Rh6BG482100

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011040
Physical Location & Seq
Reverse (-)
68740931 .. 68743923
2993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG482100.1

Sequence Viewer

Length: 564 bp
ATGCCGCCGTTCTGGTCGACCACGACCTCGAAGGCGGTGGGGTCCTTACTCTCCCGCGGGAATGGATACAGCTCCGCCAGAAAGTTCAATCGGATTCGCCGCCTGAGTAGCATTGCCGGCATAGAGACCCCGTCGGTCCAGAAATCGCGAGTTTTGGCAAATCCTTTTCATGAGCAAAGGAGGCGGTTTTTGGGCTGCGGCGACGGTGAAGAAGGTGGTGTGTTGTCCAAGGTTTACGAGGAGAAGCGCGTCTTGGGGTATTCTCCTGAGCAGTTATTCGATGTGGTTGCTGCTGTAGACTTGTATCATGGTTTTGTCCCCTGGTGCCAGCGGTCAGAGAAAATTCAAACCTATGCGGATGGATCATTTGATGCTGAGCTGGAGATTGGTTTCAAGTTTCTTGTTGAAAGTTACGTGTCCCATGTTGAATTAGAAAGACCAAAGCGTATTAAGGTATTCACTCTCCTTCAAGCTTTATATGACAATCTTGTTATAAGTATTATTTGCCATGTTTCTTCACTTTTCTGCTTGCTTATAATCAATTGCATTTTAATGGTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

187

Amino Acids

21.1

Weight (kDa)

