Rroxscaffold_7G00160730

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011040
Physical Location & Seq
Forward (+)
3657449 .. 3660037
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160730.1

Sequence Viewer

Length: 735 bp
ATGCCGCCGTTCTGGTCGACCACGACCTCGAAGGCGGTGGGGTCCTTACTCTCCCGCGGAAATGGATACAGCTCCGCCAGAAAGTTCAGTAGGATTCGCCGCCTGAGTAGCATTGCCGGCATAGAGACCCCGTCGGTTCAGAAATGGACCGGCGACCGTGTCAGCAACACGTCACGAGTTTTGGCAAATCCTTTTCATGAGCAAAGGAGGCGGTTTTTGGGCTGCGGCGACGGTGAAGAAGGTGGTGTGTTGTCCAAGGTTTACGAGGAGAAGCGCGTCTTGGGGTATTCTCCTGAGCAGTTATTCGATGTGGTTGCTGCTGTAGACTTGTATCATGGTTTTGTCCCCTGGTGCCAGCGGTCAGAGATAATTCAAACCTATGCGGATGGATCATTTGATGCTGAGCTGGAGATTGGTTTCAAGTTTCTTGTTGAAAGTTACGTGTCCCATGTTGAATTAGAAAGACCAAAGCGTATTAAGACAACTGTGTCAAACAGTACCCTTTTCGATCATCTAATAAACATCTGGGAATTCAATCCTGGACCAGTTCCTGGAGCTTGCAACCTTTATTTCTTGGTGGATTTTAAGTTTCAGTCACCACTTTATAGACAGGTGGCCTCTGTGTTCTTCAAAGAGGTGGTCTCTAAGCTTGTTGGTTCATTCAATGACCGATGCCAGCTGATATATGGACCAGGAGTTCGAGTTCTTGAAAACTCATATGGACAAAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

244

Amino Acids

27.47

Weight (kDa)

