FvH4_2g34410

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011040
Physical Location & Seq
Forward (+)
25570719 .. 25573404
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34410.t2

Sequence Viewer

Length: 756 bp
ATGCCGCCGTTCTGGTCGAGCACGGCCTCGAAGGCGGTGGGGTCCTTACTCTCTCGTGGACATGGAGCCAAGCATCATCATCATCTGTACACTTCCGCGAGAAACTTCAATCGGATTCGCCGCCTGAGTAGCATTGCCGGCATAGAGACCCCGTCGGTTCGGAAATGGACCGGCGATGGTGTCAGCAACACGTCACGAGTTTTGACGAATCCTTTTCATGAGCAAAGGCGGCGGTTTTTGGGCTGCGGCGACGGTGAGGAAGGCGGCGTGTTATCCAAGGTTTACGAGGAGAAGCGCGTCTTGGGGTATTCTCCTGAGCAGTTGTTTGATGTGGTTGCTGCTGTAGACTTGTATCATGGTTTTGTCCCCTGGTGTCAGCGGTCGGAGATAGTTCATACCTATGCAGATGGCTCATTTGATGCTGAGCTGGAGATTGGTTTCAAGTTTCTTGTTGAAAGTTATGTGTCCCATGTTGAGTTAGAAAGACCAAAGCGTATAAAGACAACTGTGTCAAACAGTACCCTTTTTGATCATCTAATAAACATCTGGGAGTTCAATCCTGGACCAGTTCCAGGAGCTTGCAACCTTTATTTCTTGGTGGATTTTAAGTTTCAGTCACCACTTTATAGACAGGTGGCCTCTGTGTTCTTCAAAGAGGTGGTCTCTAAGCTTGTTGGTTCATTCAATGACCGCTGCCGGTTGATATATGGACCAGGAGTTCAAGTTCATGAAAACTCATATGGACAAAGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

252

Amino Acids

28.41

Weight (kDa)

