Rorug06G0362200

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011040
Physical Location & Seq
Forward (+)
51039810 .. 51040034
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0362200.1

Sequence Viewer

Length: 225 bp
ATGGCTAGAACGAAGGTGAAACTACAATACATTGTCAATAAGAGTTCCCGAAGAAACACATTTAGAAAAAGGAAGGAGGGCCTTCTGAAGAAGGTGTACGAGATCACCACTCTCTATGACATCAAGGCTGCGGCGATCATCTACAATCCCTTTGACGCAGAGCCGGAGGTCTTCCTAAGTCATCCGGAAGTCCACGAAATGCTGATAAGGTTCCAAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

74

Amino Acids

8.83

Weight (kDa)

9.69

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 50 1.1e-13 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 28, 97
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 115
BfaI CTAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 129, 132
BlsI GCNGC 2 cut(s) 130, 133
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 184
BseGI GGATG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 164, 185
BsnI GGCC 1 cut(s) 81
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 2 cut(s) 102, 135
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 81
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 212
BssMI GATC 2 cut(s) 102, 135
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 2 cut(s) 105, 138
BstMBI GATC 2 cut(s) 102, 135
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 4 cut(s) 5, 81, 128, 163
CviKI_1 RGCY 4 cut(s) 5, 81, 128, 163
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 104, 137
DpnII GATC 2 cut(s) 102, 135
Eco57I CTGAAG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 79
FaiI YATR 2 cut(s) 117, 221
Fnu4HI GCNGC 2 cut(s) 129, 132
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 129, 132
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 129, 132
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 164, 185
HgaI GACGC 1 cut(s) 164
HpaII CCGG 2 cut(s) 164, 185
HphI GGTGA 2 cut(s) 28, 97
Hpy166II GTNNAC 2 cut(s) 97, 193
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 48, 185
Hpy8I GTNNAC 2 cut(s) 97, 193
HpyAV CCTTC 4 cut(s) 7, 67, 85, 92
HpyF3I CTNAG 1 cut(s) 176
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 102, 135
LpnPI CCDG 2 cut(s) 177, 198
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 1 cut(s) 6
MalI GATC 2 cut(s) 104, 137
MboI GATC 2 cut(s) 102, 135
MboII GAAGA 3 cut(s) 63, 100, 163
MnlI CCTC 2 cut(s) 70, 160
MroI TCCGGA 1 cut(s) 184
MspI CCGG 2 cut(s) 164, 185
NdeII GATC 2 cut(s) 102, 135
NlaIV GGNNCC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 130, 133
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 79
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SatI GCNGC 2 cut(s) 129, 132
Sau3AI GATC 2 cut(s) 102, 135
Sau96I GGNCC 1 cut(s) 79
SetI ASST 4 cut(s) 18, 96, 171, 212
SgeI CNNG 7 cut(s) 18, 60, 112, 136, 176, 197, 206
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 6
TauI GCSGC 1 cut(s) 134
TseI GCWGC 1 cut(s) 128
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.