AT4G18290

Potassium channel

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
10114794 .. 10118652
3859 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18290.1

Sequence Viewer

Length: 2094 bp
ATGTCAATCTCTTGTACCAGAAACTTCTTCAAACGATTCTGCGTCGAAGAATACAATATGGATACATTCAAACATAGCAGTTTCCTCTCTGCTGATCTCTTACCATCTCTTGGAGCTAGAATAAACCAATCAACTAAGCTCCGTAAACACATCATCTCTCCTTTCGATCCACGTTTCAGGGGATGGGAGATGTGGCTGGTCATTCTTGTGATTTACTCAGCTTGGATTTGTCCATTTGAGTTTGCCTTCATCACCTACAAGAAAGACGCACTTTTCATCATTGACAACATTGTCAATGGATTCTTTGCCATTGACATCATTCTCACCTTCTTCGTTGCTTATCTAGACAGCCACTCATATCTTCTAGTCGACAAACCTAAGAAAATAGCTATAAGGTACCTTTCTACTTGGTTCGCCTTTGATGTCTGCTCAACAGCTCCATTCCAGTCACTGAGTCTTCTGTTCAAATACAATGGAAGTGAAATAGGATTCAGAGTTCTTAGTATGCTCAGGCTCTGGCGTCTTAGACGAGTTAGCTCGCTGTTTGCAAGGCTTGAGAAAGATATCCGCTTCAACTATTTCTGGACACGATGCACAAAACTCATTTCGGTGACACTGTTTGCAGTACATTGTGCTGGATGCTTCGCCTACCTCATTGCAGATCAATATCATGATCCAACAAAAACATGGATTGGAGCTGTCTACCCAAATTTCAAGGAGACAAGCGTATGGAGTAGATATGTTACTGCTCTTTACTGGTCTATTACGACATTAACAACAACAGGTTATGGAGACTTACATGCTGAGAACCCAAGAGAAATGTTGTTCTTTGTGTTTTTCATGCTCTTCAACCTCGGTTTCACATCTTACCTCATAGGAAATATGACCAACCTTGTGGTTCACTGGACTAGCCGCACCAGAAACTTTAGAGATACTGTAAGAGCTGCTTCAGAGTTTGCATCAAGAAACCAACTCCCACCAAACATACAAGACCAAATGTTATCACACATTTGCTTAAAGTTTAAAACAGAGGGTCTGAAACAACAAGAAGCTTTAAATGGTTTGCCGAAAGCAATCCGGTCAAGCATTGCAAACTATCTCTTCTTCCCAATCGTTCAGAACGTCTACCTATTTCACGGAGTTTCTCGCAACTTCCTATTTCAGTTGGTTTCAGATATAGACGCCGAATATTTCCCACCAAGAGAAGATGTAATACTACAGAACGAAGCTCCTACTGACCTCTACATCCTAGTCTCAGGGGCAGTGGATTTTACTGTCTACGTTGGCGAAGAAGATCAGGTTCAAGGCAAGGCGGTTGTTGGCGATGCATTTGGAGAGATTGGTGTGTTATGCTATACACCACAACCTTTCACAGTTAGGACAACAGAACTATCTCAGATACTACGGATAAGCAAAAAATCTCTAATGAGTGCTATGCGAGCTCATGTCGAAGATGGACGAGTCATAATGAACAACCTCTTCATGAAACTTAGAGGGCAACAATCAATAGCAATTGATGATCCAAATTCAGAACCAGAGTCACTTCTCAAGGAGTGGCTTGTTGGTGGTTCAAAGACAGGAGAAGGAAACGCTAGTGATCAAGGACATGGGCACAAATATTTACAACTGCATGATTCAGAAAATATTGATATGGGGTCAACTGAATGGAGAGATTCAAGAAGATCTGGTTATGGCGAAACGAAAAGAGTTCGAGAACATACGATAGAGATAGAAGAAGGAGAAAAACCAAATAAAGAGTTTGATGGAAAAGGTTGCTCTGATGCAGATCTTACCTCATTTGAATTTCATTCACAGGAAGCATATCCATATTGCAGATCAAACATCCAAATCAAACAACATGAAGCTGCAAAACCAAAAGATAAAAGAGTTACCATCCACTTGAAGTCCCGGGACAAAGATTTGTCGAAGCTGATAATCCTTCCTGCTTCCATAGAAGAGTTGCTAAGACTTGCAGGTGAAAAATTTGGATACAGCTTCACAAAGGTCACGAATGCGGAAAACGCAGAAATAGATGATGAAGATGTGATTAGAGATGGTGATCATTTGTATATTCTCATCAATGAAAACTCTTAA

