Rroxscaffold_7G00163840

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012293
Physical Location & Seq
Reverse (-)
6000795 .. 6004362
3568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163840.1

Sequence Viewer

Length: 1842 bp
ATGGAGGGCGAAGAAGGAGGAGGGATAAGGCTGAGCAAGAGGTTCTCAGACAAAGGAGGCGAAGTTGATAACAAAACCAAGTCAGGGACGGCGTGGAGCCACTCGTACCTGAACCAGAAGCCATGGCACCCTCTCTCTTACCCCAACCAACGCCGCAAGTGGATCGCCGAGCAGATCCAGGCCCAGCACCAGCGTCGCTCCGAAGAATATGCGCAAGAGCAGGAGTTCTTTCGCCAGGCAGCTCTCATCTCCAAGAAAGATAAAGAAAAGATTGAGACGATGAAAGCTGTTAGCTTCATGTATGTTCGTCCGCCGGGTTACAATGCCGAGAGTGCCAAAGCTGCAGAGCTTGCCGATGAGAGTATGAGAGATGGTCAACAAACACAAACAGATGGTCCTTCTACTTCAATTGGTGAAGAAGGCAAGAAGAAACCGAGGCCTAAAGATGTATTTGGCCGCAGTTTGCCTACCGAACAAGAGTTTGAAGTGTTGAAAAATGCTCCTAGGCTGGAGACTGGTGTTCCTACGAGGGCAAAACCATTTGGAGTTGAAGTGCGCAATGTAAAGTGTGTCAGGTGTGGAACATTTGGTCACCAAAGCGGTGATCGTGAATGTCCATTGAAGGATGCTATTATGCCTAATGAAGAGAACCGACTGAAAAGGGACGATCCTTTGACTGCCATTCTTGCACACACAGATCCTAGTGAGCCTCTGAAGTGGGAACTCAAGCAAAAACCAGGAATTAGTCCTCCACGTGGAGGGTTTAGGCCAGATGACCCCAACCAGCAAATAGTTGCCGAGGAGGATATATTTGATGAGTATGGAGGATTTCTCAGTGGGGATGTCATCCCTGAGTTGCTGGCCAACTTCTCGAGCAAACCCAAGAAGAAGTCCAAAAAGAAGACCAAGCGCAAAACAAAGCAGTCACCATCCATTAGTGGAGAAGACCTGTCATCTTCTGATGAGGATGGCAAGAGGGGGTCAAAGAAGAAAGTATCCAAGCTAAAGAAAAAGAAGCGTAATCATTCTGAATCGAGCTCACCAGAGATTGATAGACATAAAGTAAAGAATAAAGACGAGGAATCTTATTCATCCGAGGATTTGAATCATGAAAAACATCACAGAAGTACAAAGAACAGACCGAAGCATTCTCAATCATTTGAAGATTCTGACATGGACAGGTGGCAGTACAGAAGAGACAAGAACAGAGACAGAGATGCTAATTCATCTGAAGATTCTGAGCCTGATAAGAACCAAAGAGGTACTAGACACAAGCATTCTTACTCATCTGAGGATTCGGATGGTGAAAAACATCATAGAAGTACAAAGAACAGAAGAGACAAGAACAGAGACAGAGATGCTAATTCATCTGAAGATTCTGAGCCTGATAAGAACCAAAGAGGTACCAGACATAAGCATTCTTACTCATCTGAGGATTCGGATGGTGAAAAACATCATAGAAGTACAAAGAACAGACAGAGGCACTCTCATTCATATAAAGATTTTGAGATTAATAGGCATTTTAGAAGGGAGAAGAGCAGGGACAGTTGTGCCAATTCATTTGAAGATTCTGAGCCTGATAGGCACCTTCCAAGTGACAAGCGAAGACACCAGAGCAGACACCGACATTCTTATTTATCCGAAGATTCTGAGCCTGATAGGCACCATTCAAGTGACAAGAGAAGACAGTGGAGCAGACACCGGCATTCTTATTCGTCTGAAGATACTGACATAGGCAGGCAGAAAAGAAGTAAAAGAAGCAGGGATGAGTCTACCTATTCATTTAATGAGACCGATGATAAAAGGCATCGTACAAGTAGAAACAGCAGACACAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04330 map04330
Pfam Domains
Protein Families
Cir_N zf-CCHC_6

