Rmu_ssc0000218.1_g000039

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000218.1
OG0012293
Physical Location & Seq
Forward (+)
150074 .. 150481
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000218.1_g000039.1.cds

Sequence Viewer

Length: 306 bp
atggaaggcgaagaaggaggagggataaggctgagcaagaggttctcagacaaaggaggcgaagtcgataacaaaaccaagtcagggacggcgtggagccactcgtacctgaaccagaagccatggcaccctctctcttaccccaaccaacgccgcaagtggatcgccgagcagatccaggcccagcaccagcgtcgctccgaagaagtctcccgcgagtatgcgcaagagcaggagttctttcgccaggcagctctcatctccaagaaagataaagaaaaggttctttcctcgtttaatatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04330 map04330
Pfam Domains
Protein Families
Cir_N zf-CCHC_6

Protein Analysis

101

Amino Acids

11.81

Weight (kDa)

9.47

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19190
fragaria_vesca FvH4_2g37380 FvH4_3g03932
malus_domestica MD08G1001400.v1.1
prunus_persica Prupe.1G353400_v2.0.a1 Prupe.1G353400_v2.0.a1
pyrus_communis pycom08g00080
rosa_chinensis RchiOBHm_Chr6g0304321
rosa_laevigata RLG00000010990
rosa_multiflora Rmu_co8215432.1_g000001 Rmu_ssc0000218.1_g000039
rosa_roxburghii Rroxscaffold_7G00163840
rosa_rugosa Rorug06G0330100 Rorug06G0330200
rosa_samantha Rh6AG443400 Rh6BG459000 Rh6CG456200 Rh6DG442900
rosa_wichuraiana Rw6G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 126
AccII CGCG 1 cut(s) 216
AciI CCGC 2 cut(s) 154, 214
AclWI GGATC 2 cut(s) 169, 170
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 84
AjnI CCWGG 2 cut(s) 177, 246
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 2 cut(s) 169, 170
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 4 cut(s) 145, 176, 179, 210
BciT130I CCWGG 2 cut(s) 179, 248
BcoDI GTCTC 1 cut(s) 214
BisI GCNGC 2 cut(s) 154, 252
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 2 cut(s) 155, 253
Bme1390I CCNGG 2 cut(s) 179, 248
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 98, 128
BmrFI CCNGG 2 cut(s) 179, 248
Bpu1102I GCTNAGC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 179, 248
BseDI CCNNGG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 23, 60
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 126
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 182
Bsp143I GATC 2 cut(s) 162, 174
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 122
BspACI CCGC 2 cut(s) 154, 214
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 24, 59
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 98, 128
BspPI GGATC 2 cut(s) 169, 170
BspT107I GGYRCC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 2 cut(s) 162, 174
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 179, 248
BstDEI CTNAG 2 cut(s) 32, 46
BstDSI CCRYGG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 165, 177
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 2 cut(s) 162, 174
BstNI CCWGG 2 cut(s) 179, 248
BstSCI CCNGG 2 cut(s) 177, 246
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 122
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 123
CviJI RGCY 5 cut(s) 31, 99, 121, 182, 254
CviKI_1 RGCY 5 cut(s) 31, 99, 121, 182, 254
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 2 cut(s) 32, 46
DpnI GATC 2 cut(s) 164, 176
DpnII GATC 2 cut(s) 162, 174
Eco130I CCWWGG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 177, 246
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 1 cut(s) 126
FaiI YATR 2 cut(s) 124, 222
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 122
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 154, 252
Fsp4HI GCNGC 2 cut(s) 154, 252
FspI TGCGCA 1 cut(s) 225
GlaI GCGC 1 cut(s) 225
GluI GCNGC 2 cut(s) 154, 252
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 182
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 226
Hin1II CATG 1 cut(s) 126
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
Hpy188I TCNGA 3 cut(s) 49, 202, 305
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 8
HpyF3I CTNAG 2 cut(s) 32, 46
Hsp92II CATG 1 cut(s) 126
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 162, 174
LmnI GCTCC 2 cut(s) 96, 203
Lsp1109I GCAGC 1 cut(s) 263
MalI GATC 2 cut(s) 164, 176
MboI GATC 2 cut(s) 162, 174
MboII GAAGA 2 cut(s) 23, 215
MflI RGATCY 1 cut(s) 174
MnlI CCTC 6 cut(s) 11, 14, 33, 50, 141, 301
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 1 cut(s) 297
MspR9I CCNGG 2 cut(s) 179, 248
MvaI CCWGG 2 cut(s) 179, 248
MvnI CGCG 1 cut(s) 216
NcoI CCATGG 1 cut(s) 122
NdeII GATC 2 cut(s) 162, 174
NlaIII CATG 1 cut(s) 126
NlaIV GGNNCC 2 cut(s) 98, 128
NmeAIII GCCGAG 1 cut(s) 193
NsbI TGCGCA 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 282
PkrI GCNGC 2 cut(s) 155, 253
Psp6I CCWGG 2 cut(s) 177, 246
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 2 cut(s) 177, 246
PspN4I GGNNCC 2 cut(s) 98, 128
PspPI GGNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 2 cut(s) 154, 252
Sau3AI GATC 2 cut(s) 162, 174
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 2 cut(s) 179, 248
SetI ASST 4 cut(s) 44, 111, 256, 285
SsiI CCGC 2 cut(s) 154, 214
StyD4I CCNGG 2 cut(s) 177, 246
StyI CCWWGG 1 cut(s) 122
TaqI TCGA 1 cut(s) 66
TauI GCSGC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseI GCWGC 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.