Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474133.1

Orthogroup ID

OG0008964

Physical Location & Seq

Genomic Coordinates Forward (+)

87 .. 1458

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474133.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgtcagtttccggcacaaagaatttcttcaggaggttttgtattgatgaataccaaatagatagtgttgctcagagcagcttcttctctagtgatctattgccatctcttggagccagaatcaaccaatcaaccaagctccgaaaatacattatatcgccttacaatcctcgttatagggcttgggagatgttactcattgttctcgtcatttactccgcctggatttgcccattcgagtttgcattcttgacttacaagcaagatgctctttttgtcatcgacaacattgtcaacggtttctttgccattgacatcttcctcactttctttgttgcatatctcgacagccagtcttatcttcttgttgacaatcccaagcaaattgcaatgaggtacatatcaacctggtttattttcgatgtgtgttccactgccccattccagcctattattagcctcttgtttacaaatcatggcagcaaacttggctttaaggtactgaacatgctccggctctggcgcctcagacgagtgagctccctgtttgcaagacttgagaaggacattcgattcaattacttctggactcggtgcacaaagctcatttctgtgacccttttcgcagtacattgtgctggttgcttttactatctcatagcagacagataccccgattcaaaacaaacatggatcggtgcagtgtacccaaatttcaaagaggatagtctttggaacagatatgtcactgcaatgtactggtctatcacaacactcacaaccactggctatggagacttgcatgctgagaacccaagggagatgctgttcgatattttctacatgctgttcaacttgggattgacagcttacctcatcggaaacatgacaaaccttgtggttcattcgaccagcagaaccagaatctttgtaagtacttggttcttctatagctcaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0007623 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010118 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048511 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ion_trans KHA cNMP_binding

Protein Analysis

320

Amino Acids

37.6

Weight (kDa)

