AT5G46240

Potassium channel

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
18743510 .. 18747406
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46240.1

Sequence Viewer

Length: 2034 bp
ATGTCGATCTCTTGGACTCGAAATTTCTTCGAAAGATTCTGCGTCGAGGAATACAATATAGACACCATAAAACAGAGTAGTTTCCTCTCTGCCGATCTTCTACCATCTCTTGGAGCCAGGATCAACCAATCTACTAAGCTCCGCAAACACATAATCTCTCCTTTTAATCCACGTTACAGAGCGTGGGAGATGTGGCTAGTATTACTAGTTATTTACTCAGCTTGGATTTGCCCATTTCAATTTGCTTTCATCACCTATAAAAAAGACGCGATTTTCATCATCGACAACATTGTTAATGGCTTCTTCGCCATTGATATTATTCTCACCTTCTTCGTCGCTTATCTCGATAGCCACTCCTATCTTCTAGTTGACAGTCCTAAGAAAATAGCAATAAGGTACCTTTCGACGTGGTTCGCTTTCGATGTTTGTTCCACAGCACCATTTCAGCCACTAAGCCTCTTGTTTAACTACAACGGAAGCGAACTAGGATTCAGAATTCTTAGCATGCTCAGGTTATGGCGTCTCCGGCGAGTTAGCTCGCTATTTGCAAGGCTTGAGAAAGATATCCGTTTCAACTATTTCTGGATACGTTGCACAAAACTCATTTCGGTCACTTTGTTCGCTATACATTGTGCTGGATGTTTCAACTACCTGATTGCAGATAGATATCCTAATCCAAGAAAGACATGGATTGGAGCTGTGTATCCAAATTTCAAAGAAGCAAGTCTATGGAATAGATATGTGACTGCTCTTTACTGGTCCATTACGACATTAACGACCACGGGATATGGAGATTTTCATGCTGAGAACCCAAGAGAAATGCTTTTTGACATTTTCTTCATGATGTTCAACCTCGGTTTGACAGCTTACCTCATTGGAAATATGACCAACCTCGTCGTTCATTGGACTAGCCGAACCAGAACCTTTAGGGATTCAGTGAGAGCTGCTTCAGAGTTTGCTTCAAGAAATCAACTCCCACATGACATACAAGATCAAATGTTATCACACATTTGCTTAAAGTTCAAAACAGAGGGCTTGAAACAACAAGAGACCTTGAACAATCTGCCAAAAGCAATCCGGTCAAGCATTGCAAACTATTTATTCTTCCCCATTGTTCACAACATTTACCTCTTTCAAGGAGTTTCTCGTAACTTCCTCTTTCAATTGGTTTCAGATATAGACGCTGAGTATTTCCCACCAAAAGAAGATATAATTCTACAAAACGAAGCTCCTACTGATCTTTACATTCTGGTGTCAGGAGCAGTGGACTTCACTGTCTACGTTGATGGACATGATCAGTTTCAAGGGAAAGCAGTAATTGGAGAAACATTTGGAGAGGTTGGAGTTTTATACTATAGACCACAACCATTCACAGTAAGAACAACCGAGCTATCTCAAATACTGCGGATAAGCAGAACATCGCTGATGAGTGCGATGCATGCTCATGCTGACGATGGACGAGTCATCATGAACAATCTCTTCATGAAACTTAGAGGGCAACAGTCAATAGCAATAGATGATTCGAATACTAGTGGTCACGAAAACAGAGATTTCAAAAGCATGGGATGGGAAGAGTGGAGAGATTCAAGAAAAGATGGCTATGGTTTAGATGTTACGAATCCGACTTCCGACACTGCTCTAATGGATGCGATTCACAAGGAAGATACTGAAATGGTTAAGAAGATACTTAAGGAACAAAAGATAGAGAGAGCCAAAGTGGAAAGATCAAGTAGTGAAACCGCTGGAAGAAGTTACGCTAACGATTCATCGAAAAAAGATCCATATTGCAGCTCAAGCAACCAAATCATCAAGCCATGCAAACGAGAAGAAAAGAGAGTTACCATCCACATGATGTCTGAGAGCAAGAACGGGAAGTTGATACTCTTACCATCATCCATAGAAGAGCTTCTAAGACTTGCAAGTGAGAAGTTTGGAGGCTGCAACTTCACAAAGATCACCAATGCGGACAACGCTGAGATTGATGATTTAGATGTCATTTGGGATGGTGATCATTTGTATTTTTCATCAAATTGA

Protein Analysis

677

Amino Acids

78.27

Weight (kDa)

