MD15G1082400.v1.1

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011040
Physical Location & Seq
Forward (+)
5651876 .. 5654566
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1082400.v1.1.491

Sequence Viewer

Length: 684 bp
ATGCCGCCGTTCTGGTCGAGTACGACCTCGAAGGCGGTGGGGTCCTTGCTCTCTCGCAGAATCGGTCCCAGGCATCTGGTCCGGTCCAGCCGGAAATTGGACCCGATTCGATGCTTTAGTAGCATTGTGGGCATAGAAACCCCGTCATCATCGGTCCACAAATGGACCACCGATTCCCAGATGGATTTCAATTACAGGTCACGGAGGCAATTTCTCGGCTGCGGCGACGGCGAAGAAGGCGGTGTGTTATCCAAAGTTTATGAGGAGAGGCGCGTAATGGGGTATTCTCCGGAGCAGTTATACAATCGGTCTGACATAATTAAAGCCTATCCGGATGGATCATTTGATGCTGAGCTCGAGATTGGGTTTAAATTTCTTGTTGAAAGTTACACTTCCCATGTCGAATTAGAGAGACCAAAGCGTATAAAGTCAACTGTATCAAATAGTTCCCTTTTCGATCATCTCATAAACATCTGGGAATTCAATCCGGGGCCAGTTCCAGGATCTTGCAGCCTTTATTTCTTGGTGGATTTTAAATTCCAGTCGCCACTTTACCGACAGGTGGCATCGGTATTCTTCAAGGAGGTGGTCTCTAAGCTTGTTGGTTCATTTAATGAGCGATGTCGTTTGATATATGGACCAGGAGTTCGAGTACTTGAAAACTCATATGGACAAAGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

228

Amino Acids

25.85

Weight (kDa)