9.12

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18290 AT4G18290 AT5G46240
fragaria_vesca	FvH4_3g05650 FvH4_3g05650
malus_domestica	MD05G1284400.v1.1 MD10G1262800.v1.1
prunus_persica	Prupe.4G080000_v2.0.a1 Prupe.4G080000_v2.0.a1
pyrus_communis	pycom05g26360
rosa_chinensis	RchiOBHm_Chr5g0013991
rosa_laevigata	RLG00000032060
rosa_multiflora	Rmu_co8232297.1_g000001 Rmu_co8474133.1_g000001 Rmu_sc0005803.1_g000012
rosa_roxburghii	Rroxscaffold_1G00062720
rosa_rugosa	Rorug05G0013900
rosa_samantha	Rh5AG108400 Rh5BG105200 Rh5CG117000 Rh5DG103900
rosa_wichuraiana	Rw5G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	522
AccB7I	CCANNNNNTGG	1 cut(s)	110
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	22, 712
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	523
AfaI	GTAC	6 cut(s)	398, 501, 630, 707, 758, 937
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	4 cut(s)	577, 681, 718, 853
AhdI	GACNNNNNGTC	1 cut(s)	352
AjnI	CCWGG	2 cut(s)	221, 407
AloI	GAACNNNNNNTCC	2 cut(s)	812, 844
AluBI	AGCT	6 cut(s)	81, 139, 540, 604, 869, 954
AluI	AGCT	6 cut(s)	81, 139, 540, 604, 869, 954
Alw21I	GWGCWC	2 cut(s)	542, 599
Alw26I	GTCTC	1 cut(s)	789
Alw44I	GTGCAC	1 cut(s)	595
AlwI	GGATC	1 cut(s)	701
ApaLI	GTGCAC	1 cut(s)	595
ApeKI	GCWGC	2 cut(s)	78, 480
ApoI	RAATTY	2 cut(s)	22, 712
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	542, 599
BbvI	GCAGC	2 cut(s)	90, 492
BccI	CCATC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	223, 409
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	949
BfoI	RGCGCY	1 cut(s)	526
BisI	GCNGC	2 cut(s)	79, 481
BlsI	GCNGC	2 cut(s)	80, 482
BmcAI	AGTACT	1 cut(s)	937
Bme1390I	CCNGG	2 cut(s)	223, 409
BmeRI	GACNNNNNGTC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	115, 524
BmrFI	CCNGG	2 cut(s)	223, 409
BmsI	GCATC	2 cut(s)	256, 813
BpuEI	CTTGAG	1 cut(s)	578
BsaHI	GRCGYC	1 cut(s)	523
BsaJI	CCNNGG	1 cut(s)	815
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 812, 842
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	352, 764, 790
Bse3DI	GCAATG	2 cut(s)	396, 759
BseBI	CCWGG	2 cut(s)	223, 409
BseDI	CCNNGG	1 cut(s)	815
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	2 cut(s)	396, 759
BseMII	CTCAG	3 cut(s)	86, 541, 798
BseNI	ACTGG	3 cut(s)	352, 764, 790
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	2 cut(s)	90, 492
BsgI	GTGCAG	1 cut(s)	720
BshNI	GGYRCC	1 cut(s)	522
BsiHKAI	GWGCWC	2 cut(s)	542, 599
BsiSI	CCGG	2 cut(s)	12, 514
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	789
BsmI	GAATGC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	542, 599
Bsp143I	GATC	2 cut(s)	94, 693
BspACI	CCGC	1 cut(s)	219
BspCNI	CTCAG	3 cut(s)	85, 540, 799
BspLI	GGNNCC	2 cut(s)	115, 524
BspPI	GGATC	1 cut(s)	701
BspT107I	GGYRCC	1 cut(s)	522
BsrDI	GCAATG	2 cut(s)	396, 759
BsrI	ACTGG	3 cut(s)	352, 764, 790
BssECI	CCNNGG	1 cut(s)	815
BssMI	GATC	2 cut(s)	94, 693
BssNI	GRCGYC	1 cut(s)	523
BssT1I	CCWWGG	1 cut(s)	815
Bst2UI	CCWGG	2 cut(s)	223, 409
Bst4CI	ACNGT	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	804
BstDEI	CTNAG	3 cut(s)	72, 527, 807
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	2 cut(s)	97, 696
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	2 cut(s)	94, 693
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNI	CCWGG	2 cut(s)	223, 409
BstNSI	RCATGY	3 cut(s)	511, 806, 847
BstSCI	CCNGG	2 cut(s)	221, 407
BstSFI	CTRYAG	1 cut(s)	949
BstSLI	GKGCMC	1 cut(s)	599
BstV1I	GCAGC	2 cut(s)	90, 492
BtsI	GCAGTG	3 cut(s)	432, 708, 747
BtsIMutI	CAGTG	4 cut(s)	432, 708, 747, 783
Cac8I	GCNNGC	1 cut(s)	804
CfoI	GCGC	1 cut(s)	525
CsiI	ACCWGGT	1 cut(s)	407
Csp6I	GTAC	6 cut(s)	397, 500, 629, 706, 757, 936
CspCI	CAANNNNNGTGG	2 cut(s)	879, 914
CviAII	CATG	6 cut(s)	476, 508, 690, 803, 844, 886
CviQI	GTAC	6 cut(s)	397, 500, 629, 706, 757, 936
DdeI	CTNAG	3 cut(s)	72, 527, 807
DinI	GGCGCC	1 cut(s)	524
DpnI	GATC	2 cut(s)	96, 695
DpnII	GATC	2 cut(s)	94, 693
DrdI	GACNNNNNNGTC	1 cut(s)	290
DriI	GACNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1105I	GACNNNNNGTC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	815
Eco24I	GRGCYC	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	221, 407