Protein Analysis

697

Amino Acids

80.15

Weight (kDa)

6.44

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 61 - 306 6.7e-42 Ion transport protein
Ion_trans_2 PF07885 232 - 299 1.2e-11 Ion channel
cNMP_binding PF00027 397 - 481 7.3e-12 Cyclic nucleotide-binding domain
KHA PF11834 628 - 691 7.3e-23 KHA, dimerisation domain of potassium ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1964
AasI GACNNNNNNGTC 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 1964
Acc65I GGTACC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 110
AccI GTMKAC 4 cut(s) 369, 702, 1125, 1278
AciI CCGC 4 cut(s) 568, 913, 1313, 2015
AclWI GGATC 3 cut(s) 161, 668, 1514
AcsI RAATTY 4 cut(s) 709, 1525, 1802, 1982
AcuI CTGAAG 1 cut(s) 933
AcyI GRCGYC 2 cut(s) 520, 1182
AfaI GTAC 3 cut(s) 16, 398, 627
AfiI CCNNNNNNNGG 1 cut(s) 110
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
Alw21I GWGCWC 1 cut(s) 1444
Alw26I GTCTC 3 cut(s) 713, 786, 1258
AlwI GGATC 3 cut(s) 161, 668, 1514
AlwNI CAGNNNCTG 2 cut(s) 451, 516
Ama87I CYCGRG 1 cut(s) 1908
ApeKI GCWGC 2 cut(s) 944, 1865
ApoI RAATTY 4 cut(s) 709, 1525, 1802, 1982
Asp718I GGTACC 1 cut(s) 396
AsuC2I CCSGG 2 cut(s) 1909, 1910
AsuHPI GGTGA 5 cut(s) 244, 316, 622, 1988, 2069
AvaI CYCGRG 1 cut(s) 1908
BaeGI GKGCMC 1 cut(s) 1614
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 1444
BarI GAAGNNNNNNTAC 2 cut(s) 1197, 1229
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 1444
BbvI GCAGC 2 cut(s) 931, 1852
BccI CCATC 6 cut(s) 112, 177, 1448, 1757, 1901, 2048
BciVI GTATCC 2 cut(s) 55, 1982
BclI TGATCA 2 cut(s) 1597, 2059
BcnI CCSGG 2 cut(s) 1909, 1910
BcoDI GTCTC 3 cut(s) 713, 786, 1258
BfaI CTAG 6 cut(s) 117, 344, 365, 909, 1250, 1593
BfmI CTRYAG 1 cut(s) 1217
BfuAI ACCTGC 1 cut(s) 1964
BfuI GTATCC 2 cut(s) 55, 1982
BglII AGATCT 2 cut(s) 1682, 1786
BisI GCNGC 3 cut(s) 913, 945, 1866
BlsI GCNGC 3 cut(s) 914, 946, 1867
Bme1390I CCNGG 2 cut(s) 1909, 1910
BmeT110I CYCGRG 1 cut(s) 1908
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 2 cut(s) 1909, 1910
BmsI GCATC 5 cut(s) 581, 629, 968, 1315, 1771
BpiI GAAGAC 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 509
BpuEI CTTGAG 2 cut(s) 575, 1532
BpuMI CCSGG 2 cut(s) 1909, 1910
BsaBI GATNNNNATC 3 cut(s) 666, 1785, 2058
BsaHI GRCGYC 2 cut(s) 520, 1182
BsaJI CCNNGG 2 cut(s) 853, 1908
BsaWI WCCGGW 1 cut(s) 1077
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 3 cut(s) 445, 761, 908
Bse3DI GCAATG 2 cut(s) 654, 1086
Bse8I GATNNNNATC 3 cut(s) 666, 1785, 2058
BseDI CCNNGG 2 cut(s) 853, 1908
