Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008964

Physical Location & Seq

Genomic Coordinates Forward (+)

9956743 .. 9960259

Gene Structure 3517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG108400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCAGTTTCCGGCACAAAGAATTTCTTCAGGAGGTTTTGTATTGATGAATACCAAATAGATAGTGTTGCTCAGAGCAGCTTCTTCTCTAGTGATCTATTGCCATCTCTTGGAGCCAGAATCAACCAATCAACCAAGCTCCGAAAATACATTATATCGCCTTACAATCCTCGCTATAGGTACATATCAACCTGGTTTATTTTCGATGTGTGTTCCACTGCCCCATTCCAGCCTATTATTAGCCTCTTGTTTACAAATCATGGCAGCAAACTTGGCTTTAAAGTACTGAACATGCTCCGGCTCTGGCGCCTCAGACGAAAACTGAAAGGGGAAGATGGCTCAGGCTTTGAATATCCACATACAAATCCAGGCTTAATGCTTGACAATTGTCCTGGAGGAGGACAGAGAGGAGGATGCAAAGATAGCTCACATGAAGATGCAGCAATGCAGGAAGCAAGGAACAATTGCTTTACAGCTTCGCAGGCTAGGATGAAGAGTGAAATAGGCAAAGCTCAAATGACAGGTGAGAATGGCCAAACTGAAATTCAAGCTGCTGTTTGCCAGGGCCATCTGGAAAAGGTAAAAATTGTGGTTGAAGGAGGAGCAGATGTCAACAAACCGGAAGCTAGAGGATGGATGCCAAAAGGAGACAAGGACATACATGACCTCTTATTAAGTTATGAAAATAGAAGAGAAATGGATGAACATAGAATAGAGTTCATTGAGCCAGAAACATCTGGAAGCATCAGCAATTGTGAAGGAAATTGTAAAACACAGGAAGACCACCAACATATTCATTCTCACTTGAGAAAGGTAGCCATGAAGTCATATCAGTGCCCGTCTAGCCCTGCAAGTGACAGAGAACAAAGGATCAGATCATACAGCAAGAGAGTAACTATCCACATGCATTCTAAAAGTAAAAGTGTGTCGGAAAGGCAGCTTGCAAAATTAATAATTCTACCTGATTCCATAGACGAGCTGCTCAGAGTTGCTAGTGAGAAGTTTGGAGGCTATAGACCTACAAAAGTCGTGAATGCAGAAAATGCAGAAATAGAAGACATGAATGTCGTTAGAGATGGTGATCATCTGTTTCTTCTTCATAATGATTGTCAAAATTTGTACTCTGATGTGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0007623 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010118 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048511 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ion_trans KHA cNMP_binding

Protein Analysis

378

Amino Acids

42.83

Weight (kDa)