EcoT14I	CCWWGG	1 cut(s)	815
EcoT38I	GRGCYC	1 cut(s)	542
EgeI	GGCGCC	1 cut(s)	524
EheI	GGCGCC	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	815
FaeI	CATG	6 cut(s)	479, 511, 693, 806, 847, 889
FalI	AAGNNNNNCTT	4 cut(s)	11, 43, 255, 287
FatI	CATG	6 cut(s)	475, 507, 689, 802, 843, 885
Fnu4HI	GCNGC	2 cut(s)	79, 481
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	79, 481
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	2 cut(s)	79, 481
HaeII	RGCGCY	1 cut(s)	526
HapII	CCGG	2 cut(s)	12, 514
HhaI	GCGC	1 cut(s)	525
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	6 cut(s)	479, 511, 693, 806, 847, 889
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HincII	GTYRAC	2 cut(s)	295, 370
HindII	GTYRAC	2 cut(s)	295, 370
HinfI	GANTC	5 cut(s)	120, 573, 589, 677, 924
HpaII	CCGG	2 cut(s)	12, 514
Hpy166II	GTNNAC	5 cut(s)	295, 370, 468, 597, 706
Hpy188I	TCNGA	4 cut(s)	75, 143, 530, 881
Hpy188III	TCNNGA	4 cut(s)	31, 250, 344, 586
Hpy8I	GTNNAC	5 cut(s)	295, 370, 468, 597, 706
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	8 cut(s)	245, 338, 389, 551, 597, 701, 752, 802
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	3 cut(s)	72, 527, 807
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	6 cut(s)	479, 511, 693, 806, 847, 889
HspAI	GCGC	1 cut(s)	523
KasI	GGCGCC	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	94, 693
LmnI	GCTCC	4 cut(s)	113, 144, 516, 545
Lsp1109I	GCAGC	2 cut(s)	90, 492
LweI	GCATC	2 cut(s)	256, 813
MabI	ACCWGGT	1 cut(s)	407
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	192, 613, 745
MalI	GATC	2 cut(s)	96, 695
MboI	GATC	2 cut(s)	94, 693
MboII	GAAGA	5 cut(s)	19, 76, 310, 353, 937
MhlI	GDGCHC	2 cut(s)	542, 599
MluCI	AATT	4 cut(s)	22, 384, 577, 712
Mly113I	GGCGCC	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	583
MnlI	CCTC	8 cut(s)	27, 180, 332, 387, 470, 536, 715, 884
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	2 cut(s)	611, 752
MspI	CCGG	2 cut(s)	12, 514
MspR9I	CCNGG	2 cut(s)	223, 409
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	2 cut(s)	223, 409
MwoI	GCNNNNNNNGC	1 cut(s)	489
NarI	GGCGCC	1 cut(s)	523
NdeII	GATC	2 cut(s)	94, 693
NlaIII	CATG	6 cut(s)	479, 511, 693, 806, 847, 889
NlaIV	GGNNCC	2 cut(s)	115, 524
NmuCI	GTSAC	2 cut(s)	613, 745
NspI	RCATGY	3 cut(s)	511, 806, 847
PaeI	GCATGC	1 cut(s)	806
PctI	GAATGC	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	4 cut(s)	120, 573, 677, 924
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	80, 482
PleI	GAGTC	1 cut(s)	583
PluTI	GGCGCC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	583
Psp124BI	GAGCTC	1 cut(s)	542
Psp6I	CCWGG	2 cut(s)	221, 407
PspGI	CCWGG	2 cut(s)	221, 407
PspN4I	GGNNCC	2 cut(s)	115, 524
RsaI	GTAC	6 cut(s)	398, 501, 630, 707, 758, 937
RsaNI	GTAC	6 cut(s)	397, 500, 629, 706, 757, 936
RseI	CAYNNNNRTG	2 cut(s)	611, 752
SacI	GAGCTC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	2 cut(s)	79, 481
Sau3AI	GATC	2 cut(s)	94, 693
ScaI	AGTACT	1 cut(s)	937
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	2 cut(s)	223, 409
SduI	GDGCHC	2 cut(s)	542, 599
SexAI	ACCWGGT	1 cut(s)	407
SfaNI	GCATC	2 cut(s)	256, 813
SfcI	CTRYAG	1 cut(s)	949
SfoI	GGCGCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	2 cut(s)	611, 752
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SphI	GCATGC	1 cut(s)	806
Sse9I	AATT	4 cut(s)	22, 384, 577, 712
SsiI	CCGC	1 cut(s)	219
SspDI	GGCGCC	1 cut(s)	522
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	542
StyD4I	CCNGG	2 cut(s)	221, 407
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	7 cut(s)	237, 282, 345, 420, 571, 831, 908
TasI	AATT	4 cut(s)	22, 384, 577, 712
TatI	WGTACW	3 cut(s)	628, 756, 935
TfiI	GAWTC	4 cut(s)	120, 573, 677, 924
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	4 cut(s)	439, 708, 754, 790
TseFI	GTSAC	2 cut(s)	613, 745
TseI	GCWGC	2 cut(s)	78, 480
Tsp45I	GTSAC	2 cut(s)	613, 745
TspDTI	ATGAA	2 cut(s)	63, 893
TspRI	CASTG	4 cut(s)	439, 708, 754, 790
Van91I	CCANNNNNTGG	1 cut(s)	110
VneI	GTGCAC	1 cut(s)	595
XapI	RAATTY	2 cut(s)	22, 712
XceI	RCATGY	3 cut(s)	511, 806, 847
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.