BseGI GGATG 5 cut(s) 188, 644, 1245, 1842, 1893
BseJI GATNNNNATC 3 cut(s) 666, 1785, 2058
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 2 cut(s) 654, 1086
BseMII CTCAG 6 cut(s) 231, 443, 523, 795, 1269, 1409
BseNI ACTGG 3 cut(s) 445, 761, 908
BseSI GKGCMC 1 cut(s) 1614
BseXI GCAGC 2 cut(s) 931, 1852
BshNI GGYRCC 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 1444
BsiHKCI CYCGRG 1 cut(s) 1908
BsiSI CCGG 2 cut(s) 1078, 1909
BslFI GGGAC 2 cut(s) 1891, 1925
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 3 cut(s) 713, 786, 1258
BsmFI GGGAC 2 cut(s) 1891, 1925
BsmI GAATGC 1 cut(s) 2017
BsoBI CYCGRG 1 cut(s) 1908
Bsp1286I GDGCHC 2 cut(s) 1444, 1614
BspACI CCGC 4 cut(s) 568, 913, 1313, 2015
BspCNI CTCAG 6 cut(s) 230, 444, 522, 796, 1268, 1408
BspHI TCATGA 2 cut(s) 670, 1482
BspLI GGNNCC 1 cut(s) 398
BspMI ACCTGC 1 cut(s) 1964
BspPI GGATC 3 cut(s) 161, 668, 1514
BspQI GCTCTTC 1 cut(s) 851
BspT107I GGYRCC 1 cut(s) 396
BsrDI GCAATG 2 cut(s) 654, 1086
BsrI ACTGG 3 cut(s) 445, 761, 908
BssECI CCNNGG 2 cut(s) 853, 1908
BssNI GRCGYC 2 cut(s) 520, 1182
Bst4CI ACNGT 4 cut(s) 618, 937, 1276, 1375
Bst6I CTCTTC 4 cut(s) 851, 1106, 1484, 1950
BstACI GRCGYC 2 cut(s) 520, 1182
BstC8I GCNNGC 2 cut(s) 539, 1440
BstF5I GGATG 5 cut(s) 188, 644, 1245, 1842, 1893
BstMAI GTCTC 3 cut(s) 713, 786, 1258
BstMWI GCNNNNNNNGC 2 cut(s) 1439, 2021
BstNSI RCATGY 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 1907, 1908
BstSFI CTRYAG 1 cut(s) 1217
BstSLI GKGCMC 1 cut(s) 1614
BstV1I GCAGC 2 cut(s) 931, 1852
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 2 cut(s) 1682, 1786
BstXI CCANNNNNNTGG 1 cut(s) 895
BstYI RGATCY 2 cut(s) 1682, 1786
BsuI GTATCC 2 cut(s) 55, 1982
BtgZI GCGATG 1 cut(s) 1338
BtsCI GGATG 5 cut(s) 188, 644, 1245, 1842, 1893
BtsI GCAGTG 1 cut(s) 1269
BtsIMutI CAGTG 4 cut(s) 449, 614, 901, 1269
BveI ACCTGC 1 cut(s) 1964
Cac8I GCNNGC 2 cut(s) 539, 1440
CaiI CAGNNNCTG 2 cut(s) 451, 516
CciI TCATGA 2 cut(s) 670, 1482
Cfr9I CCCGGG 1 cut(s) 1908
CseI GACGC 4 cut(s) 31, 275, 509, 1190
Csp6I GTAC 3 cut(s) 15, 397, 626
CviAII CATG 9 cut(s) 671, 687, 800, 841, 1445, 1483, 1607, 1631, 1859
CviQI GTAC 3 cut(s) 15, 397, 626
DraI TTTAAA 2 cut(s) 1024, 1056
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
Eam1104I CTCTTC 4 cut(s) 851, 1106, 1484, 1950
EarI CTCTTC 4 cut(s) 851, 1106, 1484, 1950
Ecl136II GAGCTC 1 cut(s) 1442
Eco24I GRGCYC 1 cut(s) 1444
Eco32I GATATC 1 cut(s) 565
Eco53kI GAGCTC 1 cut(s) 1442
Eco57I CTGAAG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 1908
EcoICRI GAGCTC 1 cut(s) 1442
EcoRV GATATC 1 cut(s) 565