7.58

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 59 - 306 2.6e-40 Ion transport protein
Ion_trans_2 PF07885 232 - 299 3.5e-12 Ion channel
cNMP_binding PF00027 397 - 481 3.6e-12 Cyclic nucleotide-binding domain
KHA PF11834 611 - 674 4.1e-25 KHA, dimerisation domain of potassium ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1274
Acc65I GGTACC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 110
AccI GTMKAC 1 cut(s) 1278
AccII CGCG 1 cut(s) 269
AciI CCGC 4 cut(s) 142, 1405, 1740, 1964
AclWI GGATC 2 cut(s) 128, 1772
AcsI RAATTY 3 cut(s) 22, 495, 709
AcuI CTGAAG 1 cut(s) 933
AcyI GRCGYC 1 cut(s) 520
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 110
AflII CTTAAG 1 cut(s) 1688
AhlI ACTAGT 2 cut(s) 205, 1529
AjiI CACGTC 1 cut(s) 408
AjnI CCWGG 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 527, 1043
AlwI GGATC 2 cut(s) 128, 1772
ApeKI GCWGC 3 cut(s) 944, 1788, 1938
ApoI RAATTY 3 cut(s) 22, 495, 709
Asp700I GAANNNNTTC 1 cut(s) 1905
Asp718I GGTACC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 759
AsuHPI GGTGA 4 cut(s) 244, 316, 1948, 2018
AsuII TTCGAA 2 cut(s) 30, 1523
AvaII GGWCC 1 cut(s) 759
BanI GGYRCC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 931, 1800, 1925
BccI CCATC 8 cut(s) 112, 1280, 1448, 1560, 1589, 1850, 1897, 1997
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 2 cut(s) 579, 714
BclI TGATCA 2 cut(s) 1294, 2008
BcoDI GTCTC 2 cut(s) 527, 1043
BcuI ACTAGT 2 cut(s) 205, 1529
BfaI CTAG 6 cut(s) 197, 206, 365, 485, 909, 1530
BfmI CTRYAG 1 cut(s) 1354
BfrI CTTAAG 1 cut(s) 1688
BfuI GTATCC 2 cut(s) 579, 714
BisI GCNGC 3 cut(s) 945, 1789, 1939
BlsI GCNGC 3 cut(s) 946, 1790, 1940
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 759
BmgBI CACGTC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 759
BmiI GGNNCC 2 cut(s) 115, 398
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 1425, 1636
Bpu10I CCTNAGC 1 cut(s) 509
Bpu14I TTCGAA 2 cut(s) 30, 1523
BpuEI CTTGAG 2 cut(s) 575, 1777
BsaBI GATNNNNATC 3 cut(s) 275, 666, 2007
BsaHI GRCGYC 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 1043
BsaJI CCNNGG 2 cut(s) 780, 853
BsaWI WCCGGW 1 cut(s) 1077
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 761
Bse3DI GCAATG 1 cut(s) 1086
Bse8I GATNNNNATC 3 cut(s) 275, 666, 2007
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 780, 853
BseGI GGATG 6 cut(s) 644, 1571, 1651, 1842, 1892, 2008
BseJI GATNNNNATC 3 cut(s) 275, 666, 2007
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 1086
BseMII CTCAG 6 cut(s) 231, 523, 795, 1176, 1848, 1965
BseNI ACTGG 1 cut(s) 761
BseXI GCAGC 3 cut(s) 931, 1800, 1925
Bsh1236I CGCG 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 396
BsiSI CCGG 2 cut(s) 526, 1078
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 527, 1043
BsmBI CGTCTC 1 cut(s) 527
Bso31I GGTCTC 1 cut(s) 1043
Bsp119I TTCGAA 2 cut(s) 30, 1523
BspACI CCGC 4 cut(s) 142, 1405, 1740, 1964
BspCNI CTCAG 6 cut(s) 230, 522, 796, 1177, 1849, 1966
BspFNI CGCG 1 cut(s) 269
BspHI TCATGA 3 cut(s) 840, 1467, 1482
BspLI GGNNCC 2 cut(s) 115, 398
BspPI GGATC 2 cut(s) 128, 1772