9.16

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 109 - 204 2.5e-10 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AccIII TCCGGA 2 cut(s) 289, 331
AciI CCGC 4 cut(s) 5, 35, 222, 240
AclWI GGATC 2 cut(s) 346, 511
AcsI RAATTY 3 cut(s) 371, 479, 536
AfaI GTAC 2 cut(s) 22, 654
AfiI CCNNNNNNNGG 3 cut(s) 97, 500, 562
AgsI TTSAA 5 cut(s) 190, 383, 484, 580, 659
AjnI CCWGG 3 cut(s) 68, 499, 640
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
AluBI AGCT 2 cut(s) 355, 598
AluI AGCT 2 cut(s) 355, 598
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 406, 595
AlwI GGATC 2 cut(s) 346, 511
Ama87I CYCGRG 1 cut(s) 356
Aor13HI TCCGGA 2 cut(s) 289, 331
AoxI GGCC 1 cut(s) 491
ApeKI GCWGC 2 cut(s) 219, 510
ApoI RAATTY 3 cut(s) 371, 479, 536
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 9 cut(s) 42, 65, 79, 84, 100, 154, 165, 491, 638
AsuC2I CCSGG 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 8 cut(s) 42, 65, 79, 84, 100, 154, 165, 638
BanII GRGCYC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 206, 522
BccI CCATC 2 cut(s) 175, 329
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 3 cut(s) 70, 501, 642
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 2 cut(s) 406, 595
BisI GCNGC 4 cut(s) 5, 220, 223, 511
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 4 cut(s) 6, 221, 224, 512
BmcAI AGTACT 1 cut(s) 654
Bme1390I CCNGG 4 cut(s) 70, 489, 501, 642
Bme18I GGWCC 8 cut(s) 42, 65, 79, 84, 100, 154, 165, 638
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 9 cut(s) 42, 65, 79, 84, 100, 154, 165, 491, 638
BmiI GGNNCC 4 cut(s) 43, 67, 102, 492
BmrFI CCNGG 4 cut(s) 70, 489, 501, 642
BmsI GCATC 4 cut(s) 82, 101, 337, 575
BplI GAGNNNNNCTC 2 cut(s) 575, 607
Bpu1102I GCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 489
BsaI GGTCTC 2 cut(s) 406, 595
BsaJI CCNNGG 2 cut(s) 68, 488
BsaWI WCCGGW 3 cut(s) 81, 289, 331
BsaXI ACNNNNNCTCC 2 cut(s) 636, 666
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 500, 562
Bse1I ACTGG 2 cut(s) 494, 541
BseAI TCCGGA 2 cut(s) 289, 331
BseBI CCWGG 3 cut(s) 70, 501, 642
BseDI CCNNGG 2 cut(s) 68, 488
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 3 cut(s) 97, 500, 562
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 2 cut(s) 494, 541
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 206, 522
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 5 cut(s) 82, 91, 290, 332, 488
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 3 cut(s) 97, 500, 562
BsmAI GTCTC 2 cut(s) 406, 595
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 1 cut(s) 493
Bso31I GGTCTC 2 cut(s) 406, 595
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 357
Bsp13I TCCGGA 2 cut(s) 289, 331
Bsp143I GATC 3 cut(s) 338, 457, 503
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 4 cut(s) 5, 35, 222, 240
BspANI GGCC 1 cut(s) 493
BspCNI CTCAG 1 cut(s) 343
BspEI TCCGGA 2 cut(s) 289, 331
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 4 cut(s) 43, 67, 102, 492
BspPI GGATC 2 cut(s) 346, 511
BspTNI GGTCTC 2 cut(s) 406, 595
BsrI ACTGG 2 cut(s) 494, 541
BssECI CCNNGG 2 cut(s) 68, 488
BssMI GATC 3 cut(s) 338, 457, 503
Bst2UI CCWGG 3 cut(s) 70, 501, 642
Bst4CI ACNGT 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 351, 594
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 3 cut(s) 341, 460, 506
BstMAI GTCTC 2 cut(s) 406, 595
BstMBI GATC 3 cut(s) 338, 457, 503
BstMWI GCNNNNNNNGC 4 cut(s) 120, 129, 228, 237
BstNI CCWGG 3 cut(s) 70, 501, 642
BstSCI CCNGG 4 cut(s) 68, 487, 499, 640
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 206, 522
BstX2I RGATCY 1 cut(s) 503
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 1 cut(s) 503
BsuRI GGCC 1 cut(s) 493
BtgZI GCGATG 1 cut(s) 634
BtsCI GGATG 1 cut(s) 340
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 9 cut(s) 42, 65, 79, 84, 100, 154, 165, 491, 638
Csp6I GTAC 2 cut(s) 21, 653
CviAII CATG 2 cut(s) 398, 681
CviJI RGCY 7 cut(s) 90, 219, 326, 355, 493, 513, 598
CviKI_1 RGCY 7 cut(s) 90, 219, 326, 355, 493, 513, 598
CviQI GTAC 2 cut(s) 21, 653
DdeI CTNAG 2 cut(s) 351, 594
DpnI GATC 3 cut(s) 340, 459, 505