EcoT22I ATGCAT 1 cut(s) 1330
EcoT38I GRGCYC 1 cut(s) 1444
FaeI CATG 9 cut(s) 674, 690, 803, 844, 1448, 1486, 1610, 1634, 1862
FalI AAGNNNNNCTT 4 cut(s) 255, 287, 931, 963
FaqI GGGAC 2 cut(s) 1891, 1925
FatI CATG 9 cut(s) 670, 686, 799, 840, 1444, 1482, 1606, 1630, 1858
FbaI TGATCA 2 cut(s) 1597, 2059
FblI GTMKAC 4 cut(s) 369, 702, 1125, 1278
Fnu4HI GCNGC 3 cut(s) 913, 945, 1866
FokI GGATG 5 cut(s) 195, 651, 1232, 1829, 1880
FriOI GRGCYC 1 cut(s) 1444
Fsp4HI GCNGC 3 cut(s) 913, 945, 1866
FspBI CTAG 6 cut(s) 117, 344, 365, 909, 1250, 1593
GluI GCNGC 3 cut(s) 913, 945, 1866
HapII CCGG 2 cut(s) 1078, 1909
HgaI GACGC 4 cut(s) 31, 275, 509, 1190
Hin1I GRCGYC 2 cut(s) 520, 1182
Hin1II CATG 9 cut(s) 674, 690, 803, 844, 1448, 1486, 1610, 1634, 1862
HincII GTYRAC 2 cut(s) 370, 1659
HindII GTYRAC 2 cut(s) 370, 1659
HindIII AAGCTT 1 cut(s) 1050
HinfI GANTC 8 cut(s) 36, 300, 454, 489, 1461, 1538, 1634, 1673
HpaII CCGG 2 cut(s) 1078, 1909
HphI GGTGA 5 cut(s) 244, 316, 622, 1988, 2069
Hpy166II GTNNAC 7 cut(s) 146, 370, 703, 901, 1126, 1279, 1659
Hpy188I TCNGA 9 cut(s) 494, 952, 1038, 1119, 1174, 1398, 1531, 1639, 1780
Hpy188III TCNNGA 8 cut(s) 344, 583, 671, 963, 1483, 1677, 1712, 2008
Hpy8I GTNNAC 7 cut(s) 146, 370, 703, 901, 1126, 1279, 1659
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 5 cut(s) 256, 337, 1577, 1730, 1949
HpyCH4III ACNGT 4 cut(s) 618, 937, 1276, 1375
HpyCH4IV ACGT 3 cut(s) 172, 1122, 1281
HpyF10VI GCNNNNNNNGC 2 cut(s) 1439, 2021
HpySE526I ACGT 3 cut(s) 172, 1122, 1281
Hsp92I GRCGYC 2 cut(s) 520, 1182
Hsp92II CATG 9 cut(s) 674, 690, 803, 844, 1448, 1486, 1610, 1634, 1862
KpnI GGTACC 1 cut(s) 400
Ksp22I TGATCA 2 cut(s) 1597, 2059
LguI GCTCTTC 1 cut(s) 851
LmnI GCTCC 5 cut(s) 113, 144, 442, 695, 1234
Lsp1109I GCAGC 2 cut(s) 931, 1852
LweI GCATC 5 cut(s) 581, 629, 968, 1315, 1771
MaeI CTAG 6 cut(s) 117, 344, 365, 909, 1250, 1593
MaeII ACGT 3 cut(s) 172, 1122, 1281
MaeIII GTNAC 6 cut(s) 447, 610, 742, 1539, 1888, 2005
MfeI CAATTG 1 cut(s) 1512
MflI RGATCY 2 cut(s) 1682, 1786
MhlI GDGCHC 2 cut(s) 1444, 1614
MluCI AATT 5 cut(s) 709, 1512, 1525, 1802, 1982
MlyI GAGTC 3 cut(s) 463, 1470, 1547
MmeI TCCRAC 1 cut(s) 701
MnlI CCTC 9 cut(s) 95, 662, 863, 881, 1024, 1250, 1487, 1487, 1804
Mph1103I ATGCAT 1 cut(s) 1330
MseI TTAA 5 cut(s) 773, 1016, 1023, 1055, 2092
MslI CAYNNNNRTG 2 cut(s) 206, 608
MspI CCGG 2 cut(s) 1078, 1909
MspR9I CCNGG 2 cut(s) 1909, 1910
MunI CAATTG 1 cut(s) 1512
Mva1269I GAATGC 1 cut(s) 2017
MwoI GCNNNNNNNGC 2 cut(s) 1439, 2021
NciI CCSGG 2 cut(s) 1909, 1910
