AT4G19190

N-terminal domain of CBF1 interacting co-repressor CIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012293
Physical Location & Seq
Forward (+)
10493200 .. 10496168
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19190.1

Sequence Viewer

Length: 1788 bp
ATGGACGGCGAAGGGGAAGGGAGCGGAATACGGCTGAGCAAGAGATTCGCTGGCGGGAAGGTCACCGGCGGTAGCTTAGAAGTCGATTACAAGACCAAATCCGGTACCGCTTGGAGCCACTCTTTCCTGAATCAGAAGCCATGGCATCCTCTTTCTTATCCCAATCAGCGCCGCAAATGGATCGCCGAGCAGACTCATGCCCAACACGATCGAAGAGCGGAAGAGGTGGCTCGCGAGTTTGCGCAAGAGCAGGAATTTTTCAAGCAAGCAGCTCTTATCTCGAAGAAAGAAAGAGAGAAGATCGAAACGATGAAAGCTGTGAGCTTTATGTATGTTCGTCCACCTGGCTATGATCCTGAAAGTGCCAAAGCAGCAGAATACAAGGATGAGAAACACAAGGGTCAGGGTTCTTCAACTCAGGATCCAGTGGCGGACGACAATGTTGGTTCTAGACCAGAAGAATCACAAGGTGGGGGAGAACGCACACAGGAAAGGAAGAAACCACGACCCAAAGATGTGTTTGGTCGTGCTCTTCCTACTGAAGAAGAATTTGAGGTTCTTAAAAATGCACCAAGGATGGAGACTGGTATTCCTGGGAGAGTAAAGCCATTTGCAGTTGAAGTGCGTAATGTGAAATGTCTGAGATGTGGAAACTTTGGGCACCAAAGCGGTGATCGTGACTGCCCATTAAAGGATGCAGTAATGCCAAATGAAGAACTTCGATTGAAAAGAGATGACCCGTTGACTGCTATCATTGCACATACAGATCCTAGTGAGCCTCTGAAGTGGGAATTAAAACAAAAGCCGGGCTTGAGTCCTCCTCGTGGTGGTTTTGATCCTGATGATCCAAATCAACAAATCGTCGCTGAAGATATATTTGACGAATATGGAGGGTTCCTTGAGGGCAGCATCCCAATAGAAATACTGAAGAGTATGTCGTCGGATAAGAAAAGAAAATCCAAAAAGAACAAAAGGCACAAGAAGCATTCATCTCGGACTGTTGAGGAAACTGATGAATCTTCAACAGGCTCAGAAGATAGTAGAGAGAAGAGGGGATCAAAGAAGCGCAAGAAACTTAAGAAGAAGAGCAAGAAGCAGTATGATTCTGATTCACTCTCCTTTGAAGGTTCAGGCTCTGATAGTTACCGTCTAAGTAGGAGAAGACACACCAAGCATGTAGATCCATCTGCCTCATTAAAATCTGAGGTTTACCATCAAGGAAACAGTCACAGAGAAAAGCATTACTACGACGAGAAGCACCAGAAACGGAAGGAAATCGTGGATAGACCGTCTGCTTCATCCGATGATTCAGATTATTATAGAAGTAACAGTAGTAGAAAGAAAAGATCAGAAGATGATTACAAAAGCCATCACAGGGAGAGAAAGCAAGTGCATAGTAACGATCCTGTTTCAGAGAAAAGTCAGAAACAGCATTATTCGGAGTCTGGAAAGATTCAGAGAGTCGAGAAAGAGCATAGATATGATGAGAGAAGACACAGATACGTCGATATGGAGTCTGAAAATCGTAATAGATCCGAGAAGAAACCGAGATATGATGATCGTGATTCTGAGAAGCATCACAGGAGTGTGAAGGGCAAAGAAAAGCATGTGTATGAAGCATCTGATGATCCTGAAGAGTTTTCTGACAGATACAGAAGCACAAAGAAAACTGAATCTGATTCGGAATCAAACCGTAGAAGTAGAAAGAAGAAGCATGAGTTGTCTTCCGAAGAAGAAGAAGGGGAGTCTCGTAAGCATCGATACAGCACTAATAGAAGGAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04330 map04330
Pfam Domains
Protein Families
Cir_N zf-CCHC_6