BspQI GCTCTTC 1 cut(s) 1896
BspT104I TTCGAA 2 cut(s) 30, 1523
BspT107I GGYRCC 1 cut(s) 396
BspTI CTTAAG 1 cut(s) 1688
BspTNI GGTCTC 1 cut(s) 1043
BsrDI GCAATG 1 cut(s) 1086
BsrI ACTGG 1 cut(s) 761
BssECI CCNNGG 2 cut(s) 780, 853
BssNI GRCGYC 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 4 cut(s) 374, 1276, 1375, 1503
Bst6I CTCTTC 3 cut(s) 1484, 1566, 1896
BstACI GRCGYC 1 cut(s) 520
BstAFI CTTAAG 1 cut(s) 1688
BstBI TTCGAA 2 cut(s) 30, 1523
BstC8I GCNNGC 3 cut(s) 506, 539, 1440
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 6 cut(s) 644, 1571, 1651, 1842, 1892, 2008
BstFNI CGCG 1 cut(s) 269
BstMAI GTCTC 2 cut(s) 527, 1043
BstMWI GCNNNNNNNGC 4 cut(s) 526, 1439, 1794, 1970
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 2 cut(s) 508, 1442
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 1354
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 931, 1800, 1925
BstX2I RGATCY 1 cut(s) 1777
BstYI RGATCY 1 cut(s) 1777
BsuI GTATCC 2 cut(s) 579, 714
BtgI CCRYGG 1 cut(s) 780
BtgZI GCGATG 2 cut(s) 1404, 1448
BtrI CACGTC 1 cut(s) 408
BtsCI GGATG 6 cut(s) 644, 1571, 1651, 1842, 1892, 2008
BtsI GCAGTG 2 cut(s) 1269, 1632
BtsIMutI CAGTG 4 cut(s) 942, 1269, 1272, 1632
Cac8I GCNNGC 3 cut(s) 506, 539, 1440
CciI TCATGA 3 cut(s) 840, 1467, 1482
Cfr13I GGNCC 1 cut(s) 759
CseI GACGC 4 cut(s) 31, 275, 509, 1190
Csp6I GTAC 1 cut(s) 397
CviQI GTAC 1 cut(s) 397
DrdI GACNNNNNNGTC 1 cut(s) 1274
DseDI GACNNNNNNGTC 1 cut(s) 1274
Eam1104I CTCTTC 3 cut(s) 1484, 1566, 1896
EarI CTCTTC 3 cut(s) 1484, 1566, 1896
Eco31I GGTCTC 1 cut(s) 1043
Eco32I GATATC 2 cut(s) 565, 668
Eco47I GGWCC 1 cut(s) 759
Eco57I CTGAAG 1 cut(s) 933
EcoRI GAATTC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 2 cut(s) 565, 668
EcoT22I ATGCAT 1 cut(s) 1440
Esp3I CGTCTC 1 cut(s) 527
FbaI TGATCA 2 cut(s) 1294, 2008
FblI GTMKAC 1 cut(s) 1278
Fnu4HI GCNGC 3 cut(s) 945, 1789, 1939
FokI GGATG 6 cut(s) 651, 1578, 1658, 1829, 1879, 2015
Fsp4HI GCNGC 3 cut(s) 945, 1789, 1939
FspBI CTAG 6 cut(s) 197, 206, 365, 485, 909, 1530
GluI GCNGC 3 cut(s) 945, 1789, 1939
HapII CCGG 2 cut(s) 526, 1078
HgaI GACGC 4 cut(s) 31, 275, 509, 1190
Hin1I GRCGYC 1 cut(s) 520
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HpaII CCGG 2 cut(s) 526, 1078
HphI GGTGA 4 cut(s) 244, 316, 1948, 2018
Hpy166II GTNNAC 4 cut(s) 370, 1117, 1267, 1279
Hpy188I TCNGA 6 cut(s) 494, 952, 1174, 1623, 1630, 1858
Hpy188III TCNNGA 9 cut(s) 344, 583, 841, 963, 1257, 1468, 1483, 1538, 1587
Hpy8I GTNNAC 4 cut(s) 370, 1117, 1267, 1279
Hpy99I CGWCG 4 cut(s) 47, 338, 409, 899
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 4 cut(s) 374, 1276, 1375, 1503
HpyCH4IV ACGT 4 cut(s) 172, 407, 589, 1281
HpyCH4V TGCA 9 cut(s) 548, 594, 659, 1091, 1438, 1788, 1818, 1919, 1941
HpyF10VI GCNNNNNNNGC 4 cut(s) 526, 1439, 1794, 1970
HpySE526I ACGT 4 cut(s) 172, 407, 589, 1281
Hsp92I GRCGYC 1 cut(s) 520
KpnI GGTACC 1 cut(s) 400
Ksp22I TGATCA 2 cut(s) 1294, 2008
LguI GCTCTTC 1 cut(s) 1896
LmnI GCTCC 5 cut(s) 113, 144, 695, 1234, 1259
Lsp1109I GCAGC 3 cut(s) 931, 1800, 1925
LweI GCATC 2 cut(s) 1425, 1636
