Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232297.1

Orthogroup ID

OG0008964

Physical Location & Seq

Genomic Coordinates Forward (+)

70 .. 756

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232297.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgcttgacaattgtcctggaggaggacagagaggaggatgcaaagatagctcacatgaagatgcagcaatgcaggaagcaaggaacaattgctttacagcttcgcaggctaggatgaagagtgaaataggcaaagctcaaatgacaggtgagaatggccaaactgaaattcaagctgcggtttgccagggccatctggaaaaggtaaaaattgtggttgaaggaggagcagatgtcaacaaaccggaagctagaggatggatgccgaaaggtctagcacaacagcaaggagacaaggacatacatgacctcttattaagttatgaaaatagaagagaaatggatgaacatagaatagagttcattgagccagaaacatctggaagcaccagcaattgtgaaggaatttgtaaaacacaggaagaccaccaacatattcattctcacttgagaaaggtagccatgaagacatatcagtgcccgtctagccctgcaagtgacagagaacaaaggatcagatcatacagcaagagagtaactatccacatgcattctaaaagtgaaagtgtgtcggaaaggcagcttgcgaaattaataattctacctaattccatagacgagctgctcagagttgctagtaagctttctttgtttaacctcagaaacatcactttgagacaaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0007623 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010118 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048511 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ion_trans KHA cNMP_binding

Protein Analysis

228

Amino Acids

25.52

Weight (kDa)