Protein Analysis

613

Amino Acids

71.4

Weight (kDa)

9.48

Isoelectric Point (pI)

68.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 42 - 74 8.2e-08 N-terminal domain of CBF1 interacting co-repressor CIR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19190
fragaria_vesca FvH4_2g37380 FvH4_3g03932
malus_domestica MD08G1001400.v1.1
prunus_persica Prupe.1G353400_v2.0.a1 Prupe.1G353400_v2.0.a1
pyrus_communis pycom08g00080
rosa_chinensis RchiOBHm_Chr6g0304321
rosa_laevigata RLG00000010990
rosa_multiflora Rmu_co8215432.1_g000001 Rmu_ssc0000218.1_g000039
rosa_roxburghii Rroxscaffold_7G00163840
rosa_rugosa Rorug06G0330100 Rorug06G0330200
rosa_samantha Rh6AG443400 Rh6BG459000 Rh6CG456200 Rh6DG442900
rosa_wichuraiana Rw6G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 213, 557
Acc65I GGTACC 1 cut(s) 1403
AccB1I GGYRCC 4 cut(s) 126, 1403, 1584, 1662
AccI GTMKAC 1 cut(s) 1772
AciI CCGC 4 cut(s) 154, 311, 457, 600
AclWI GGATC 4 cut(s) 169, 170, 662, 692
AcoI YGGCCR 2 cut(s) 454, 861
AcuI CTGAAG 4 cut(s) 734, 1251, 1392, 1740
AcvI CACGTG 1 cut(s) 755
AfaI GTAC 8 cut(s) 107, 1129, 1190, 1264, 1324, 1405, 1465, 1813
AfiI CCNNNNNNNGG 3 cut(s) 84, 755, 758
AgsI TTSAA 9 cut(s) 408, 485, 493, 551, 622, 1105, 1163, 1565, 1671
AjnI CCWGG 3 cut(s) 177, 234, 736
AluBI AGCT 7 cut(s) 242, 287, 294, 341, 349, 1003, 1038
AluI AGCT 7 cut(s) 242, 287, 294, 341, 349, 1003, 1038
Alw21I GWGCWC 1 cut(s) 1040
Alw26I GTCTC 7 cut(s) 269, 506, 1191, 1203, 1332, 1344, 1784
AlwI GGATC 4 cut(s) 169, 170, 662, 692
Ama87I CYCGRG 1 cut(s) 871
AoxI GGCC 5 cut(s) 180, 437, 454, 767, 861
ApeKI GCWGC 2 cut(s) 239, 341
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
AseI ATTAAT 1 cut(s) 1512
Asp718I GGTACC 1 cut(s) 1403
AspA2I CCTAGG 1 cut(s) 503
AspLEI GCGC 3 cut(s) 214, 558, 912
AspS9I GGNCC 2 cut(s) 181, 395
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 7 cut(s) 425, 584, 614, 918, 1032, 1316, 1457
AvaI CYCGRG 1 cut(s) 871
AvaII GGWCC 1 cut(s) 395
AvrII CCTAGG 1 cut(s) 503
BalI TGGCCA 1 cut(s) 863
BanI GGYRCC 4 cut(s) 126, 1403, 1584, 1662
BanII GRGCYC 1 cut(s) 1040
BbrPI CACGTG 1 cut(s) 755
BbsI GAAGAC 4 cut(s) 908, 951, 1612, 1690
Bbv12I GWGCWC 1 cut(s) 1040
BbvI GCAGC 2 cut(s) 251, 328
BccI CCATC 6 cut(s) 365, 386, 937, 962, 1295, 1436
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 6 cut(s) 145, 176, 179, 191, 210, 225
BciT130I CCWGG 3 cut(s) 179, 236, 738
BciVI GTATCC 1 cut(s) 1006
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 7 cut(s) 269, 506, 1191, 1203, 1332, 1344, 1784