8.84

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 102 - 167 6.4e-11 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 508
AccI GTMKAC 1 cut(s) 345
AccII CGCG 2 cut(s) 98, 297
AfaI GTAC 2 cut(s) 89, 520
AfiI CCNNNNNNNGG 1 cut(s) 572
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 7 cut(s) 109, 442, 455, 556, 652, 685, 722
AjiI CACGTC 1 cut(s) 192
AjnI CCWGG 4 cut(s) 368, 559, 571, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AloI GAACNNNNNNTCC 4 cut(s) 702, 708, 734, 740
AluBI AGCT 3 cut(s) 427, 578, 670
AluI AGCT 3 cut(s) 427, 578, 670
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 2 cut(s) 140, 667
AoxI GGCC 2 cut(s) 24, 636
ApeKI GCWGC 3 cut(s) 243, 338, 693
ArsI GACNNNNNNTTYG 2 cut(s) 645, 677
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 4 cut(s) 42, 168, 563, 710
AsuHPI GGTGA 2 cut(s) 266, 609
AvaII GGWCC 4 cut(s) 42, 168, 563, 710
BauI CACGAG 2 cut(s) 54, 195
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 230, 325, 680
BccI CCATC 2 cut(s) 170, 401
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 4 cut(s) 370, 561, 573, 714
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 2 cut(s) 140, 667
BfmI CTRYAG 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 8 cut(s) 5, 121, 230, 244, 247, 265, 339, 694
BlpI GCTNAGC 1 cut(s) 423
BlsI GCNGC 8 cut(s) 6, 122, 231, 245, 248, 266, 340, 695
Bme1390I CCNGG 4 cut(s) 370, 561, 573, 714
Bme18I GGWCC 4 cut(s) 42, 168, 563, 710
BmgBI CACGTC 1 cut(s) 192
BmgT120I GGNCC 4 cut(s) 42, 168, 563, 710
BmiI GGNNCC 2 cut(s) 43, 67
BmrFI CCNGG 4 cut(s) 370, 561, 573, 714
BmsI GCATC 2 cut(s) 82, 409
BplI GAGNNNNNCTC 2 cut(s) 647, 679
BpmI CTGGAG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 423
BsaI GGTCTC 2 cut(s) 140, 667
BsaJI CCNNGG 2 cut(s) 276, 368
BsaXI ACNNNNNCTCC 2 cut(s) 708, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse118I RCCGGY 3 cut(s) 137, 170, 696
Bse1I ACTGG 1 cut(s) 566
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 4 cut(s) 370, 561, 573, 714
BseDI CCNNGG 2 cut(s) 276, 368
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 116, 306, 414
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 3 cut(s) 230, 325, 680
Bsh1236I CGCG 2 cut(s) 98, 297
Bsh1285I CGRYCG 1 cut(s) 383
BshFI GGCC 2 cut(s) 26, 638
BsiEI CGRYCG 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 3 cut(s) 138, 171, 697
BslFI GGGAC 2 cut(s) 350, 451
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 2 cut(s) 140, 667
BsmFI GGGAC 2 cut(s) 350, 451
BsnI GGCC 2 cut(s) 26, 638
Bso31I GGTCTC 2 cut(s) 140, 667
Bsp1286I GDGCHC 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 1 cut(s) 529
Bsp1720I GCTNAGC 1 cut(s) 423
BspANI GGCC 2 cut(s) 26, 638
BspCNI CTCAG 3 cut(s) 117, 307, 415
BspFNI CGCG 2 cut(s) 98, 297
BspHI TCATGA 2 cut(s) 217, 727
BspLI GGNNCC 2 cut(s) 43, 67
BspTNI GGTCTC 2 cut(s) 140, 667
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 3 cut(s) 137, 170, 696
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 3 cut(s) 137, 170, 696
BssECI CCNNGG 2 cut(s) 276, 368
BssMI GATC 1 cut(s) 529
BssSI CACGAG 2 cut(s) 54, 195
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 2 cut(s) 54, 195
Bst2UI CCWGG 4 cut(s) 370, 561, 573, 714
Bst4CI ACNGT 3 cut(s) 254, 508, 518
BstAUI TGTACA 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 139, 580
BstDEI CTNAG 4 cut(s) 125, 315, 423, 666
BstFNI CGCG 2 cut(s) 98, 297
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 2 cut(s) 140, 667
BstMBI GATC 1 cut(s) 529
BstMCI CGRYCG 1 cut(s) 383
BstMWI GCNNNNNNNGC 4 cut(s) 32, 129, 138, 229
BstNI CCWGG 4 cut(s) 370, 561, 573, 714
BstSCI CCNGG 4 cut(s) 368, 559, 571, 712
BstSFI CTRYAG 1 cut(s) 342
BstUI CGCG 2 cut(s) 98, 297
BstV1I GCAGC 3 cut(s) 230, 325, 680
BsuRI GGCC 2 cut(s) 26, 638
BtgZI GCGATG 1 cut(s) 189
BtrI CACGTC 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 139, 580
CciI TCATGA 2 cut(s) 217, 727
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 3 cut(s) 137, 170, 696
Cfr13I GGNCC 4 cut(s) 42, 168, 563, 710
CseI GACGC 1 cut(s) 286
Csp6I GTAC 2 cut(s) 88, 519
CviAII CATG 5 cut(s) 62, 218, 356, 470, 728
CviJI RGCY 8 cut(s) 26, 68, 243, 411, 427, 578, 638, 670
CviKI_1 RGCY 8 cut(s) 26, 68, 243, 411, 427, 578, 638, 670