7.14

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18290 AT4G18290 AT5G46240
fragaria_vesca	FvH4_3g05650 FvH4_3g05650
malus_domestica	MD05G1284400.v1.1 MD10G1262800.v1.1
prunus_persica	Prupe.4G080000_v2.0.a1 Prupe.4G080000_v2.0.a1
pyrus_communis	pycom05g26360
rosa_chinensis	RchiOBHm_Chr5g0013991
rosa_laevigata	RLG00000032060
rosa_multiflora	Rmu_co8232297.1_g000001 Rmu_co8474133.1_g000001 Rmu_sc0005803.1_g000012
rosa_roxburghii	Rroxscaffold_1G00062720
rosa_rugosa	Rorug05G0013900
rosa_samantha	Rh5AG108400 Rh5BG105200 Rh5CG117000 Rh5DG103900
rosa_wichuraiana	Rw5G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	168, 405
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	173, 221
AjnI	CCWGG	2 cut(s)	16, 186
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	8 cut(s)	51, 101, 137, 176, 251, 583, 622, 643
AluI	AGCT	8 cut(s)	51, 101, 137, 176, 251, 583, 622, 643
Alw26I	GTCTC	2 cut(s)	285, 670
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	2 cut(s)	157, 190
ApeKI	GCWGC	4 cut(s)	65, 176, 580, 622
ApoI	RAATTY	2 cut(s)	168, 405
AseI	ATTAAT	1 cut(s)	593
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	159
BbsI	GAAGAC	2 cut(s)	429, 473
BbvI	GCAGC	4 cut(s)	77, 163, 592, 609
BccI	CCATC	2 cut(s)	201, 252
BciT130I	CCWGG	2 cut(s)	18, 188
BcoDI	GTCTC	2 cut(s)	285, 670
BfaI	CTAG	5 cut(s)	111, 252, 275, 486, 636
BisI	GCNGC	4 cut(s)	66, 177, 581, 623
BlsI	GCNGC	4 cut(s)	67, 178, 582, 624
Bme1390I	CCNGG	2 cut(s)	18, 188
BmgT120I	GGNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	18, 188
BmsI	GCATC	3 cut(s)	29, 52, 252
BoxI	GACNNNNGTC	1 cut(s)	12
BpiI	GAAGAC	2 cut(s)	429, 473
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	18, 188
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	5 cut(s)	44, 120, 263, 267, 349
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	640, 673
BseRI	GAGGAG	3 cut(s)	36, 48, 240
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	4 cut(s)	77, 163, 592, 609
BshFI	GGCC	2 cut(s)	159, 192
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	285, 670
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	159, 192
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	2 cut(s)	513, 518
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	2 cut(s)	159, 192
BspCNI	CTCAG	2 cut(s)	639, 672
BspPI	GGATC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	513, 518
Bst2UI	CCWGG	2 cut(s)	18, 188
Bst6I	CTCTTC	2 cut(s)	113, 328
BstC8I	GCNNGC	2 cut(s)	108, 585
BstDEI	CTNAG	2 cut(s)	626, 659
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstF5I	GGATG	5 cut(s)	44, 120, 263, 267, 349
BstKTI	GATC	2 cut(s)	516, 521
BstMAI	GTCTC	2 cut(s)	285, 670
BstMBI	GATC	2 cut(s)	513, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 107, 486
BstNI	CCWGG	2 cut(s)	18, 188
BstNSI	RCATGY	1 cut(s)	550
BstPAI	GACNNNNGTC	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	16, 186
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	4 cut(s)	77, 163, 592, 609
BstV2I	GAAGAC	2 cut(s)	429, 473
BsuRI	GGCC	2 cut(s)	159, 192
BtsCI	GGATG	5 cut(s)	44, 120, 263, 267, 349
BtsIMutI	CAGTG	1 cut(s)	482
Cac8I	GCNNGC	2 cut(s)	108, 585
Cfr13I	GGNCC	1 cut(s)	190
CviAII	CATG	4 cut(s)	56, 305, 463, 547
DdeI	CTNAG	2 cut(s)	626, 659
DpnI	GATC	2 cut(s)	515, 520
DpnII	GATC	2 cut(s)	513, 518
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	113, 328
EarI	CTCTTC	2 cut(s)	113, 328
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoRII	CCWGG	2 cut(s)	16, 186
EcoT22I	ATGCAT	1 cut(s)	552
FaeI	CATG	4 cut(s)	59, 308, 466, 550
FatI	CATG	4 cut(s)	55, 304, 462, 546
Fnu4HI	GCNGC	4 cut(s)	66, 177, 581, 623
FokI	GGATG	5 cut(s)	51, 127, 270, 274, 356
Fsp4HI	GCNGC	4 cut(s)	66, 177, 581, 623
FspBI	CTAG	5 cut(s)	111, 252, 275, 486, 636
GluI	GCNGC	4 cut(s)	66, 177, 581, 623
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	159, 192
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	4 cut(s)	59, 308, 466, 550
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	641
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	518, 574, 629, 662
Hpy188III	TCNNGA	2 cut(s)	197, 381
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	215, 395
HpyCH4V	TGCA	5 cut(s)	42, 65, 73, 494, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 107, 486
HpyF3I	CTNAG	2 cut(s)	626, 659
Hsp92II	CATG	4 cut(s)	59, 308, 466, 550
Kzo9I	GATC	2 cut(s)	513, 518
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	4 cut(s)	77, 163, 592, 609
LweI	GCATC	3 cut(s)	29, 52, 252
MaeI	CTAG	5 cut(s)	111, 252, 275, 486, 636
MaeIII	GTNAC	2 cut(s)	497, 535
MalI	GATC	2 cut(s)	515, 520
MboI	GATC	2 cut(s)	513, 518
MboII	GAAGA	5 cut(s)	71, 130, 345, 434, 478
MfeI	CAATTG	3 cut(s)	10, 88, 394
MhlI	GDGCHC	1 cut(s)	482
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	9 cut(s)	10, 88, 168, 210, 394, 405, 590, 597, 607
MluNI	TGGCCA	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	8 cut(s)	14, 17, 26, 29, 218, 248, 320, 668
Mox20I	TGGCCA	1 cut(s)	159
Mph1103I	ATGCAT	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	3 cut(s)	317, 593, 654
MslI	CAYNNNNRTG	2 cut(s)	60, 475
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	18, 188
MunI	CAATTG	3 cut(s)	10, 88, 394
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	2 cut(s)	18, 188
MwoI	GCNNNNNNNGC	3 cut(s)	48, 107, 486
NdeII	GATC	2 cut(s)	513, 518
NlaIII	CATG	4 cut(s)	59, 308, 466, 550
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	1 cut(s)	550
PctI	GAATGC	1 cut(s)	550
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	4 cut(s)	67, 178, 582, 624
PshAI	GACNNNNGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	593
Psp6I	CCWGG	2 cut(s)	16, 186
PspGI	CCWGG	2 cut(s)	16, 186
PspPI	GGNCC	1 cut(s)	190
RseI	CAYNNNNRTG	2 cut(s)	60, 475
SaqAI	TTAA	3 cut(s)	317, 593, 654
SatI	GCNGC	4 cut(s)	66, 177, 581, 623
Sau3AI	GATC	2 cut(s)	513, 518
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	18, 188
SduI	GDGCHC	1 cut(s)	482
SfaNI	GCATC	3 cut(s)	29, 52, 252
SmiMI	CAYNNNNRTG	2 cut(s)	60, 475
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	9 cut(s)	10, 88, 168, 210, 394, 405, 590, 597, 607
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	5 cut(s)	111, 252, 275, 486, 636
StyD4I	CCNGG	2 cut(s)	16, 186
TasI	AATT	9 cut(s)	10, 88, 168, 210, 394, 405, 590, 597, 607
Tru1I	TTAA	3 cut(s)	317, 593, 654
Tru9I	TTAA	3 cut(s)	317, 593, 654
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	4 cut(s)	65, 176, 580, 622
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	7 cut(s)	72, 131, 339, 352, 360, 428, 479
TspRI	CASTG	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	21
XapI	RAATTY	2 cut(s)	168, 405
XceI	RCATGY	1 cut(s)	550
XspI	CTAG	5 cut(s)	111, 252, 275, 486, 636
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.