8.62

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 95 - 221 1.5e-21 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 487
AccB1I GGYRCC 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 551
AccI GTMKAC 2 cut(s) 17, 324
AccII CGCG 2 cut(s) 57, 276
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 530
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 551
AflIII ACRYGT 2 cut(s) 168, 441
AgsI TTSAA 8 cut(s) 374, 421, 434, 455, 535, 631, 664, 710
AjiI CACGTC 1 cut(s) 171
AjnI CCWGG 4 cut(s) 347, 538, 550, 691
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AloI GAACNNNNNNTCC 4 cut(s) 681, 687, 713, 719
AluBI AGCT 5 cut(s) 72, 406, 557, 649, 679
AluI AGCT 5 cut(s) 72, 406, 557, 649, 679
Alw26I GTCTC 2 cut(s) 119, 646
AlwI GGATC 1 cut(s) 397
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 2 cut(s) 222, 317
ApoI RAATTY 1 cut(s) 530
ArsI GACNNNNNNTTYG 4 cut(s) 624, 656, 681, 713
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 4 cut(s) 42, 147, 542, 689
AsuHPI GGTGA 2 cut(s) 245, 588
AvaII GGWCC 4 cut(s) 42, 147, 542, 689
BanI GGYRCC 1 cut(s) 351
BauI CACGAG 1 cut(s) 174
BbvI GCAGC 2 cut(s) 209, 304
BccI CCATC 1 cut(s) 380
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 4 cut(s) 349, 540, 552, 693
BciVI GTATCC 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 119, 646
BfmI CTRYAG 1 cut(s) 321
BfuI GTATCC 1 cut(s) 59
BisI GCNGC 5 cut(s) 5, 100, 223, 226, 318
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 5 cut(s) 6, 101, 224, 227, 319
Bme1390I CCNGG 4 cut(s) 349, 540, 552, 693
Bme18I GGWCC 4 cut(s) 42, 147, 542, 689
BmgBI CACGTC 1 cut(s) 171
BmgT120I GGNCC 4 cut(s) 42, 147, 542, 689
BmiI GGNNCC 2 cut(s) 43, 353
BmrFI CCNGG 4 cut(s) 349, 540, 552, 693
BmsI GCATC 2 cut(s) 388, 662
BplI GAGNNNNNCTC 2 cut(s) 626, 658
BpmI CTGGAG 2 cut(s) 428, 573
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 402
BsaAI YACGTR 1 cut(s) 442
BsaI GGTCTC 2 cut(s) 119, 646
BsaJI CCNNGG 3 cut(s) 55, 255, 347
BsaXI ACNNNNNCTCC 2 cut(s) 687, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse118I RCCGGY 2 cut(s) 116, 149
Bse1I ACTGG 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 4 cut(s) 349, 540, 552, 693
BseDI CCNNGG 3 cut(s) 55, 255, 347
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 95, 285, 393
BseNI ACTGG 1 cut(s) 545
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 209, 304
Bsh1236I CGCG 2 cut(s) 57, 276
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 617
BshNI GGYRCC 1 cut(s) 351
BsiEI CGRYCG 1 cut(s) 157
BsiSI CCGG 2 cut(s) 117, 150
BslFI GGGAC 2 cut(s) 329, 430
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 2 cut(s) 119, 646
BsmFI GGGAC 2 cut(s) 329, 430
BsnI GGCC 1 cut(s) 617
Bso31I GGTCTC 2 cut(s) 119, 646
Bsp143I GATC 2 cut(s) 389, 508
Bsp1720I GCTNAGC 1 cut(s) 402
BspANI GGCC 1 cut(s) 617
BspCNI CTCAG 3 cut(s) 96, 286, 394
BspFNI CGCG 2 cut(s) 57, 276
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 43, 353
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 1 cut(s) 351
BspTNI GGTCTC 2 cut(s) 119, 646
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 116, 149
BsrI ACTGG 1 cut(s) 545
BssAI RCCGGY 2 cut(s) 116, 149
BssECI CCNNGG 3 cut(s) 55, 255, 347
BssMI GATC 2 cut(s) 389, 508
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 4 cut(s) 349, 540, 552, 693
Bst4CI ACNGT 4 cut(s) 158, 233, 487, 497
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 4 cut(s) 118, 356, 559, 677
BstDEI CTNAG 4 cut(s) 104, 294, 402, 645
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 2 cut(s) 57, 276
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 2 cut(s) 392, 511
BstMAI GTCTC 2 cut(s) 119, 646
BstMBI GATC 2 cut(s) 389, 508
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 208
BstNI CCWGG 4 cut(s) 349, 540, 552, 693
BstSCI CCNGG 4 cut(s) 347, 538, 550, 691
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 2 cut(s) 57, 276
BstV1I GCAGC 2 cut(s) 209, 304
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 617
BtgI CCRYGG 1 cut(s) 55
BtrI CACGTC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 391
Cac8I GCNNGC 4 cut(s) 118, 356, 559, 677
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 276
Cfr10I RCCGGY 2 cut(s) 116, 149
Cfr13I GGNCC 4 cut(s) 42, 147, 542, 689
Cfr42I CCGCGG 1 cut(s) 58
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 498
CviAII CATG 4 cut(s) 197, 335, 449, 732
CviJI RGCY 7 cut(s) 72, 222, 406, 557, 617, 649, 679
CviKI_1 RGCY 7 cut(s) 72, 222, 406, 557, 617, 649, 679