BfaI CTAG 4 cut(s) 504, 702, 1266, 1840
BfmI CTRYAG 1 cut(s) 342
BfuI GTATCC 1 cut(s) 1006
BglI GCCNNNNNGGC 2 cut(s) 1582, 1660
BisI GCNGC 4 cut(s) 154, 240, 342, 457
BlnI CCTAGG 1 cut(s) 503
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 4 cut(s) 155, 241, 343, 458
Bme1390I CCNGG 4 cut(s) 179, 236, 315, 738
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 871
BmgT120I GGNCC 2 cut(s) 181, 395
BmiI GGNNCC 5 cut(s) 98, 128, 1405, 1586, 1664
BmrFI CCNGG 4 cut(s) 179, 236, 315, 738
BmsI GCATC 4 cut(s) 616, 1207, 1348, 1816
BpiI GAAGAC 4 cut(s) 908, 951, 1612, 1690
BplI GAGNNNNNCTC 4 cut(s) 816, 848, 1471, 1503
BpmI CTGGAG 1 cut(s) 530
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 755
BsaBI GATNNNNATC 1 cut(s) 1104
BsaI GGTCTC 1 cut(s) 1784
BsaJI CCNNGG 5 cut(s) 122, 434, 503, 798, 1095
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 755, 758
Bse118I RCCGGY 1 cut(s) 1701
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 565
Bse8I GATNNNNATC 1 cut(s) 1104
BseBI CCWGG 3 cut(s) 179, 236, 738
BseDI CCNNGG 5 cut(s) 122, 434, 503, 798, 1095
BseGI GGATG 9 cut(s) 631, 846, 847, 929, 973, 1091, 1306, 1447, 1771
BseJI GATNNNNATC 1 cut(s) 1104
BseLI CCNNNNNNNGG 3 cut(s) 84, 755, 758
BseMI GCAATG 1 cut(s) 565
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 2 cut(s) 33, 815
BseXI GCAGC 2 cut(s) 251, 328
BseYI CCCAGC 1 cut(s) 183
BshFI GGCC 5 cut(s) 182, 439, 456, 769, 863
BshNI GGYRCC 4 cut(s) 126, 1403, 1584, 1662
BsiHKAI GWGCWC 1 cut(s) 1040
BsiHKCI CYCGRG 1 cut(s) 871
BsiSI CCGG 2 cut(s) 314, 1702
BslFI GGGAC 3 cut(s) 100, 677, 1556
BslI CCNNNNNNNGG 3 cut(s) 84, 755, 758
BsmAI GTCTC 7 cut(s) 269, 506, 1191, 1203, 1332, 1344, 1784
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 3 cut(s) 100, 677, 1556
BsmI GAATGC 4 cut(s) 1147, 1276, 1417, 1705
BsnI GGCC 5 cut(s) 182, 439, 456, 769, 863
Bso31I GGTCTC 1 cut(s) 1784
BsoBI CYCGRG 1 cut(s) 871
Bsp1286I GDGCHC 1 cut(s) 1040
Bsp143I GATC 5 cut(s) 162, 174, 604, 667, 697
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 122
BspACI CCGC 4 cut(s) 154, 311, 457, 600
BspANI GGCC 5 cut(s) 182, 439, 456, 769, 863
BspHI TCATGA 1 cut(s) 1108
BspLI GGNNCC 5 cut(s) 98, 128, 1405, 1586, 1664
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 4 cut(s) 169, 170, 662, 692
BspQI GCTCTTC 1 cut(s) 1529
BspT107I GGYRCC 4 cut(s) 126, 1403, 1584, 1662
BspTNI GGTCTC 1 cut(s) 1784
BsrDI GCAATG 1 cut(s) 565
BsrFI RCCGGY 1 cut(s) 1701
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 1701