Protein Analysis

595

Amino Acids

69.15

Weight (kDa)

9.38

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 48 - 83 3.6e-10 N-terminal domain of CBF1 interacting co-repressor CIR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19190
fragaria_vesca FvH4_2g37380 FvH4_3g03932
malus_domestica MD08G1001400.v1.1
prunus_persica Prupe.1G353400_v2.0.a1 Prupe.1G353400_v2.0.a1
pyrus_communis pycom08g00080
rosa_chinensis RchiOBHm_Chr6g0304321
rosa_laevigata RLG00000010990
rosa_multiflora Rmu_co8215432.1_g000001 Rmu_ssc0000218.1_g000039
rosa_roxburghii Rroxscaffold_7G00163840
rosa_rugosa Rorug06G0330100 Rorug06G0330200
rosa_samantha Rh6AG443400 Rh6BG459000 Rh6CG456200 Rh6DG442900
rosa_wichuraiana Rw6G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 243
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 2 cut(s) 104, 660
AccBSI CCGCTC 2 cut(s) 24, 218
AccII CGCG 1 cut(s) 234
AciI CCGC 8 cut(s) 24, 54, 69, 108, 172, 218, 431, 669
AcsI RAATTY 2 cut(s) 254, 548
AcuI CTGAAG 5 cut(s) 561, 803, 888, 947, 1653
AdeI CACNNNGTG 1 cut(s) 470
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 4 cut(s) 691, 824, 827, 1375
AflII CTTAAG 1 cut(s) 1076
AgsI TTSAA 6 cut(s) 262, 414, 620, 727, 1023, 1124
AjnI CCWGG 2 cut(s) 343, 592
AleI CACNNNNGTG 1 cut(s) 1584
AluBI AGCT 4 cut(s) 75, 272, 317, 324
AluI AGCT 4 cut(s) 75, 272, 317, 324
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 2 cut(s) 575, 1752
AlwNI CAGNNNCTG 1 cut(s) 1136
ApeKI GCWGC 3 cut(s) 269, 371, 906
ApoI RAATTY 2 cut(s) 254, 548
Asp700I GAANNNNTTC 1 cut(s) 717
Asp718I GGTACC 1 cut(s) 104
AspLEI GCGC 3 cut(s) 171, 244, 1068
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 2 cut(s) 55, 683
BaeGI GKGCMC 1 cut(s) 663
BamHI GGATCC 1 cut(s) 421
BanI GGYRCC 2 cut(s) 104, 660
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 3 cut(s) 1168, 1498, 1716
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 3 cut(s) 281, 383, 918
BccI CCATC 4 cut(s) 571, 1192, 1221, 1377
BceAI ACGGC 2 cut(s) 22, 47
BcgI CGANNNNNNTGC 6 cut(s) 28, 62, 163, 197, 974, 1008
BciT130I CCWGG 2 cut(s) 345, 594
BcnI CCSGG 1 cut(s) 807
BcoDI GTCTC 2 cut(s) 575, 1752
BfaI CTAG 2 cut(s) 450, 771
BfoI RGCGCY 1 cut(s) 172
BfrI CTTAAG 1 cut(s) 1076
BisI GCNGC 4 cut(s) 172, 270, 372, 907
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 4 cut(s) 173, 271, 373, 908
Bme1390I CCNGG 3 cut(s) 345, 594, 807
BmiI GGNNCC 5 cut(s) 106, 116, 423, 662, 896
BmrFI CCNGG 3 cut(s) 345, 594, 807
BmsI GCATC 6 cut(s) 154, 685, 918, 1585, 1628, 1765
BpiI GAAGAC 3 cut(s) 1168, 1498, 1716
BplI GAGNNNNNCTC 2 cut(s) 805, 837
Bpu1102I GCTNAGC 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 832, 920
BpuMI CCSGG 1 cut(s) 807
Bsa29I ATCGAT 1 cut(s) 1759
BsaBI GATNNNNATC 1 cut(s) 849