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 4 cut(s) 104, 294, 402, 645
DpnI GATC 2 cut(s) 391, 510
DpnII GATC 2 cut(s) 389, 508
DrdI GACNNNNNNGTC 1 cut(s) 487
DseDI GACNNNNNNGTC 1 cut(s) 487
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 2 cut(s) 119, 646
Eco47I GGWCC 4 cut(s) 42, 147, 542, 689
EcoO109I RGGNCCY 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 4 cut(s) 347, 538, 550, 691
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 200, 338, 452, 735
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 2 cut(s) 329, 430
FatI CATG 4 cut(s) 196, 334, 448, 731
FauI CCCGC 1 cut(s) 62
FauNDI CATATG 1 cut(s) 718
FblI GTMKAC 2 cut(s) 17, 324
Fnu4HI GCNGC 5 cut(s) 5, 100, 223, 226, 318
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 5 cut(s) 5, 100, 223, 226, 318
GlaI GCGC 1 cut(s) 275
GluI GCNGC 5 cut(s) 5, 100, 223, 226, 318
GsuI CTGGAG 2 cut(s) 428, 573
HaeIII GGCC 1 cut(s) 617
HapII CCGG 2 cut(s) 117, 150
HgaI GACGC 1 cut(s) 265
HhaI GCGC 1 cut(s) 276
Hin1II CATG 4 cut(s) 200, 338, 452, 735
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 1 cut(s) 94
HpaII CCGG 2 cut(s) 117, 150
HphI GGTGA 2 cut(s) 245, 588
Hpy166II GTNNAC 3 cut(s) 18, 262, 325
Hpy188I TCNGA 2 cut(s) 141, 364
Hpy188III TCNNGA 4 cut(s) 174, 197, 293, 707
Hpy8I GTNNAC 3 cut(s) 18, 262, 325
Hpy99I CGWCG 2 cut(s) 136, 233
HpyAV CCTTC 2 cut(s) 25, 233
HpyCH4III ACNGT 4 cut(s) 158, 233, 487, 497
HpyCH4IV ACGT 2 cut(s) 170, 441
HpyCH4V TGCA 2 cut(s) 561, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 208
HpyF3I CTNAG 4 cut(s) 104, 294, 402, 645
HpySE526I ACGT 2 cut(s) 170, 441
Hsp92II CATG 4 cut(s) 200, 338, 452, 735
HspAI GCGC 1 cut(s) 274
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
KspI CCGCGG 1 cut(s) 58
Kzo9I GATC 2 cut(s) 389, 508
LmnI GCTCC 2 cut(s) 77, 554
Lsp1109I GCAGC 2 cut(s) 209, 304
LweI GCATC 2 cut(s) 388, 662
MaeII ACGT 2 cut(s) 170, 441
MaeIII GTNAC 3 cut(s) 171, 437, 594
MalI GATC 2 cut(s) 391, 510
MboI GATC 2 cut(s) 389, 508
MboII GAAGA 2 cut(s) 248, 619
MluCI AATT 3 cut(s) 369, 455, 530
MnlI CCTC 5 cut(s) 37, 201, 259, 628, 628
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 2 cut(s) 477, 585
MspA1I CMGCKG 3 cut(s) 57, 358, 679
MspI CCGG 2 cut(s) 117, 150
MspR9I CCNGG 4 cut(s) 349, 540, 552, 693
MvaI CCWGG 4 cut(s) 349, 540, 552, 693
MvnI CGCG 2 cut(s) 57, 276
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 208
NaeI GCCGGC 1 cut(s) 118
NdeI CATATG 1 cut(s) 718
NdeII GATC 2 cut(s) 389, 508
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 4 cut(s) 200, 338, 452, 735
NlaIV GGNNCC 2 cut(s) 43, 353
NmuCI GTSAC 2 cut(s) 171, 594
PagI TCATGA 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 94
PflFI GACNNNGTC 2 cut(s) 130, 158
PflMI CCANNNNNTGG 1 cut(s) 551
PfoI TCCNGGA 2 cut(s) 538, 550
PkrI GCNGC 5 cut(s) 6, 101, 224, 227, 319
Ppu21I YACGTR 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 4 cut(s) 347, 538, 550, 691
PspGI CCWGG 4 cut(s) 347, 538, 550, 691
PspN4I GGNNCC 2 cut(s) 43, 353
PspPI GGNCC 4 cut(s) 42, 147, 542, 689
PspPPI RGGWCCY 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 551
PsyI GACNNNGTC 2 cut(s) 130, 158
PvuII CAGCTG 1 cut(s) 679
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
SacII CCGCGG 1 cut(s) 58
SalI GTCGAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 477, 585
SatI GCNGC 5 cut(s) 5, 100, 223, 226, 318
Sau3AI GATC 2 cut(s) 389, 508
Sau96I GGNCC 4 cut(s) 42, 147, 542, 689
ScrFI CCNGG 4 cut(s) 349, 540, 552, 693
SfaNI GCATC 2 cut(s) 388, 662
SfcI CTRYAG 1 cut(s) 321
Sfr303I CCGCGG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 58
SinI GGWCC 4 cut(s) 42, 147, 542, 689
Sse9I AATT 3 cut(s) 369, 455, 530
StyD4I CCNGG 4 cut(s) 347, 538, 550, 691
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 4 cut(s) 158, 233, 487, 497
TaiI ACGT 2 cut(s) 173, 444
TaqI TCGA 5 cut(s) 17, 29, 306, 507, 700
TaqII GACCGA 1 cut(s) 684
TasI AATT 3 cut(s) 369, 455, 530
TauI GCSGC 3 cut(s) 7, 102, 228
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 477, 585
Tru9I TTAA 2 cut(s) 477, 585
TseFI GTSAC 2 cut(s) 171, 594
TseI GCWGC 2 cut(s) 222, 317
Tsp45I GTSAC 2 cut(s) 171, 594
TspDTI ATGAA 2 cut(s) 185, 648
Tth111I GACNNNGTC 2 cut(s) 130, 158
Van91I CCANNNNNTGG 1 cut(s) 551
VpaK11BI GGWCC 4 cut(s) 42, 147, 542, 689
XapI RAATTY 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XmiI GTMKAC 2 cut(s) 17, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.