Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008964

Physical Location & Seq

Genomic Coordinates Reverse (-)

27678500 .. 27679894

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTGTTCTCTTCTTAAGGTTTCAGAAATAGATGCAGAGGCAAACCTGGTCCTGATTATAAACATTTCAATACCGTGTGAGATTGGAGAACATATAGGACGAAATATCCGACTTCACACTCTTAAACAGGTTATAGGAAAGGCTACTGCGGGGGATACTTTGGGGGAAATCGGAGTATTATGTCATAGGCCGCAGCCTTTCACCGCTCGGACAACCGAACTTTCCCAAATATTACGACTCCGCAGAAGTTCACTCATGACCACTATACAAGCAAACAAGGATGATGAGCAGATTATCATGAACAACATTTTTCTGACTGATATTCTGTATTCTACTTTACAGAAACTGAAGGAACAAGAAGGGTTGGGCTGTGAATATCCACATACCGAAGGCTGCTGTTCTTGTGCGGGGTGCAAAGACAACTCGCATCAAGAACCATCAATGCAGGAAGCAAGGAATGATTTGTTTACAGGTTCAGAGACTATAGAAAAGAGCGAAATAGGCAAAGCTGATATTTCAACTAGATGTGCAATGGATGTCAGCACGATGGCTGAGGATGGCCAGATGGCTCTTCACACTGCTGTTTGCCAGGGAGATTTGGAAATGGTCAAAATTTTGGTCGAAGGAGGAGCAAATGTAAACAAACCAGATGCCAGAGGATGGACACCGAAAGATCTGGCACAACAGCAGGGAAACAAGAGCATAACTGACCTCTTACGAAGATATGAGAATAGGAGAATAGCCGAACATAGAATAGAGTTTATTGAACTGGAAACATCTGAAATCACCAGGAATTGTAAAGGAAATTCCAAAAGACACGAGGGTGCCCAATTTTCCCACTCTCACCGGAAAGAAGTGCCAATGAAGTGCTACCCGAGCAATTCTAGCCCAGATAGAGAAGGGATGAGATCAATCAACAATAGAGCAACTTGCGAAGTTAATAATCCTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0007623 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010118 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048511 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ion_trans KHA cNMP_binding

Protein Analysis

318

Amino Acids

35.34

Weight (kDa)