BssECI CCNNGG 5 cut(s) 122, 434, 503, 798, 1095
BssMI GATC 5 cut(s) 162, 174, 604, 667, 697
BssT1I CCWWGG 2 cut(s) 122, 503
Bst2UI CCWGG 3 cut(s) 179, 236, 738
Bst4CI ACNGT 2 cut(s) 1547, 1689
Bst6I CTCTTC 4 cut(s) 639, 1189, 1330, 1529
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 755
BstC8I GCNNGC 3 cut(s) 351, 861, 1739
BstDSI CCRYGG 1 cut(s) 122
BstEII GGTNACC 1 cut(s) 590
BstF5I GGATG 9 cut(s) 631, 846, 847, 929, 973, 1091, 1306, 1447, 1771
BstHHI GCGC 3 cut(s) 214, 558, 912
BstKTI GATC 5 cut(s) 165, 177, 607, 670, 700
BstMAI GTCTC 7 cut(s) 269, 506, 1191, 1203, 1332, 1344, 1784
BstMBI GATC 5 cut(s) 162, 174, 604, 667, 697
BstMWI GCNNNNNNNGC 6 cut(s) 332, 341, 350, 686, 1582, 1660
BstNI CCWGG 3 cut(s) 179, 236, 738
BstPI GGTNACC 1 cut(s) 590
BstSCI CCNGG 4 cut(s) 177, 234, 313, 736
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 251, 328
BstV2I GAAGAC 4 cut(s) 908, 951, 1612, 1690
BstX2I RGATCY 2 cut(s) 174, 697
BstYI RGATCY 2 cut(s) 174, 697
BsuI GTATCC 1 cut(s) 1006
BsuRI GGCC 5 cut(s) 182, 439, 456, 769, 863
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 9 cut(s) 631, 846, 847, 929, 973, 1091, 1306, 1447, 1771
BtsIMutI CAGTG 2 cut(s) 841, 1694
Cac8I GCNNGC 3 cut(s) 351, 861, 1739
CciI TCATGA 1 cut(s) 1108
CfoI GCGC 3 cut(s) 214, 558, 912
Cfr10I RCCGGY 1 cut(s) 1701
Cfr13I GGNCC 2 cut(s) 181, 395
CseI GACGC 1 cut(s) 182
Csp6I GTAC 8 cut(s) 106, 1128, 1189, 1263, 1323, 1404, 1464, 1812
CviAII CATG 4 cut(s) 123, 298, 1109, 1174
CviQI GTAC 8 cut(s) 106, 1128, 1189, 1263, 1323, 1404, 1464, 1812
DpnI GATC 5 cut(s) 164, 176, 606, 669, 699
DpnII GATC 5 cut(s) 162, 174, 604, 667, 697
EaeI YGGCCR 2 cut(s) 454, 861
Eam1104I CTCTTC 4 cut(s) 639, 1189, 1330, 1529
EarI CTCTTC 4 cut(s) 639, 1189, 1330, 1529
EciI GGCGGA 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 1038
Eco130I CCWWGG 2 cut(s) 122, 503
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 1040
Eco31I GGTCTC 1 cut(s) 1784
Eco47I GGWCC 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 1038
Eco57I CTGAAG 4 cut(s) 734, 1251, 1392, 1740
Eco72I CACGTG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 871
Eco91I GGTNACC 1 cut(s) 590
EcoICRI GAGCTC 1 cut(s) 1038
EcoO65I GGTNACC 1 cut(s) 590
EcoRII CCWGG 3 cut(s) 177, 234, 736
EcoT14I CCWWGG 2 cut(s) 122, 503
EcoT38I GRGCYC 1 cut(s) 1040
ErhI CCWWGG 2 cut(s) 122, 503
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 4 cut(s) 126, 301, 1112, 1177
FaqI GGGAC 3 cut(s) 100, 677, 1556