NlaIII CATG 9 cut(s) 674, 690, 803, 844, 1448, 1486, 1610, 1634, 1862
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 4 cut(s) 447, 610, 1539, 2005
NsiI ATGCAT 1 cut(s) 1330
NspI RCATGY 1 cut(s) 803
PagI TCATGA 2 cut(s) 670, 1482
PaqCI CACCTGC 1 cut(s) 1964
PciSI GCTCTTC 1 cut(s) 851
PcsI WCGNNNNNNNCGW 1 cut(s) 1119
PctI GAATGC 1 cut(s) 2017
PfeI GAWTC 5 cut(s) 36, 300, 489, 1634, 1673
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 3 cut(s) 914, 946, 1867
PleI GAGTC 3 cut(s) 462, 1469, 1546
PpsI GAGTC 3 cut(s) 462, 1469, 1546
Psp124BI GAGCTC 1 cut(s) 1444
PspN4I GGNNCC 1 cut(s) 398
PstNI CAGNNNCTG 2 cut(s) 451, 516
PsuI RGATCY 2 cut(s) 1682, 1786
RsaI GTAC 3 cut(s) 16, 398, 627
RsaNI GTAC 3 cut(s) 15, 397, 626
RseI CAYNNNNRTG 2 cut(s) 206, 608
SacI GAGCTC 1 cut(s) 1444
SalI GTCGAC 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 851
SaqAI TTAA 5 cut(s) 773, 1016, 1023, 1055, 2092
SatI GCNGC 3 cut(s) 913, 945, 1866
SchI GAGTC 3 cut(s) 463, 1470, 1547
ScrFI CCNGG 2 cut(s) 1909, 1910
SduI GDGCHC 2 cut(s) 1444, 1614
SfaNI GCATC 5 cut(s) 581, 629, 968, 1315, 1771
SfcI CTRYAG 1 cut(s) 1217
SmaI CCCGGG 1 cut(s) 1910
SmiMI CAYNNNNRTG 2 cut(s) 206, 608
SmlI CTYRAG 2 cut(s) 554, 1547
SmoI CTYRAG 2 cut(s) 554, 1547
Sse9I AATT 5 cut(s) 709, 1512, 1525, 1802, 1982
SsiI CCGC 4 cut(s) 568, 913, 1313, 2015
SspI AATATT 3 cut(s) 1190, 1619, 1645
SspMI CTAG 6 cut(s) 117, 344, 365, 909, 1250, 1593
SstI GAGCTC 1 cut(s) 1444
StyD4I CCNGG 2 cut(s) 1907, 1908
TaaI ACNGT 4 cut(s) 618, 937, 1276, 1375
TaiI ACGT 3 cut(s) 175, 1125, 1284
TaqI TCGA 6 cut(s) 45, 165, 369, 1449, 1711, 1925
TasI AATT 5 cut(s) 709, 1512, 1525, 1802, 1982
TatI WGTACW 1 cut(s) 625
TauI GCSGC 1 cut(s) 915
TfiI GAWTC 5 cut(s) 36, 300, 489, 1634, 1673
Tru1I TTAA 5 cut(s) 773, 1016, 1023, 1055, 2092
Tru9I TTAA 5 cut(s) 773, 1016, 1023, 1055, 2092
TscAI CASTG 4 cut(s) 456, 621, 908, 1269
TseFI GTSAC 4 cut(s) 447, 610, 1539, 2005
TseI GCWGC 2 cut(s) 944, 1865
Tsp45I GTSAC 4 cut(s) 447, 610, 1539, 2005
TspDTI ATGAA 9 cut(s) 238, 265, 829, 1471, 1484, 1499, 1796, 1875, 2052
TspGWI ACGGA 3 cut(s) 131, 1152, 1420
TspMI CCCGGG 1 cut(s) 1908
TspRI CASTG 4 cut(s) 456, 621, 908, 1269
Van91I CCANNNNNTGG 1 cut(s) 110
XapI RAATTY 4 cut(s) 709, 1525, 1802, 1982
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 1 cut(s) 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 684
XmaI CCCGGG 1 cut(s) 1908
XmiI GTMKAC 4 cut(s) 369, 702, 1125, 1278
XspI CTAG 6 cut(s) 117, 344, 365, 909, 1250, 1593
Zsp2I ATGCAT 1 cut(s) 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.