340, 531, 543, 684
BmsI GCATC 1 cut(s) 653
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpmI CTGGAG 2 cut(s) 419, 564
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 433
BsaI GGTCTC 2 cut(s) 119, 637
BsaJI CCNNGG 3 cut(s) 55, 246, 338
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse118I RCCGGY 3 cut(s) 116, 149, 666
Bse1I ACTGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 4 cut(s) 340, 531, 543, 684
BseDI CCNNGG 3 cut(s) 55, 246, 338
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 95, 276, 384
BseNI ACTGG 1 cut(s) 536
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 200, 295
Bsh1236I CGCG 3 cut(s) 57, 166, 267
BshFI GGCC 1 cut(s) 608
BshNI GGYRCC 1 cut(s) 342
BsiSI CCGG 4 cut(s) 91, 117, 150, 667
BslFI GGGAC 2 cut(s) 320, 421
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 2 cut(s) 119, 637
BsmFI GGGAC 2 cut(s) 320, 421
BsnI GGCC 1 cut(s) 608
Bso31I GGTCTC 2 cut(s) 119, 637
Bsp143I GATC 2 cut(s) 380, 499
Bsp1720I GCTNAGC 1 cut(s) 393
Bsp68I TCGCGA 1 cut(s) 166
BspANI GGCC 1 cut(s) 608
BspCNI CTCAG 3 cut(s) 96, 277, 385
BspFNI CGCG 3 cut(s) 57, 166, 267
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 43, 344
BspPI GGATC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 342
BspTNI GGTCTC 2 cut(s) 119, 637
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 3 cut(s) 116, 149, 666
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 3 cut(s) 116, 149, 666
BssECI CCNNGG 3 cut(s) 55, 246, 338
BssMI GATC 2 cut(s) 380, 499
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 4 cut(s) 340, 531, 543, 684
Bst4CI ACNGT 3 cut(s) 224, 478, 488
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 4 cut(s) 118, 347, 550, 668
BstDEI CTNAG 4 cut(s) 104, 285, 393, 636
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 3 cut(s) 57, 166, 267
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 2 cut(s) 383, 502
BstMAI GTCTC 2 cut(s) 119, 637
BstMBI GATC 2 cut(s) 380, 499
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 199
BstNI CCWGG 4 cut(s) 340, 531, 543, 684
BstSCI CCNGG 4 cut(s) 338, 529, 541, 682
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 3 cut(s) 57, 166, 267
BstV1I GCAGC 2 cut(s) 200, 295
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 608
BtgI CCRYGG 1 cut(s) 55
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 382
BtuMI TCGCGA 1 cut(s) 166
Cac8I GCNNGC 4 cut(s) 118, 347, 550, 668
CaiI CAGNNNCTG 1 cut(s) 542
CciI TCATGA 1 cut(s) 187
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 3 cut(s) 116, 149, 666
Cfr13I GGNCC 4 cut(s) 42, 147, 533, 680
Cfr42I CCGCGG 1 cut(s) 58
CseI GACGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 489
CviAII CATG 4 cut(s) 188, 326, 440, 723
CviJI RGCY 8 cut(s) 72, 213, 392, 397, 548, 608, 640, 670
CviKI_1 RGCY 8 cut(s) 72, 213, 392, 397, 548, 608, 640, 670
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 4 cut(s) 104, 285, 393, 636
DpnI GATC 2 cut(s) 382, 501
DpnII GATC 2 cut(s) 380, 499
DrdI GACNNNNNNGTC 1 cut(s) 478
DriI GACNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 478
Eam1105I GACNNNNNGTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 246
Eco31I GGTCTC 2 cut(s) 119, 637
Eco47I GGWCC 4 cut(s) 42, 147, 533, 680
EcoO109I RGGNCCY 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 521
EcoRII CCWGG 4 cut(s) 338, 529, 541, 682
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 191, 329, 443, 726
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 320, 421
FatI CATG 4 cut(s) 187, 325, 439, 722
FauI CCCGC 1 cut(s) 62
FauNDI CATATG 1 cut(s) 709
FblI GTMKAC 2 cut(s) 17, 315
Fnu4HI GCNGC 5 cut(s) 5, 100, 214, 217, 309
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 5 cut(s) 5, 100, 214, 217, 309