FatI CATG 4 cut(s) 122, 297, 1108, 1173
FblI GTMKAC 1 cut(s) 1772
Fnu4HI GCNGC 4 cut(s) 154, 240, 342, 457
FokI GGATG 9 cut(s) 638, 833, 854, 916, 980, 1078, 1313, 1454, 1778
FriOI GRGCYC 1 cut(s) 1040
Fsp4HI GCNGC 4 cut(s) 154, 240, 342, 457
FspBI CTAG 4 cut(s) 504, 702, 1266, 1840
FspI TGCGCA 2 cut(s) 213, 557
GlaI GCGC 3 cut(s) 213, 557, 911
GluI GCNGC 4 cut(s) 154, 240, 342, 457
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 5 cut(s) 182, 439, 456, 769, 863
HapII CCGG 2 cut(s) 314, 1702
HgaI GACGC 1 cut(s) 182
HhaI GCGC 3 cut(s) 214, 558, 912
Hin1II CATG 4 cut(s) 126, 301, 1112, 1177
Hin6I GCGC 3 cut(s) 212, 556, 910
HinP1I GCGC 3 cut(s) 212, 556, 910
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HpaII CCGG 2 cut(s) 314, 1702
HphI GGTGA 7 cut(s) 425, 584, 614, 918, 1032, 1316, 1457
Hpy166II GTNNAC 2 cut(s) 377, 1773
Hpy188III TCNNGA 3 cut(s) 608, 871, 1109
Hpy8I GTNNAC 2 cut(s) 377, 1773
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 6 cut(s) 8, 408, 413, 616, 1521, 1598
HpyCH4III ACNGT 2 cut(s) 1547, 1689
HpyCH4IV ACGT 1 cut(s) 754
HpyCH4V TGCA 2 cut(s) 344, 689
HpyF10VI GCNNNNNNNGC 6 cut(s) 332, 341, 350, 686, 1582, 1660
HpySE526I ACGT 1 cut(s) 754
Hsp92II CATG 4 cut(s) 126, 301, 1112, 1177
HspAI GCGC 3 cut(s) 212, 556, 910
KpnI GGTACC 1 cut(s) 1407
Kzo9I GATC 5 cut(s) 162, 174, 604, 667, 697
LguI GCTCTTC 1 cut(s) 1529
LmnI GCTCC 4 cut(s) 96, 203, 505, 1692
Lsp1109I GCAGC 2 cut(s) 251, 328
LweI GCATC 4 cut(s) 616, 1207, 1348, 1816
MaeI CTAG 4 cut(s) 504, 702, 1266, 1840
MaeII ACGT 1 cut(s) 754
MaeIII GTNAC 5 cut(s) 317, 590, 924, 1595, 1673
MalI GATC 5 cut(s) 164, 176, 606, 669, 699
MboI GATC 5 cut(s) 162, 174, 604, 667, 697
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 2 cut(s) 174, 697
MhlI GDGCHC 1 cut(s) 1040
MlsI TGGCCA 1 cut(s) 863
MluCI AATT 5 cut(s) 408, 741, 1222, 1363, 1555
MluNI TGGCCA 1 cut(s) 863
MlyI GAGTC 1 cut(s) 1778
Mox20I TGGCCA 1 cut(s) 863
MscI TGGCCA 1 cut(s) 863
MseI TTAA 2 cut(s) 1512, 1785
MslI CAYNNNNRTG 1 cut(s) 1671
Msp20I TGGCCA 1 cut(s) 863
MspI CCGG 2 cut(s) 314, 1702
MspR9I CCNGG 4 cut(s) 179, 236, 315, 738
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 4 cut(s) 1147, 1276, 1417, 1705
MvaI CCWGG 3 cut(s) 179, 236, 738
MwoI GCNNNNNNNGC 6 cut(s) 332, 341, 350, 686, 1582, 1660
NciI CCSGG 1 cut(s) 315
NcoI CCATGG 1 cut(s) 122
NdeII GATC 5 cut(s) 162, 174, 604, 667, 697
NlaIII CATG 4 cut(s) 126, 301, 1112, 1177
NlaIV GGNNCC 5 cut(s) 98, 128, 1405, 1586, 1664
NmeAIII GCCGAG 3 cut(s) 193, 352, 823
