Rh6AG471100

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011040
Physical Location & Seq
Reverse (-)
65395149 .. 65398097
2949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG471100.1

Sequence Viewer

Length: 582 bp
ATGCCTCCGTTCTGGTCGACCACGACCTCGAAGGCGGTGGGGTCCTTACTCTCCCGCGGAAATGGGTACAGCTCCGCCAGAAAGTTCAATCGGATTCGCCGCCTGAGTAGCATTGCCGGCATAGAGACCCCGTCGGTTCAGAAATGGACCGGCGACGACACGTCGCGAGTTTTGGCAAATCCTTTTCATGAGCAAAGGAGGCGGTTTTTGGGCTGCGGCGACGGTGAAGAAGGTGGTGTGTTGTCCAAGGTTTACGAGGAGAAGCGCGTCTTGGGGTATTCTCCTGAGCAGTTATTCGATGTGGTTGCTGCTGTAGACTTGTATCATGGTTTTGTCCCCTGGTGCCAGCGGTCAGAGATAATGCAAACCTATGCGGATGGATCATTTGATGCTGAGCTGGAGATTGGTTTCAAGTTTCTTGTTGAAAGTTACGTGTCCCATGTTGAATTAGAAAGACCAAAGCGTATTAAGGTATTCACTCTCCTTCAAGCTTTATATGACAATCTTGTTATAAGTATTATTTGCCATGTTTCTTCACTTTTCTGCTTGCTGATAATCAATTGCATTTTAATGGTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

193

Amino Acids

21.77

Weight (kDa)