BsaJI CCNNGG 3 cut(s) 140, 572, 593
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 4 cut(s) 691, 824, 827, 1375
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 425, 589
Bse3DI GCAATG 1 cut(s) 753
Bse8I GATNNNNATC 1 cut(s) 849
BseBI CCWGG 2 cut(s) 345, 594
BseCI ATCGAT 1 cut(s) 1759
BseDI CCNNGG 3 cut(s) 140, 572, 593
BseGI GGATG 6 cut(s) 145, 391, 582, 700, 909, 1298
BseJI GATNNNNATC 1 cut(s) 849
BseLI CCNNNNNNNGG 4 cut(s) 691, 824, 827, 1375
BseMI GCAATG 1 cut(s) 753
BseMII CTCAG 6 cut(s) 26, 431, 632, 1044, 1194, 1560
BseNI ACTGG 2 cut(s) 425, 589
BseRI GAGGAG 1 cut(s) 810
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 3 cut(s) 281, 383, 918
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 211
BshNI GGYRCC 2 cut(s) 104, 660
BshVI ATCGAT 1 cut(s) 1759
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 532
BsiSI CCGG 3 cut(s) 66, 102, 806
BslI CCNNNNNNNGG 4 cut(s) 691, 824, 827, 1375
BsmAI GTCTC 2 cut(s) 575, 1752
BsmI GAATGC 1 cut(s) 985
Bsp1286I GDGCHC 2 cut(s) 532, 663
Bsp1720I GCTNAGC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 140
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 8 cut(s) 24, 54, 69, 108, 172, 218, 431, 669
BspCNI CTCAG 6 cut(s) 27, 430, 633, 1043, 1195, 1561
BspDI ATCGAT 1 cut(s) 1759
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 5 cut(s) 106, 116, 423, 662, 896
BspQI GCTCTTC 3 cut(s) 208, 537, 1079
BspT107I GGYRCC 2 cut(s) 104, 660
BspTI CTTAAG 1 cut(s) 1076
BsrBI CCGCTC 2 cut(s) 24, 218
BsrDI GCAATG 1 cut(s) 753
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 2 cut(s) 425, 589
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 140, 572, 593
BssSI CACGAG 1 cut(s) 822
BssT1I CCWWGG 2 cut(s) 140, 572
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 2 cut(s) 345, 594
Bst4CI ACNGT 6 cut(s) 1000, 1148, 1226, 1290, 1331, 1694
Bst6I CTCTTC 7 cut(s) 208, 216, 537, 923, 1043, 1079, 1629
BstAFI CTTAAG 1 cut(s) 1076
BstC8I GCNNGC 3 cut(s) 52, 232, 267
BstDEI CTNAG 8 cut(s) 35, 76, 417, 641, 1030, 1151, 1203, 1569
BstDSI CCRYGG 1 cut(s) 140
BstEII GGTNACC 1 cut(s) 61
BstF5I GGATG 6 cut(s) 145, 391, 582, 700, 909, 1298
BstFNI CGCG 1 cut(s) 234
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 3 cut(s) 171, 244, 1068
BstMAI GTCTC 2 cut(s) 575, 1752
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 371, 755, 982
BstNI CCWGG 2 cut(s) 345, 594
BstNSI RCATGY 2 cut(s) 1178, 1610
BstPI GGTNACC 1 cut(s) 61
BstSCI CCNGG 3 cut(s) 343, 592, 805
BstSLI GKGCMC 1 cut(s) 663
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 3 cut(s) 281, 383, 918
BstV2I GAAGAC 3 cut(s) 1168, 1498, 1716
BstX2I RGATCY 4 cut(s) 421, 766, 1180, 1532
BstYI RGATCY 4 cut(s) 421, 766, 1180, 1532
Bsu15I ATCGAT 1 cut(s) 1759
BsuTUI ATCGAT 1 cut(s) 1759