MaeI CTAG 6 cut(s) 197, 206, 365, 485, 909, 1530
MaeII ACGT 4 cut(s) 172, 407, 589, 1281
MaeIII GTNAC 8 cut(s) 173, 610, 742, 1148, 1535, 1612, 1751, 1837
MfeI CAATTG 1 cut(s) 1163
MflI RGATCY 1 cut(s) 1777
MluCI AATT 8 cut(s) 22, 239, 495, 709, 1163, 1212, 1317, 2029
MlyI GAGTC 2 cut(s) 10, 1470
MmeI TCCRAC 3 cut(s) 1321, 1646, 1653
Mph1103I ATGCAT 1 cut(s) 1440
MroXI GAANNNNTTC 1 cut(s) 1905
MseI TTAA 7 cut(s) 165, 294, 465, 773, 1016, 1677, 1689
MslI CAYNNNNRTG 3 cut(s) 1250, 1443, 1847
MspA1I CMGCKG 1 cut(s) 1742
MspCI CTTAAG 1 cut(s) 1688
MspI CCGG 2 cut(s) 526, 1078
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 1163
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 4 cut(s) 526, 1439, 1794, 1970
NlaIV GGNNCC 2 cut(s) 115, 398
NmuCI GTSAC 3 cut(s) 610, 742, 1535
NsiI ATGCAT 1 cut(s) 1440
NspI RCATGY 2 cut(s) 508, 1442
NspV TTCGAA 2 cut(s) 30, 1523
PaeI GCATGC 2 cut(s) 508, 1442
PagI TCATGA 3 cut(s) 840, 1467, 1482
PciSI GCTCTTC 1 cut(s) 1896
PcsI WCGNNNNNNNCGW 2 cut(s) 342, 773
PdmI GAANNNNTTC 1 cut(s) 1905
PfeI GAWTC 8 cut(s) 36, 489, 932, 1520, 1583, 1618, 1651, 1763
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 3 cut(s) 946, 1790, 1940
PleI GAGTC 2 cut(s) 10, 1469
PpsI GAGTC 2 cut(s) 10, 1469
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 115, 398
PspPI GGNCC 1 cut(s) 759
PsuI RGATCY 1 cut(s) 1777
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 3 cut(s) 1250, 1443, 1847
SapI GCTCTTC 1 cut(s) 1896
SaqAI TTAA 7 cut(s) 165, 294, 465, 773, 1016, 1677, 1689
SatI GCNGC 3 cut(s) 945, 1789, 1939
Sau96I GGNCC 1 cut(s) 759
SchI GAGTC 2 cut(s) 10, 1470
ScrFI CCNGG 1 cut(s) 118
SfaNI GCATC 2 cut(s) 1425, 1636
SfcI CTRYAG 1 cut(s) 1354
SfuI TTCGAA 2 cut(s) 30, 1523
SinI GGWCC 1 cut(s) 759
SmiMI CAYNNNNRTG 3 cut(s) 1250, 1443, 1847
SmlI CTYRAG 3 cut(s) 554, 1688, 1792
SmoI CTYRAG 3 cut(s) 554, 1688, 1792
SpeI ACTAGT 2 cut(s) 205, 1529
SphI GCATGC 2 cut(s) 508, 1442
Sse9I AATT 8 cut(s) 22, 239, 495, 709, 1163, 1212, 1317, 2029
SsiI CCGC 4 cut(s) 142, 1405, 1740, 1964
SspMI CTAG 6 cut(s) 197, 206, 365, 485, 909, 1530
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 4 cut(s) 374, 1276, 1375, 1503
TaiI ACGT 4 cut(s) 175, 410, 592, 1284
TaqII GACCGA 1 cut(s) 598
TasI AATT 8 cut(s) 22, 239, 495, 709, 1163, 1212, 1317, 2029
TfiI GAWTC 8 cut(s) 36, 489, 932, 1520, 1583, 1618, 1651, 1763
Tru1I TTAA 7 cut(s) 165, 294, 465, 773, 1016, 1677, 1689
Tru9I TTAA 7 cut(s) 165, 294, 465, 773, 1016, 1677, 1689
TscAI CASTG 4 cut(s) 942, 1269, 1279, 1639
TseFI GTSAC 3 cut(s) 610, 742, 1535
TseI GCWGC 3 cut(s) 944, 1788, 1938
Tsp45I GTSAC 3 cut(s) 610, 742, 1535
TspGWI ACGGA 2 cut(s) 489, 557
TspRI CASTG 4 cut(s) 942, 1269, 1279, 1639
Van91I CCANNNNNTGG 1 cut(s) 110
Vha464I CTTAAG 1 cut(s) 1688
VpaK11BI GGWCC 1 cut(s) 759
XapI RAATTY 3 cut(s) 22, 495, 709
XceI RCATGY 2 cut(s) 508, 1442
XcmI CCANNNNNNNNNTGG 1 cut(s) 684
XmiI GTMKAC 1 cut(s) 1278
XmnI GAANNNNTTC 1 cut(s) 1905
XspI CTAG 6 cut(s) 197, 206, 365, 485, 909, 1530
Zsp2I ATGCAT 1 cut(s) 1440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.