5.97

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18290 AT4G18290 AT5G46240
fragaria_vesca	FvH4_3g05650 FvH4_3g05650
malus_domestica	MD05G1284400.v1.1 MD10G1262800.v1.1
prunus_persica	Prupe.4G080000_v2.0.a1 Prupe.4G080000_v2.0.a1
pyrus_communis	pycom05g26360
rosa_chinensis	RchiOBHm_Chr5g0013991
rosa_laevigata	RLG00000032060
rosa_multiflora	Rmu_co8232297.1_g000001 Rmu_co8474133.1_g000001 Rmu_sc0005803.1_g000012
rosa_roxburghii	Rroxscaffold_1G00062720
rosa_rugosa	Rorug05G0013900
rosa_samantha	Rh5AG108400 Rh5BG105200 Rh5CG117000 Rh5DG103900
rosa_wichuraiana	Rw5G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	660
AccBSI	CCGCTC	1 cut(s)	206
AciI	CCGC	5 cut(s)	149, 191, 204, 241, 407
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	2 cut(s)	612, 805
AcuI	CTGAAG	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	660
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	69, 519, 767
AjnI	CCWGG	3 cut(s)	45, 588, 788
AleI	CACNNNNGTG	1 cut(s)	822
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	874
AoxI	GGCC	2 cut(s)	188, 559
ApeKI	GCWGC	2 cut(s)	193, 393
ApoI	RAATTY	2 cut(s)	612, 805
ArsI	GACNNNNNNTTYG	2 cut(s)	603, 635
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	3 cut(s)	193, 778, 836
AvaI	CYCGRG	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	829
BalI	TGGCCA	1 cut(s)	561
BanI	GGYRCC	1 cut(s)	824
BauI	CACGAG	1 cut(s)	818
BbvCI	CCTCAGC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	205, 380
BccI	CCATC	5 cut(s)	445, 541, 551, 559, 654
BciT130I	CCWGG	3 cut(s)	47, 590, 790
BciVI	GTATCC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	522, 885
BfmI	CTRYAG	1 cut(s)	483
BfrI	CTTAAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	3 cut(s)	191, 194, 394
BlsI	GCNGC	3 cut(s)	192, 195, 395
Bme1390I	CCNGG	3 cut(s)	47, 590, 790
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	874
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	3 cut(s)	47, 590, 790
BmsI	GCATC	3 cut(s)	22, 436, 640
Bpu10I	CCTNAGC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	589
BsaWI	WCCGGW	1 cut(s)	846
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	1 cut(s)	774
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	3 cut(s)	47, 590, 790
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	5 cut(s)	286, 541, 562, 665, 909
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	774
BseRI	GAGGAG	1 cut(s)	642
BseSI	GKGCMC	1 cut(s)	829
BseXI	GCAGC	2 cut(s)	205, 380
BshFI	GGCC	2 cut(s)	190, 561
BshNI	GGYRCC	1 cut(s)	824
BsiHKCI	CYCGRG	1 cut(s)	874
BsiSI	CCGG	1 cut(s)	847
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	190, 561
BsoBI	CYCGRG	1 cut(s)	874
Bsp1286I	GDGCHC	1 cut(s)	829
Bsp143I	GATC	2 cut(s)	673, 908
BspACI	CCGC	5 cut(s)	149, 191, 204, 241, 407
BspANI	GGCC	2 cut(s)	190, 561
BspCNI	CTCAG	1 cut(s)	544
BspHI	TCATGA	2 cut(s)	255, 297
BspLI	GGNNCC	1 cut(s)	826
BspQI	GCTCTTC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	824
BspTI	CTTAAG	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	774
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	2 cut(s)	673, 908
BssSI	CACGAG	1 cut(s)	818
Bst2BI	CACGAG	1 cut(s)	818
Bst2UI	CCWGG	3 cut(s)	47, 590, 790
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	2 cut(s)	15, 576
BstAFI	CTTAAG	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	552
BstF5I	GGATG	5 cut(s)	286, 541, 562, 665, 909
BstKTI	GATC	2 cut(s)	676, 911
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	673, 908
BstMWI	GCNNNNNNNGC	3 cut(s)	501, 876, 885
BstNI	CCWGG	3 cut(s)	47, 590, 790
BstSCI	CCNGG	3 cut(s)	45, 588, 788
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	829
BstV1I	GCAGC	2 cut(s)	205, 380
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	190, 561
BtsCI	GGATG	5 cut(s)	286, 541, 562, 665, 909
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
CaiI	CAGNNNCTG	1 cut(s)	346
CciI	TCATGA	2 cut(s)	255, 297
Cfr13I	GGNCC	1 cut(s)	49
CsiI	ACCWGGT	1 cut(s)	45
CviAII	CATG	2 cut(s)	256, 298
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	2 cut(s)	675, 910
DpnII	GATC	2 cut(s)	673, 908
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	2 cut(s)	15, 576
EarI	CTCTTC	2 cut(s)	15, 576
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	874
EcoRII	CCWGG	3 cut(s)	45, 588, 788
FaeI	CATG	2 cut(s)	259, 301
FatI	CATG	2 cut(s)	255, 297
FauI	CCCGC	2 cut(s)	142, 400
Fnu4HI	GCNGC	3 cut(s)	191, 194, 394
FokI	GGATG	5 cut(s)	293, 548, 569, 672, 916
Fsp4HI	GCNGC	3 cut(s)	191, 194, 394
FspBI	CTAG	2 cut(s)	522, 885
GluI	GCNGC	3 cut(s)	191, 194, 394
HaeIII	GGCC	2 cut(s)	190, 561
HapII	CCGG	1 cut(s)	847
Hin1II	CATG	2 cut(s)	259, 301
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	1 cut(s)	847
HphI	GGTGA	3 cut(s)	193, 778, 836
Hpy166II	GTNNAC	3 cut(s)	251, 468, 640
Hpy188I	TCNGA	7 cut(s)	25, 110, 173, 210, 315, 478, 781
Hpy188III	TCNNGA	4 cut(s)	52, 256, 298, 431
Hpy8I	GTNNAC	3 cut(s)	251, 468, 640
HpyAV	CCTTC	5 cut(s)	343, 353, 383, 617, 893
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	35, 414, 445, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	501, 876, 885
HpyF3I	CTNAG	1 cut(s)	552
Hsp92II	CATG	2 cut(s)	259, 301
Kzo9I	GATC	2 cut(s)	673, 908
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	629
Lsp1109I	GCAGC	2 cut(s)	205, 380
LweI	GCATC	3 cut(s)	22, 436, 640
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	2 cut(s)	522, 885
MalI	GATC	2 cut(s)	675, 910
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	2 cut(s)	673, 908
MboII	GAAGA	2 cut(s)	563, 732
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	1 cut(s)	829
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	5 cut(s)	612, 793, 805, 830, 880
MluNI	TGGCCA	1 cut(s)	561
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	31, 547, 620, 650, 722, 814
Mox20I	TGGCCA	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	3 cut(s)	15, 123, 939
MslI	CAYNNNNRTG	1 cut(s)	822
Msp20I	TGGCCA	1 cut(s)	561
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	3 cut(s)	47, 590, 790
MvaI	CCWGG	3 cut(s)	47, 590, 790
MwoI	GCNNNNNNNGC	3 cut(s)	501, 876, 885
NdeII	GATC	2 cut(s)	673, 908
NlaIII	CATG	2 cut(s)	259, 301
NlaIV	GGNNCC	1 cut(s)	826
OliI	CACNNNNGTG	1 cut(s)	822
PagI	TCATGA	2 cut(s)	255, 297
PciSI	GCTCTTC	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	660
PkrI	GCNGC	3 cut(s)	192, 195, 395
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	59
Psp6I	CCWGG	3 cut(s)	45, 588, 788
PspGI	CCWGG	3 cut(s)	45, 588, 788
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	673
RseI	CAYNNNNRTG	1 cut(s)	822
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	15, 123, 939
SatI	GCNGC	3 cut(s)	191, 194, 394
Sau3AI	GATC	2 cut(s)	673, 908
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	3 cut(s)	47, 590, 790
SduI	GDGCHC	1 cut(s)	829
SetI	ASST	7 cut(s)	21, 48, 132, 475, 511, 714, 953
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	3 cut(s)	22, 436, 640
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	5 cut(s)	612, 793, 805, 830, 880
SsiI	CCGC	5 cut(s)	149, 191, 204, 241, 407
SspI	AATATT	1 cut(s)	231
SspMI	CTAG	2 cut(s)	522, 885
StyD4I	CCNGG	3 cut(s)	45, 588, 788
TaaI	ACNGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	621
TasI	AATT	5 cut(s)	612, 793, 805, 830, 880
TauI	GCSGC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	15, 123, 939
Tru9I	TTAA	3 cut(s)	15, 123, 939
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	2 cut(s)	193, 393
TspDTI	ATGAA	2 cut(s)	314, 878
TspRI	CASTG	1 cut(s)	583
Van91I	CCANNNNNTGG	1 cut(s)	660
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	612, 805
XspI	CTAG	2 cut(s)	522, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.