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 6 cut(s) 145, 391, 582, 700, 909, 1298
BtsIMutI CAGTG 1 cut(s) 432
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 52, 232, 267
CaiI CAGNNNCTG 1 cut(s) 1136
CfoI GCGC 3 cut(s) 171, 244, 1068
Cfr10I RCCGGY 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 1759
Csp6I GTAC 1 cut(s) 105
CviAII CATG 5 cut(s) 141, 197, 1175, 1607, 1715
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 8 cut(s) 35, 76, 417, 641, 1030, 1151, 1203, 1569
DraIII CACNNNGTG 1 cut(s) 470
Eam1104I CTCTTC 7 cut(s) 208, 216, 537, 923, 1043, 1079, 1629
EarI CTCTTC 7 cut(s) 208, 216, 537, 923, 1043, 1079, 1629
EciI GGCGGA 1 cut(s) 446
Eco130I CCWWGG 2 cut(s) 140, 572
Eco57I CTGAAG 5 cut(s) 561, 803, 888, 947, 1653
Eco91I GGTNACC 1 cut(s) 61
EcoO65I GGTNACC 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 343, 592
EcoT14I CCWWGG 2 cut(s) 140, 572
ErhI CCWWGG 2 cut(s) 140, 572
FaeI CATG 5 cut(s) 144, 200, 1178, 1610, 1718
FalI AAGNNNNNCTT 4 cut(s) 258, 290, 794, 826
FatI CATG 5 cut(s) 140, 196, 1174, 1606, 1714
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 4 cut(s) 172, 270, 372, 907
FokI GGATG 6 cut(s) 132, 398, 589, 707, 896, 1285
Fsp4HI GCNGC 4 cut(s) 172, 270, 372, 907
FspBI CTAG 2 cut(s) 450, 771
FspI TGCGCA 1 cut(s) 243
GlaI GCGC 3 cut(s) 170, 243, 1067
GluI GCNGC 4 cut(s) 172, 270, 372, 907
HaeII RGCGCY 1 cut(s) 172
HapII CCGG 3 cut(s) 66, 102, 806
HhaI GCGC 3 cut(s) 171, 244, 1068
Hin1II CATG 5 cut(s) 144, 200, 1178, 1610, 1718
Hin6I GCGC 3 cut(s) 169, 242, 1066
HinP1I GCGC 3 cut(s) 169, 242, 1066
HincII GTYRAC 1 cut(s) 744
HindII GTYRAC 1 cut(s) 744
HpaII CCGG 3 cut(s) 66, 102, 806
HphI GGTGA 2 cut(s) 55, 683
Hpy166II GTNNAC 3 cut(s) 341, 744, 1210
Hpy8I GTNNAC 3 cut(s) 341, 744, 1210
Hpy99I CGWCG 4 cut(s) 866, 943, 1253, 1508
HpyAV CCTTC 8 cut(s) 5, 11, 52, 1118, 1264, 1585, 1733, 1770
HpyCH4III ACNGT 6 cut(s) 1000, 1148, 1226, 1290, 1331, 1694
HpyCH4IV ACGT 1 cut(s) 1503
HpyCH4V TGCA 5 cut(s) 569, 614, 698, 758, 1393
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 755, 982
HpyF3I CTNAG 8 cut(s) 35, 76, 417, 641, 1030, 1151, 1203, 1569
HpySE526I ACGT 1 cut(s) 1503
Hsp92II CATG 5 cut(s) 144, 200, 1178, 1610, 1718
HspAI GCGC 3 cut(s) 169, 242, 1066
KpnI GGTACC 1 cut(s) 108
LguI GCTCTTC 3 cut(s) 208, 537, 1079
LmnI GCTCC 2 cut(s) 21, 114
Lsp1109I GCAGC 3 cut(s) 281, 383, 918
LweI GCATC 6 cut(s) 154, 685, 918, 1585, 1628, 1765
MaeI CTAG 2 cut(s) 450, 771
MaeII ACGT 1 cut(s) 1503
MaeIII GTNAC 6 cut(s) 61, 677, 1142, 1226, 1325, 1397
MbiI CCGCTC 2 cut(s) 24, 218
MflI RGATCY 4 cut(s) 421, 766, 1180, 1532
MhlI GDGCHC 2 cut(s) 532, 663
MluCI AATT 3 cut(s) 254, 548, 791
MlyI GAGTC 6 cut(s) 187, 823, 1451, 1470, 1523, 1754
MmeI TCCRAC 1 cut(s) 921