CviQI GTAC 2 cut(s) 88, 519
DdeI CTNAG 4 cut(s) 125, 315, 423, 666
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
DrdI GACNNNNNNGTC 1 cut(s) 508
DseDI GACNNNNNNGTC 1 cut(s) 508
Eco130I CCWWGG 1 cut(s) 276
Eco31I GGTCTC 2 cut(s) 140, 667
Eco47I GGWCC 4 cut(s) 42, 168, 563, 710
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 4 cut(s) 368, 559, 571, 712
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 5 cut(s) 65, 221, 359, 473, 731
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 2 cut(s) 350, 451
FatI CATG 5 cut(s) 61, 217, 355, 469, 727
FauNDI CATATG 1 cut(s) 739
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 8 cut(s) 5, 121, 230, 244, 247, 265, 339, 694
Fsp4HI GCNGC 8 cut(s) 5, 121, 230, 244, 247, 265, 339, 694
GlaI GCGC 1 cut(s) 296
GluI GCNGC 8 cut(s) 5, 121, 230, 244, 247, 265, 339, 694
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 2 cut(s) 26, 638
HapII CCGG 3 cut(s) 138, 171, 697
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 297
Hin1II CATG 5 cut(s) 65, 221, 359, 473, 731
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 2 cut(s) 115, 208
HpaII CCGG 3 cut(s) 138, 171, 697
HphI GGTGA 2 cut(s) 266, 609
Hpy166II GTNNAC 4 cut(s) 59, 90, 283, 346
Hpy188I TCNGA 3 cut(s) 114, 162, 385
Hpy188III TCNNGA 4 cut(s) 195, 218, 314, 728
Hpy8I GTNNAC 4 cut(s) 59, 90, 283, 346
Hpy99I CGWCG 2 cut(s) 157, 254
HpyAV CCTTC 2 cut(s) 25, 254
HpyCH4III ACNGT 3 cut(s) 254, 508, 518
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 404, 582
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 129, 138, 229
HpyF3I CTNAG 4 cut(s) 125, 315, 423, 666
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 5 cut(s) 65, 221, 359, 473, 731
HspAI GCGC 1 cut(s) 295
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 2 cut(s) 65, 575
Lsp1109I GCAGC 3 cut(s) 230, 325, 680
LweI GCATC 2 cut(s) 82, 409
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 2 cut(s) 192, 615
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MboII GAAGA 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 5 cut(s) 37, 250, 280, 649, 649
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 1 cut(s) 606
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 2 cut(s) 379, 693
MspI CCGG 3 cut(s) 138, 171, 697
MspR9I CCNGG 4 cut(s) 370, 561, 573, 714
MvaI CCWGG 4 cut(s) 370, 561, 573, 714
MvnI CGCG 2 cut(s) 98, 297
MwoI GCNNNNNNNGC 4 cut(s) 32, 129, 138, 229
NaeI GCCGGC 1 cut(s) 139
NdeI CATATG 1 cut(s) 739
NdeII GATC 1 cut(s) 529
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 5 cut(s) 65, 221, 359, 473, 731
NlaIV GGNNCC 2 cut(s) 43, 67
NmuCI GTSAC 2 cut(s) 192, 615
PagI TCATGA 2 cut(s) 217, 727
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 115, 208
PflFI GACNNNGTC 1 cut(s) 151
PfoI TCCNGGA 2 cut(s) 559, 571
PkrI GCNGC 8 cut(s) 6, 122, 231, 245, 248, 266, 340, 695
PpuMI RGGWCCY 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 4 cut(s) 368, 559, 571, 712
PspGI CCWGG 4 cut(s) 368, 559, 571, 712
PspN4I GGNNCC 2 cut(s) 43, 67
PspPI GGNCC 4 cut(s) 42, 168, 563, 710
PspPPI RGGWCCY 1 cut(s) 42
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 2 cut(s) 89, 520
RsaNI GTAC 2 cut(s) 88, 519
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 8 cut(s) 5, 121, 230, 244, 247, 265, 339, 694
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 4 cut(s) 42, 168, 563, 710
ScrFI CCNGG 4 cut(s) 370, 561, 573, 714
SduI GDGCHC 1 cut(s) 23
SetI ASST 9 cut(s) 194, 282, 401, 429, 580, 588, 636, 660, 672
SfaNI GCATC 2 cut(s) 82, 409
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 4 cut(s) 42, 168, 563, 710
SmiMI CAYNNNNRTG 1 cut(s) 399
StyD4I CCNGG 4 cut(s) 368, 559, 571, 712
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 254, 508, 518
TaiI ACGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 17, 29
TatI WGTACW 1 cut(s) 87
TauI GCSGC 5 cut(s) 7, 123, 232, 249, 267
TfiI GAWTC 2 cut(s) 115, 208
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TseFI GTSAC 2 cut(s) 192, 615
TseI GCWGC 3 cut(s) 243, 338, 693
Tsp45I GTSAC 2 cut(s) 192, 615
TspDTI ATGAA 5 cut(s) 206, 383, 669, 716, 744
Tth111I GACNNNGTC 1 cut(s) 151
VpaK11BI GGWCC 4 cut(s) 42, 168, 563, 710
XmiI GTMKAC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.