7.99

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KHA	PF11834	296 - 365	6.4e-25	KHA, dimerisation domain of potassium ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18290 AT4G18290 AT5G46240
fragaria_vesca	FvH4_3g05650 FvH4_3g05650
malus_domestica	MD05G1284400.v1.1 MD10G1262800.v1.1
prunus_persica	Prupe.4G080000_v2.0.a1 Prupe.4G080000_v2.0.a1
pyrus_communis	pycom05g26360
rosa_chinensis	RchiOBHm_Chr5g0013991
rosa_laevigata	RLG00000032060
rosa_multiflora	Rmu_co8232297.1_g000001 Rmu_co8474133.1_g000001 Rmu_sc0005803.1_g000012
rosa_roxburghii	Rroxscaffold_1G00062720
rosa_rugosa	Rorug05G0013900
rosa_samantha	Rh5AG108400 Rh5BG105200 Rh5CG117000 Rh5DG103900
rosa_wichuraiana	Rw5G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1064
AccB1I	GGYRCC	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	110
AclWI	GGATC	1 cut(s)	878
AcoI	YGGCCR	1 cut(s)	532
AcsI	RAATTY	3 cut(s)	22, 543, 1114
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	3 cut(s)	182, 285, 1121
AfiI	CCNNNNNNNGG	2 cut(s)	110, 398
AgsI	TTSAA	3 cut(s)	350, 548, 596
AjnI	CCWGG	4 cut(s)	191, 367, 391, 561
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	9 cut(s)	81, 139, 426, 476, 512, 551, 626, 940, 979
AluI	AGCT	9 cut(s)	81, 139, 426, 476, 512, 551, 626, 940, 979
Alw26I	GTCTC	1 cut(s)	642
AlwI	GGATC	1 cut(s)	878
AoxI	GGCC	2 cut(s)	532, 565
ApeKI	GCWGC	6 cut(s)	78, 264, 440, 551, 937, 979
ApoI	RAATTY	3 cut(s)	22, 543, 1114
AseI	ATTAAT	1 cut(s)	950
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	565
AsuHPI	GGTGA	2 cut(s)	536, 1091
BaeGI	GKGCMC	1 cut(s)	839
BalI	TGGCCA	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	306
BbsI	GAAGAC	2 cut(s)	786, 1062
BbvI	GCAGC	6 cut(s)	90, 276, 452, 538, 949, 966
BccI	CCATC	5 cut(s)	112, 329, 576, 627, 1070
BciT130I	CCWGG	4 cut(s)	193, 369, 393, 563
BclI	TGATCA	1 cut(s)	1081
BcoDI	GTCTC	1 cut(s)	642
BfaI	CTAG	5 cut(s)	90, 486, 627, 843, 993
BfmI	CTRYAG	2 cut(s)	175, 1012
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	6 cut(s)	79, 265, 441, 552, 938, 980
BlsI	GCNGC	6 cut(s)	80, 266, 442, 553, 939, 981
BmcAI	AGTACT	1 cut(s)	285
Bme1390I	CCNGG	4 cut(s)	193, 369, 393, 563
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	2 cut(s)	115, 308
BmrFI	CCNGG	4 cut(s)	193, 369, 393, 563
BmsI	GCATC	4 cut(s)	404, 427, 627, 753
BoxI	GACNNNNGTC	1 cut(s)	387
BpiI	GAAGAC	2 cut(s)	786, 1062
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	826
BsaBI	GATNNNNATC	1 cut(s)	1080
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	562
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 398
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	1080
BseBI	CCWGG	4 cut(s)	193, 369, 393, 563
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	5 cut(s)	419, 495, 638, 642, 706
BseJI	GATNNNNATC	1 cut(s)	1080
BseLI	CCNNNNNNNGG	2 cut(s)	110, 398
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	4 cut(s)	86, 325, 354, 997
BseRI	GAGGAG	3 cut(s)	411, 423, 615
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	6 cut(s)	90, 276, 452, 538, 949, 966
BshFI	GGCC	2 cut(s)	534, 567
BshNI	GGYRCC	1 cut(s)	306
BsiSI	CCGG	3 cut(s)	12, 298, 620
BslI	CCNNNNNNNGG	2 cut(s)	110, 398
BsmAI	GTCTC	1 cut(s)	642
BsmI	GAATGC	2 cut(s)	907, 1039