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 5 cut(s) 561, 689, 794, 1077, 1196
MslI CAYNNNNRTG 3 cut(s) 1479, 1584, 1611
MspCI CTTAAG 1 cut(s) 1076
MspI CCGG 3 cut(s) 66, 102, 806
MspR9I CCNGG 3 cut(s) 345, 594, 807
Mva1269I GAATGC 1 cut(s) 985
MvaI CCWGG 2 cut(s) 345, 594
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 371, 755, 982
NciI CCSGG 1 cut(s) 807
NcoI CCATGG 1 cut(s) 140
NlaIII CATG 5 cut(s) 144, 200, 1178, 1610, 1718
NlaIV GGNNCC 5 cut(s) 106, 116, 423, 662, 896
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 3 cut(s) 61, 677, 1226
NruI TCGCGA 1 cut(s) 234
NsbI TGCGCA 1 cut(s) 243
NspI RCATGY 2 cut(s) 1178, 1610
OliI CACNNNNGTG 1 cut(s) 1584
PciSI GCTCTTC 3 cut(s) 208, 537, 1079
PcsI WCGNNNNNNNCGW 1 cut(s) 1756
PctI GAATGC 1 cut(s) 985
PdmI GAANNNNTTC 1 cut(s) 717
PkrI GCNGC 4 cut(s) 173, 271, 373, 908
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 6 cut(s) 187, 822, 1450, 1469, 1522, 1753
PpsI GAGTC 6 cut(s) 187, 822, 1450, 1469, 1522, 1753
Psp6I CCWGG 2 cut(s) 343, 592
PspEI GGTNACC 1 cut(s) 61
PspGI CCWGG 2 cut(s) 343, 592
PspN4I GGNNCC 5 cut(s) 106, 116, 423, 662, 896
PstNI CAGNNNCTG 1 cut(s) 1136
PsuI RGATCY 4 cut(s) 421, 766, 1180, 1532
PvuI CGATCG 1 cut(s) 211
RruI TCGCGA 1 cut(s) 234
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 3 cut(s) 1479, 1584, 1611
SapI GCTCTTC 3 cut(s) 208, 537, 1079
SaqAI TTAA 5 cut(s) 561, 689, 794, 1077, 1196
SatI GCNGC 4 cut(s) 172, 270, 372, 907
SchI GAGTC 6 cut(s) 187, 823, 1451, 1470, 1523, 1754
ScrFI CCNGG 3 cut(s) 345, 594, 807
SduI GDGCHC 2 cut(s) 532, 663
SfaNI GCATC 6 cut(s) 154, 685, 918, 1585, 1628, 1765
SgrAI CRCCGGYG 1 cut(s) 65
SmiMI CAYNNNNRTG 3 cut(s) 1479, 1584, 1611
SmlI CTYRAG 3 cut(s) 811, 899, 1076
SmoI CTYRAG 3 cut(s) 811, 899, 1076
Sse9I AATT 3 cut(s) 254, 548, 791
SsiI CCGC 8 cut(s) 24, 54, 69, 108, 172, 218, 431, 669
SspMI CTAG 2 cut(s) 450, 771
StyD4I CCNGG 3 cut(s) 343, 592, 805
StyI CCWWGG 2 cut(s) 140, 572
TaaI ACNGT 6 cut(s) 1000, 1148, 1226, 1290, 1331, 1694
TaiI ACGT 1 cut(s) 1506
TaqI TCGA 8 cut(s) 84, 211, 281, 303, 721, 1464, 1506, 1759
TasI AATT 3 cut(s) 254, 548, 791
TauI GCSGC 1 cut(s) 174
Tru1I TTAA 5 cut(s) 561, 689, 794, 1077, 1196
Tru9I TTAA 5 cut(s) 561, 689, 794, 1077, 1196
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 3 cut(s) 61, 677, 1226
TseI GCWGC 3 cut(s) 269, 371, 906
Tsp45I GTSAC 3 cut(s) 61, 677, 1226
TspDTI ATGAA 6 cut(s) 326, 726, 978, 1029, 1287, 1629
TspGWI ACGGA 1 cut(s) 1282
TspRI CASTG 1 cut(s) 432
Vha464I CTTAAG 1 cut(s) 1076
XapI RAATTY 2 cut(s) 254, 548
XbaI TCTAGA 1 cut(s) 449
XceI RCATGY 2 cut(s) 1178, 1610
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 2 cut(s) 450, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.