NmuCI GTSAC 4 cut(s) 590, 924, 1595, 1673
NsbI TGCGCA 2 cut(s) 213, 557
PaeR7I CTCGAG 1 cut(s) 871
PagI TCATGA 1 cut(s) 1108
PceI AGGCCT 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 1529
PctI GAATGC 4 cut(s) 1147, 1276, 1417, 1705
PkrI GCNGC 4 cut(s) 155, 241, 343, 458
PleI GAGTC 1 cut(s) 1777
PmaCI CACGTG 1 cut(s) 755
PmlI CACGTG 1 cut(s) 755
PpsI GAGTC 1 cut(s) 1777
Ppu21I YACGTR 1 cut(s) 755
PshBI ATTAAT 1 cut(s) 1512
Psp124BI GAGCTC 1 cut(s) 1040
Psp6I CCWGG 3 cut(s) 177, 234, 736
PspCI CACGTG 1 cut(s) 755
PspEI GGTNACC 1 cut(s) 590
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 3 cut(s) 177, 234, 736
PspN4I GGNNCC 5 cut(s) 98, 128, 1405, 1586, 1664
PspPI GGNCC 2 cut(s) 181, 395
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 2 cut(s) 174, 697
RsaI GTAC 8 cut(s) 107, 1129, 1190, 1264, 1324, 1405, 1465, 1813
RsaNI GTAC 8 cut(s) 106, 1128, 1189, 1263, 1323, 1404, 1464, 1812
RseI CAYNNNNRTG 1 cut(s) 1671
SacI GAGCTC 1 cut(s) 1040
SapI GCTCTTC 1 cut(s) 1529
SaqAI TTAA 2 cut(s) 1512, 1785
SatI GCNGC 4 cut(s) 154, 240, 342, 457
Sau3AI GATC 5 cut(s) 162, 174, 604, 667, 697
Sau96I GGNCC 2 cut(s) 181, 395
SchI GAGTC 1 cut(s) 1778
ScrFI CCNGG 4 cut(s) 179, 236, 315, 738
SduI GDGCHC 1 cut(s) 1040
SfaNI GCATC 4 cut(s) 616, 1207, 1348, 1816
SfcI CTRYAG 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 871
SinI GGWCC 1 cut(s) 395
SlaI CTCGAG 1 cut(s) 871
SmiMI CAYNNNNRTG 1 cut(s) 1671
SmlI CTYRAG 2 cut(s) 725, 871
SmoI CTYRAG 2 cut(s) 725, 871
Sse9I AATT 5 cut(s) 408, 741, 1222, 1363, 1555
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 4 cut(s) 154, 311, 457, 600
SspMI CTAG 4 cut(s) 504, 702, 1266, 1840
SstI GAGCTC 1 cut(s) 1040
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 4 cut(s) 177, 234, 313, 736
StyI CCWWGG 2 cut(s) 122, 503
TaaI ACNGT 2 cut(s) 1547, 1689
TaiI ACGT 1 cut(s) 757
TaqI TCGA 2 cut(s) 872, 1034
TaqII GACCGA 2 cut(s) 1156, 1808
TasI AATT 5 cut(s) 408, 741, 1222, 1363, 1555
TatI WGTACW 4 cut(s) 1127, 1188, 1322, 1463
TauI GCSGC 2 cut(s) 156, 459
Tru1I TTAA 2 cut(s) 1512, 1785
Tru9I TTAA 2 cut(s) 1512, 1785
TscAI CASTG 2 cut(s) 841, 1694
TseFI GTSAC 4 cut(s) 590, 924, 1595, 1673
TseI GCWGC 2 cut(s) 239, 341
Tsp45I GTSAC 4 cut(s) 590, 924, 1595, 1673
TspRI CASTG 2 cut(s) 841, 1694
VpaK11BI GGWCC 1 cut(s) 395
VspI ATTAAT 1 cut(s) 1512
XhoI CTCGAG 1 cut(s) 871
XmaJI CCTAGG 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 1772
XspI CTAG 4 cut(s) 504, 702, 1266, 1840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.