BsnI	GGCC	2 cut(s)	534, 567
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp143I	GATC	4 cut(s)	94, 870, 875, 1081
BspANI	GGCC	2 cut(s)	534, 567
BspCNI	CTCAG	4 cut(s)	85, 324, 353, 996
BspLI	GGNNCC	2 cut(s)	115, 308
BspPI	GGATC	1 cut(s)	878
BspT107I	GGYRCC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	4 cut(s)	94, 870, 875, 1081
BssNI	GRCGYC	1 cut(s)	307
Bst2UI	CCWGG	4 cut(s)	193, 369, 393, 563
Bst6I	CTCTTC	2 cut(s)	488, 685
BstACI	GRCGYC	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	1043
BstC8I	GCNNGC	2 cut(s)	483, 942
BstDEI	CTNAG	4 cut(s)	72, 311, 340, 983
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	5 cut(s)	419, 495, 638, 642, 706
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	4 cut(s)	97, 873, 878, 1084
BstMAI	GTCTC	1 cut(s)	642
BstMBI	GATC	4 cut(s)	94, 870, 875, 1081
BstMWI	GCNNNNNNNGC	5 cut(s)	273, 423, 482, 843, 1043
BstNI	CCWGG	4 cut(s)	193, 369, 393, 563
BstNSI	RCATGY	2 cut(s)	295, 907
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	4 cut(s)	191, 367, 391, 561
BstSFI	CTRYAG	2 cut(s)	175, 1012
BstSLI	GKGCMC	1 cut(s)	839
BstV1I	GCAGC	6 cut(s)	90, 276, 452, 538, 949, 966
BstV2I	GAAGAC	2 cut(s)	786, 1062
BsuRI	GGCC	2 cut(s)	534, 567
BtsCI	GGATG	5 cut(s)	419, 495, 638, 642, 706
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	216, 839
Cac8I	GCNNGC	2 cut(s)	483, 942
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	565
CsiI	ACCWGGT	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	181, 284, 1120
CviAII	CATG	7 cut(s)	260, 292, 431, 662, 820, 904, 1060
CviQI	GTAC	3 cut(s)	181, 284, 1120
DdeI	CTNAG	4 cut(s)	72, 311, 340, 983
DinI	GGCGCC	1 cut(s)	308
DpnI	GATC	4 cut(s)	96, 872, 877, 1083
DpnII	GATC	4 cut(s)	94, 870, 875, 1081
DraI	TTTAAA	1 cut(s)	280
DrdI	GACNNNNNNGTC	1 cut(s)	1064
DseDI	GACNNNNNNGTC	1 cut(s)	1064
EaeI	YGGCCR	1 cut(s)	532
Eam1104I	CTCTTC	2 cut(s)	488, 685
EarI	CTCTTC	2 cut(s)	488, 685
Eco57I	CTGAAG	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoRII	CCWGG	4 cut(s)	191, 367, 391, 561
EcoT22I	ATGCAT	1 cut(s)	909
EgeI	GGCGCC	1 cut(s)	308
EheI	GGCGCC	1 cut(s)	308
FaeI	CATG	7 cut(s)	263, 295, 434, 665, 823, 907, 1063
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	7 cut(s)	259, 291, 430, 661, 819, 903, 1059
FbaI	TGATCA	1 cut(s)	1081
Fnu4HI	GCNGC	6 cut(s)	79, 265, 441, 552, 938, 980
FokI	GGATG	5 cut(s)	426, 502, 645, 649, 713
Fsp4HI	GCNGC	6 cut(s)	79, 265, 441, 552, 938, 980
FspBI	CTAG	5 cut(s)	90, 486, 627, 843, 993
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	6 cut(s)	79, 265, 441, 552, 938, 980
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	534, 567
HapII	CCGG	3 cut(s)	12, 298, 620
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	7 cut(s)	263, 295, 434, 665, 823, 907, 1063
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	2 cut(s)	120, 965
HpaII	CCGG	3 cut(s)	12, 298, 620
HphI	GGTGA	2 cut(s)	536, 1091
Hpy166II	GTNNAC	2 cut(s)	252, 613
Hpy188I	TCNGA	7 cut(s)	75, 143, 314, 875, 931, 986, 1126
Hpy188III	TCNNGA	4 cut(s)	31, 572, 738, 1030
Hpy8I	GTNNAC	2 cut(s)	252, 613
HpyAV	CCTTC	2 cut(s)	590, 752
HpyCH4V	TGCA	8 cut(s)	417, 440, 448, 851, 907, 944, 1037, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	273, 423, 482, 843, 1043