8.6

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 86 - 152 8.1e-11 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 494, 536
AccB1I GGYRCC 1 cut(s) 324
AccI GTMKAC 2 cut(s) 17, 297
AccII CGCG 3 cut(s) 57, 148, 249
AclWI GGATC 1 cut(s) 370
AcsI RAATTY 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 6 cut(s) 88, 347, 394, 407, 428, 470
AjnI CCWGG 1 cut(s) 320
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 3 cut(s) 72, 379, 473
AluI AGCT 3 cut(s) 72, 379, 473
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 370
ApeKI GCWGC 2 cut(s) 195, 290
ApoI RAATTY 1 cut(s) 342
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 42, 136
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 2 cut(s) 42, 136
BanI GGYRCC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 182, 277
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 1 cut(s) 322
BciVI GTATCC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 562
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 59
BisI GCNGC 5 cut(s) 5, 100, 196, 199, 291
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 5 cut(s) 6, 101, 197, 200, 292
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 2 cut(s) 42, 136
BmgT120I GGNCC 2 cut(s) 42, 136
BmiI GGNNCC 3 cut(s) 43, 326, 558
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 401
Bpu10I CCTNAGC 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 415
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 55, 228, 320
Bse118I RCCGGY 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 3 cut(s) 55, 228, 320
BseGI GGATG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 95, 258, 366
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 182, 277
Bsh1236I CGCG 3 cut(s) 57, 148, 249
BshNI GGYRCC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 302, 403
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 302, 403
Bso31I GGTCTC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 362
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp68I TCGCGA 1 cut(s) 148
BspCNI CTCAG 3 cut(s) 96, 259, 367
BspFNI CGCG 3 cut(s) 57, 148, 249
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 3 cut(s) 43, 326, 558
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 3 cut(s) 55, 228, 320
BssMI GATC 1 cut(s) 362
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 415
BstC8I GCNNGC 3 cut(s) 118, 329, 530
BstDEI CTNAG 3 cut(s) 104, 267, 375
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 3 cut(s) 57, 148, 249
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 365
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 362
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 181
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 3 cut(s) 57, 148, 249
BstV1I GCAGC 2 cut(s) 182, 277
BsuI GTATCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 364
BtuMI TCGCGA 1 cut(s) 148
Cac8I GCNNGC 3 cut(s) 118, 329, 530
CciI TCATGA 1 cut(s) 169
CfoI GCGC 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 42, 136
Cfr42I CCGCGG 1 cut(s) 58
CseI GACGC 1 cut(s) 238
CviAII CATG 4 cut(s) 170, 308, 422, 509
CviJI RGCY 4 cut(s) 72, 195, 379, 473
CviKI_1 RGCY 4 cut(s) 72, 195, 379, 473
DdeI CTNAG 3 cut(s) 104, 267, 375
DpnI GATC 1 cut(s) 364
DpnII GATC 1 cut(s) 362
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 2 cut(s) 42, 136
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 4 cut(s) 173, 311, 425, 512
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 302, 403
FatI CATG 4 cut(s) 169, 307, 421, 508
FauI CCCGC 2 cut(s) 50, 62
FblI GTMKAC 2 cut(s) 17, 297
Fnu4HI GCNGC 5 cut(s) 5, 100, 196, 199, 291
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 5 cut(s) 5, 100, 196, 199, 291
FspBI CTAG 1 cut(s) 562
GlaI GCGC 1 cut(s) 248
GluI GCNGC 5 cut(s) 5, 100, 196, 199, 291
GsuI CTGGAG 1 cut(s) 401
HapII CCGG 1 cut(s) 117
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 249
Hin1II CATG 4 cut(s) 173, 311, 425, 512
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 3 cut(s) 18, 235, 298
Hpy188I TCNGA 2 cut(s) 93, 337
Hpy188III TCNNGA 4 cut(s) 139, 147, 170, 266
Hpy8I GTNNAC 3 cut(s) 18, 235, 298
Hpy99I CGWCG 2 cut(s) 136, 206
HpyAV CCTTC 3 cut(s) 25, 206, 476
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 1 cut(s) 546
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 181
HpyF3I CTNAG 3 cut(s) 104, 267, 375
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 4 cut(s) 173, 311, 425, 512
HspAI GCGC 1 cut(s) 247
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
KspI CCGCGG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 362
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 9 cut(s) 91, 116, 130, 152, 279, 307, 334, 341, 365
Lsp1109I GCAGC 2 cut(s) 182, 277
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 562
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 364
MboI GATC 1 cut(s) 362
MboII GAAGA 2 cut(s) 221, 507
MfeI CAATTG 1 cut(s) 541
MluCI AATT 3 cut(s) 342, 428, 541
MnlI CCTC 3 cut(s) 37, 174, 232
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 2 cut(s) 450, 551
MslI CAYNNNNRTG 1 cut(s) 551
MspA1I CMGCKG 2 cut(s) 57, 331
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 322
MunI CAATTG 1 cut(s) 541
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 3 cut(s) 57, 148, 249
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 181
NaeI GCCGGC 1 cut(s) 118
NdeII GATC 1 cut(s) 362
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 4 cut(s) 173, 311, 425, 512
NlaIV GGNNCC 3 cut(s) 43, 326, 558
NruI TCGCGA 1 cut(s) 148
PagI TCATGA 1 cut(s) 169
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 5 cut(s) 6, 101, 197, 200, 292
Ppu21I YACGTR 1 cut(s) 415
PpuMI RGGWCCY 1 cut(s) 42
PsiI TTATAA 2 cut(s) 494, 536
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 43, 326, 558
PspPI GGNCC 2 cut(s) 42, 136
PspPPI RGGWCCY 1 cut(s) 42
PsyI GACNNNGTC 1 cut(s) 130
RruI TCGCGA 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 551
SacII CCGCGG 1 cut(s) 58
SalI GTCGAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 450, 551
SatI GCNGC 5 cut(s) 5, 100, 196, 199, 291
Sau3AI GATC 1 cut(s) 362
Sau96I GGNCC 2 cut(s) 42, 136
ScrFI CCNGG 1 cut(s) 322
SetI ASST 9 cut(s) 29, 74, 217, 234, 353, 381, 417, 456, 475
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 294
Sfr303I CCGCGG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 58
SinI GGWCC 2 cut(s) 42, 136
SmiMI CAYNNNNRTG 1 cut(s) 551
Sse9I AATT 3 cut(s) 342, 428, 541
SspMI CTAG 1 cut(s) 562
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 417
TaqI TCGA 3 cut(s) 17, 29, 279
TaqII GACCGA 1 cut(s) 124
TasI AATT 3 cut(s) 342, 428, 541
TauI GCSGC 3 cut(s) 7, 102, 201
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 450, 551
Tru9I TTAA 2 cut(s) 450, 551
TseI GCWGC 2 cut(s) 195, 290
TspDTI ATGAA 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 42, 136
XapI RAATTY 1 cut(s) 342
XmiI GTMKAC 2 cut(s) 17, 297
XspI CTAG 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.