GlaI GCGC 1 cut(s) 266
GluI GCNGC 5 cut(s) 5, 100, 214, 217, 309
GsuI CTGGAG 2 cut(s) 419, 564
HaeIII GGCC 1 cut(s) 608
HapII CCGG 4 cut(s) 91, 117, 150, 667
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 267
Hin1II CATG 4 cut(s) 191, 329, 443, 726
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 1 cut(s) 94
HpaII CCGG 4 cut(s) 91, 117, 150, 667
HphI GGTGA 2 cut(s) 236, 579
Hpy166II GTNNAC 3 cut(s) 18, 253, 316
Hpy188I TCNGA 2 cut(s) 141, 355
Hpy188III TCNNGA 4 cut(s) 165, 188, 284, 698
Hpy8I GTNNAC 3 cut(s) 18, 253, 316
Hpy99I CGWCG 4 cut(s) 136, 158, 166, 224
HpyAV CCTTC 2 cut(s) 25, 224
HpyCH4III ACNGT 3 cut(s) 224, 478, 488
HpyCH4IV ACGT 2 cut(s) 161, 432
HpyCH4V TGCA 2 cut(s) 552, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 199
HpyF3I CTNAG 4 cut(s) 104, 285, 393, 636
HpySE526I ACGT 2 cut(s) 161, 432
Hsp92II CATG 4 cut(s) 191, 329, 443, 726
HspAI GCGC 1 cut(s) 265
KroI GCCGGC 2 cut(s) 116, 666
KroNI GCCGGC 2 cut(s) 118, 668
KspI CCGCGG 1 cut(s) 58
Kzo9I GATC 2 cut(s) 380, 499
LmnI GCTCC 2 cut(s) 77, 545
Lsp1109I GCAGC 2 cut(s) 200, 295
LweI GCATC 1 cut(s) 653
MaeII ACGT 2 cut(s) 161, 432
MaeIII GTNAC 2 cut(s) 428, 585
MalI GATC 2 cut(s) 382, 501
MboI GATC 2 cut(s) 380, 499
MboII GAAGA 2 cut(s) 239, 610
MluCI AATT 3 cut(s) 360, 446, 521
MnlI CCTC 6 cut(s) 37, 192, 250, 382, 619, 619
MroNI GCCGGC 2 cut(s) 116, 666
MseI TTAA 2 cut(s) 468, 576
MspA1I CMGCKG 2 cut(s) 57, 349
MspI CCGG 4 cut(s) 91, 117, 150, 667
MspR9I CCNGG 4 cut(s) 340, 531, 543, 684
MvaI CCWGG 4 cut(s) 340, 531, 543, 684
MvnI CGCG 3 cut(s) 57, 166, 267
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 199
NaeI GCCGGC 2 cut(s) 118, 668
NdeI CATATG 1 cut(s) 709
NdeII GATC 2 cut(s) 380, 499
NgoMIV GCCGGC 2 cut(s) 116, 666
NlaIII CATG 4 cut(s) 191, 329, 443, 726
NlaIV GGNNCC 2 cut(s) 43, 344
NmuCI GTSAC 1 cut(s) 585
NruI TCGCGA 1 cut(s) 166
PagI TCATGA 1 cut(s) 187
PdiI GCCGGC 2 cut(s) 118, 668
PfeI GAWTC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 542
PfoI TCCNGGA 2 cut(s) 529, 541
PkrI GCNGC 5 cut(s) 6, 101, 215, 218, 310
Ppu21I YACGTR 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 4 cut(s) 338, 529, 541, 682
PspGI CCWGG 4 cut(s) 338, 529, 541, 682
PspN4I GGNNCC 2 cut(s) 43, 344
PspPI GGNCC 4 cut(s) 42, 147, 533, 680
PspPPI RGGWCCY 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 542
PsyI GACNNNGTC 1 cut(s) 130
RruI TCGCGA 1 cut(s) 166
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
SacII CCGCGG 1 cut(s) 58
SalI GTCGAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 468, 576
SatI GCNGC 5 cut(s) 5, 100, 214, 217, 309
Sau3AI GATC 2 cut(s) 380, 499
Sau96I GGNCC 4 cut(s) 42, 147, 533, 680
ScrFI CCNGG 4 cut(s) 340, 531, 543, 684
SfaNI GCATC 1 cut(s) 653
SfcI CTRYAG 1 cut(s) 312
Sfr303I CCGCGG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 58
SinI GGWCC 4 cut(s) 42, 147, 533, 680
Sse9I AATT 3 cut(s) 360, 446, 521
StyD4I CCNGG 4 cut(s) 338, 529, 541, 682
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 3 cut(s) 224, 478, 488
TaiI ACGT 2 cut(s) 164, 435
TaqI TCGA 5 cut(s) 17, 29, 297, 498, 691
TaqII GACCGA 1 cut(s) 675
TasI AATT 3 cut(s) 360, 446, 521
TauI GCSGC 3 cut(s) 7, 102, 219
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 468, 576
Tru9I TTAA 2 cut(s) 468, 576
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 2 cut(s) 213, 308
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 2 cut(s) 176, 639
TspGWI ACGGA 1 cut(s) 78
Tth111I GACNNNGTC 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 4 cut(s) 42, 147, 533, 680
XapI RAATTY 1 cut(s) 521
XmiI GTMKAC 2 cut(s) 17, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.