HpyF3I	CTNAG	4 cut(s)	72, 311, 340, 983
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	7 cut(s)	263, 295, 434, 665, 823, 907, 1063
HspAI	GCGC	1 cut(s)	307
KasI	GGCGCC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	1081
Kzo9I	GATC	4 cut(s)	94, 870, 875, 1081
LmnI	GCTCC	4 cut(s)	113, 144, 300, 602
Lsp1109I	GCAGC	6 cut(s)	90, 276, 452, 538, 949, 966
LweI	GCATC	4 cut(s)	404, 427, 627, 753
MabI	ACCWGGT	1 cut(s)	191
MaeI	CTAG	5 cut(s)	90, 486, 627, 843, 993
MaeIII	GTNAC	3 cut(s)	854, 892, 1129
MalI	GATC	4 cut(s)	96, 872, 877, 1083
MboI	GATC	4 cut(s)	94, 870, 875, 1081
MfeI	CAATTG	3 cut(s)	385, 463, 751
MhlI	GDGCHC	1 cut(s)	839
MlsI	TGGCCA	1 cut(s)	534
MluNI	TGGCCA	1 cut(s)	534
Mly113I	GGCGCC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	909
Mox20I	TGGCCA	1 cut(s)	534
Mph1103I	ATGCAT	1 cut(s)	909
MroXI	GAANNNNTTC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	4 cut(s)	279, 374, 674, 950
MslI	CAYNNNNRTG	2 cut(s)	435, 832
Msp20I	TGGCCA	1 cut(s)	534
MspI	CCGG	3 cut(s)	12, 298, 620
MspR9I	CCNGG	4 cut(s)	193, 369, 393, 563
MunI	CAATTG	3 cut(s)	385, 463, 751
Mva1269I	GAATGC	2 cut(s)	907, 1039
MvaI	CCWGG	4 cut(s)	193, 369, 393, 563
MwoI	GCNNNNNNNGC	5 cut(s)	273, 423, 482, 843, 1043
NarI	GGCGCC	1 cut(s)	307
NdeII	GATC	4 cut(s)	94, 870, 875, 1081
NlaIII	CATG	7 cut(s)	263, 295, 434, 665, 823, 907, 1063
NlaIV	GGNNCC	2 cut(s)	115, 308
NmuCI	GTSAC	2 cut(s)	854, 1129
NsiI	ATGCAT	1 cut(s)	909
NspI	RCATGY	2 cut(s)	295, 907
PctI	GAATGC	2 cut(s)	907, 1039
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	120, 965
PflMI	CCANNNNNTGG	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	6 cut(s)	80, 266, 442, 553, 939, 981
PluTI	GGCGCC	1 cut(s)	310
PshAI	GACNNNNGTC	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	950
Psp6I	CCWGG	4 cut(s)	191, 367, 391, 561
PspGI	CCWGG	4 cut(s)	191, 367, 391, 561
PspN4I	GGNNCC	2 cut(s)	115, 308
PspPI	GGNCC	1 cut(s)	565
RsaI	GTAC	3 cut(s)	182, 285, 1121
RsaNI	GTAC	3 cut(s)	181, 284, 1120
RseI	CAYNNNNRTG	2 cut(s)	435, 832
SaqAI	TTAA	4 cut(s)	279, 374, 674, 950
SatI	GCNGC	6 cut(s)	79, 265, 441, 552, 938, 980
Sau3AI	GATC	4 cut(s)	94, 870, 875, 1081
Sau96I	GGNCC	1 cut(s)	565
ScaI	AGTACT	1 cut(s)	285
ScrFI	CCNGG	4 cut(s)	193, 369, 393, 563
SduI	GDGCHC	1 cut(s)	839
SexAI	ACCWGGT	1 cut(s)	191
SfaNI	GCATC	4 cut(s)	404, 427, 627, 753
SfcI	CTRYAG	2 cut(s)	175, 1012
SfoI	GGCGCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	2 cut(s)	435, 832
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
SspDI	GGCGCC	1 cut(s)	306
SspMI	CTAG	5 cut(s)	90, 486, 627, 843, 993
StyD4I	CCNGG	4 cut(s)	191, 367, 391, 561
TaqI	TCGA	1 cut(s)	204
TatI	WGTACW	2 cut(s)	283, 1119
TfiI	GAWTC	2 cut(s)	120, 965
Tru1I	TTAA	4 cut(s)	279, 374, 674, 950
Tru9I	TTAA	4 cut(s)	279, 374, 674, 950
TscAI	CASTG	2 cut(s)	223, 839
TseFI	GTSAC	2 cut(s)	854, 1129
TseI	GCWGC	6 cut(s)	78, 264, 440, 551, 937, 979
Tsp45I	GTSAC	2 cut(s)	854, 1129
TspRI	CASTG	2 cut(s)	223, 839
Van91I	CCANNNNNTGG	1 cut(s)	110
VspI	ATTAAT	1 cut(s)	950
XagI	CCTNNNNNAGG	1 cut(s)	396
XapI	RAATTY	3 cut(s)	22, 543, 1114
XceI	RCATGY	2 cut(s)	295, 907
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	5 cut(s)	90, 486, 627, 843, 993
ZrmI	AGTACT	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.