DpnII GATC 3 cut(s) 338, 457, 503
DraI TTTAAA 2 cut(s) 370, 535
Ecl136II GAGCTC 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 357
Eco31I GGTCTC 2 cut(s) 406, 595
Eco47I GGWCC 8 cut(s) 42, 65, 79, 84, 100, 154, 165, 638
Eco53kI GAGCTC 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 3 cut(s) 68, 499, 640
EcoT38I GRGCYC 1 cut(s) 357
FaeI CATG 2 cut(s) 401, 684
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 1 cut(s) 51
FatI CATG 2 cut(s) 397, 680
FauNDI CATATG 1 cut(s) 667
Fnu4HI GCNGC 4 cut(s) 5, 220, 223, 511
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 4 cut(s) 5, 220, 223, 511
GlaI GCGC 1 cut(s) 272
GluI GCNGC 4 cut(s) 5, 220, 223, 511
HaeIII GGCC 1 cut(s) 493
HapII CCGG 5 cut(s) 82, 91, 290, 332, 488
HhaI GCGC 1 cut(s) 273
Hin1II CATG 2 cut(s) 401, 684
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 3 cut(s) 60, 106, 173
HpaII CCGG 5 cut(s) 82, 91, 290, 332, 488
Hpy166II GTNNAC 2 cut(s) 157, 432
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 3 cut(s) 290, 332, 358
Hpy8I GTNNAC 2 cut(s) 157, 432
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 25, 230
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 1 cut(s) 510
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 129, 228, 237
HpyF3I CTNAG 2 cut(s) 351, 594
Hsp92II CATG 2 cut(s) 401, 684
HspAI GCGC 1 cut(s) 271
Kpn2I TCCGGA 2 cut(s) 289, 331
Kzo9I GATC 3 cut(s) 338, 457, 503
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 206, 522
LweI GCATC 4 cut(s) 82, 101, 337, 575
MaeIII GTNAC 2 cut(s) 198, 386
MalI GATC 3 cut(s) 340, 459, 505
MboI GATC 3 cut(s) 338, 457, 503
MboII GAAGA 2 cut(s) 245, 568
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 8 cut(s) 95, 190, 209, 318, 371, 404, 479, 536
MnlI CCTC 5 cut(s) 37, 198, 256, 261, 577
MroI TCCGGA 2 cut(s) 289, 331
MseI TTAA 4 cut(s) 321, 369, 534, 612
MspI CCGG 5 cut(s) 82, 91, 290, 332, 488
MspR9I CCNGG 4 cut(s) 70, 489, 501, 642
MvaI CCWGG 3 cut(s) 70, 501, 642
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 4 cut(s) 120, 129, 228, 237
NciI CCSGG 1 cut(s) 489
NdeI CATATG 1 cut(s) 667
NdeII GATC 3 cut(s) 338, 457, 503
NlaIII CATG 2 cut(s) 401, 684
NlaIV GGNNCC 4 cut(s) 43, 67, 102, 492
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 198
PaeR7I CTCGAG 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 3 cut(s) 60, 106, 173
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 4 cut(s) 6, 221, 224, 512
PpuMI RGGWCCY 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 3 cut(s) 68, 499, 640
PspGI CCWGG 3 cut(s) 68, 499, 640
PspN4I GGNNCC 4 cut(s) 43, 67, 102, 492
PspPI GGNCC 9 cut(s) 42, 65, 79, 84, 100, 154, 165, 491, 638
PspPPI RGGWCCY 1 cut(s) 42
PsuI RGATCY 1 cut(s) 503
RsaI GTAC 2 cut(s) 22, 654
RsaNI GTAC 2 cut(s) 21, 653
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 4 cut(s) 321, 369, 534, 612
SatI GCNGC 4 cut(s) 5, 220, 223, 511
Sau3AI GATC 3 cut(s) 338, 457, 503
Sau96I GGNCC 9 cut(s) 42, 65, 79, 84, 100, 154, 165, 491, 638
ScaI AGTACT 1 cut(s) 654
ScrFI CCNGG 4 cut(s) 70, 489, 501, 642
SduI GDGCHC 1 cut(s) 357
SetI ASST 6 cut(s) 29, 200, 357, 564, 588, 600
SfaNI GCATC 4 cut(s) 82, 101, 337, 575
Sfr274I CTCGAG 1 cut(s) 356
SinI GGWCC 8 cut(s) 42, 65, 79, 84, 100, 154, 165, 638
SlaI CTCGAG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 8 cut(s) 95, 190, 209, 318, 371, 404, 479, 536
SsiI CCGC 4 cut(s) 5, 35, 222, 240
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 4 cut(s) 68, 487, 499, 640
TaaI ACNGT 1 cut(s) 436
TaqI TCGA 7 cut(s) 17, 29, 109, 357, 402, 456, 649
TaqII GACCGA 3 cut(s) 53, 142, 297
TasI AATT 8 cut(s) 95, 190, 209, 318, 371, 404, 479, 536
TatI WGTACW 1 cut(s) 652
TauI GCSGC 2 cut(s) 7, 225
TfiI GAWTC 3 cut(s) 60, 106, 173
Tru1I TTAA 4 cut(s) 321, 369, 534, 612
Tru9I TTAA 4 cut(s) 321, 369, 534, 612
TseFI GTSAC 1 cut(s) 198
TseI GCWGC 2 cut(s) 219, 510
Tsp45I GTSAC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 597
TspGWI ACGGA 1 cut(s) 217
VpaK11BI GGWCC 8 cut(s) 42, 65, 79, 84, 100, 154, 165, 638
XapI RAATTY 3 cut(s) 371, 479, 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.