6.9

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 92 - 158 2e-11 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AccB1I GGYRCC 1 cut(s) 342
AccI GTMKAC 2 cut(s) 17, 315
AccII CGCG 3 cut(s) 57, 166, 267
AciI CCGC 9 cut(s) 35, 55, 57, 75, 100, 202, 216, 349, 374
AclWI GGATC 1 cut(s) 388
AfaI GTAC 1 cut(s) 68
AflIII ACRYGT 2 cut(s) 159, 432
AgsI TTSAA 5 cut(s) 88, 412, 425, 446, 488
AhdI GACNNNNNGTC 1 cut(s) 160
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 1 cut(s) 338
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 72, 397, 491
AluI AGCT 3 cut(s) 72, 397, 491
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 213, 308
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 42, 147
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 2 cut(s) 42, 147
BanI GGYRCC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 200, 295
BccI CCATC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 580
BfmI CTRYAG 1 cut(s) 312
BisI GCNGC 4 cut(s) 100, 214, 217, 309
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 4 cut(s) 101, 215, 218, 310
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 2 cut(s) 42, 147
BmeRI GACNNNNNGTC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 42, 147
BmiI GGNNCC 3 cut(s) 43, 344, 576
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 55, 246, 338
Bse118I RCCGGY 2 cut(s) 116, 149
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 3 cut(s) 55, 246, 338
BseGI GGATG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 95, 276, 384
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 200, 295
Bsh1236I CGCG 3 cut(s) 57, 166, 267
BshNI GGYRCC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 117, 150
BslFI GGGAC 2 cut(s) 320, 421
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 320, 421
Bso31I GGTCTC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 380
Bsp1720I GCTNAGC 1 cut(s) 393
Bsp68I TCGCGA 1 cut(s) 166
BspACI CCGC 9 cut(s) 35, 55, 57, 75, 100, 202, 216, 349, 374
BspCNI CTCAG 3 cut(s) 96, 277, 385
BspFNI CGCG 3 cut(s) 57, 166, 267
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 43, 344, 576
BspPI GGATC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 342
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 116, 149
BssAI RCCGGY 2 cut(s) 116, 149
BssECI CCNNGG 3 cut(s) 55, 246, 338
BssMI GATC 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 3 cut(s) 118, 347, 548
BstDEI CTNAG 3 cut(s) 104, 285, 393
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 3 cut(s) 57, 166, 267
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 1 cut(s) 383
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 380
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 199
BstNI CCWGG 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 3 cut(s) 57, 166, 267
BstV1I GCAGC 2 cut(s) 200, 295
BtgI CCRYGG 1 cut(s) 55
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 382
BtuMI TCGCGA 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 118, 347, 548
CciI TCATGA 1 cut(s) 187
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 2 cut(s) 116, 149
Cfr13I GGNCC 2 cut(s) 42, 147
Cfr42I CCGCGG 1 cut(s) 58
CseI GACGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 67
CviAII CATG 4 cut(s) 188, 326, 440, 527
CviJI RGCY 4 cut(s) 72, 213, 397, 491
CviKI_1 RGCY 4 cut(s) 72, 213, 397, 491
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 3 cut(s) 104, 285, 393
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
DriI GACNNNNNGTC 1 cut(s) 160
Eam1105I GACNNNNNGTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 2 cut(s) 42, 147
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 191, 329, 443, 530
FaiI YATR 9 cut(s) 122, 189, 327, 372, 441, 496, 498, 512, 528
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 320, 421
FatI CATG 4 cut(s) 187, 325, 439, 526
FauI CCCGC 1 cut(s) 62
FblI GTMKAC 2 cut(s) 17, 315
Fnu4HI GCNGC 4 cut(s) 100, 214, 217, 309
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 4 cut(s) 100, 214, 217, 309
FspBI CTAG 1 cut(s) 580
GlaI GCGC 1 cut(s) 266
GluI GCNGC 4 cut(s) 100, 214, 217, 309
GsuI CTGGAG 1 cut(s) 419
HapII CCGG 2 cut(s) 117, 150
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 267
Hin1II CATG 4 cut(s) 191, 329, 443, 530
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 1 cut(s) 94
HpaII CCGG 2 cut(s) 117, 150
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 18, 253, 316
Hpy188I TCNGA 3 cut(s) 93, 141, 355
Hpy188III TCNNGA 3 cut(s) 165, 188, 284
Hpy8I GTNNAC 3 cut(s) 18, 253, 316
Hpy99I CGWCG 4 cut(s) 136, 158, 166, 224
HpyAV CCTTC 3 cut(s) 25, 224, 494
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 2 cut(s) 161, 432
HpyCH4V TGCA 2 cut(s) 364, 564
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 199
HpyF3I CTNAG 3 cut(s) 104, 285, 393
HpySE526I ACGT 2 cut(s) 161, 432
Hsp92II CATG 4 cut(s) 191, 329, 443, 530
HspAI GCGC 1 cut(s) 265
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
KspI CCGCGG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 380
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 9 cut(s) 91, 116, 130, 163, 297, 325, 352, 359, 383
Lsp1109I GCAGC 2 cut(s) 200, 295
LweI GCATC 1 cut(s) 379
MaeI CTAG 1 cut(s) 580
MaeII ACGT 2 cut(s) 161, 432
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 2 cut(s) 239, 525
MfeI CAATTG 1 cut(s) 559
MluCI AATT 2 cut(s) 446, 559
MnlI CCTC 4 cut(s) 15, 37, 192, 250
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 2 cut(s) 468, 569
MslI CAYNNNNRTG 1 cut(s) 569
MspA1I CMGCKG 2 cut(s) 57, 349
MspI CCGG 2 cut(s) 117, 150
MspR9I CCNGG 1 cut(s) 340
MunI CAATTG 1 cut(s) 559
MvaI CCWGG 1 cut(s) 340
MvnI CGCG 3 cut(s) 57, 166, 267
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 199
NaeI GCCGGC 1 cut(s) 118
NdeII GATC 1 cut(s) 380
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 4 cut(s) 191, 329, 443, 530
NlaIV GGNNCC 3 cut(s) 43, 344, 576
NruI TCGCGA 1 cut(s) 166
PagI TCATGA 1 cut(s) 187
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 4 cut(s) 101, 215, 218, 310
Ppu21I YACGTR 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 42
PsiI TTATAA 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 3 cut(s) 43, 344, 576
PspPI GGNCC 2 cut(s) 42, 147
PspPPI RGGWCCY 1 cut(s) 42
PsyI GACNNNGTC 1 cut(s) 130
RruI TCGCGA 1 cut(s) 166
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 569
SacII CCGCGG 1 cut(s) 58
SalI GTCGAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 468, 569
SatI GCNGC 4 cut(s) 100, 214, 217, 309
Sau3AI GATC 1 cut(s) 380
Sau96I GGNCC 2 cut(s) 42, 147
ScrFI CCNGG 1 cut(s) 340
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 312
Sfr303I CCGCGG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 58
SinI GGWCC 2 cut(s) 42, 147
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 2 cut(s) 446, 559
SsiI CCGC 9 cut(s) 35, 55, 57, 75, 100, 202, 216, 349, 374
SspMI CTAG 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 2 cut(s) 164, 435
TaqI TCGA 3 cut(s) 17, 29, 297
TasI AATT 2 cut(s) 446, 559
TauI GCSGC 2 cut(s) 102, 219
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 468, 569
Tru9I TTAA 2 cut(s) 468, 569
TseI GCWGC 2 cut(s) 213, 308
TspDTI ATGAA 1 cut(s) 176
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 42, 147
XmiI GTMKAC 2 cut(s) 17, 315
XspI CTAG 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.