Rh6AG443400

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012293
Physical Location & Seq
Forward (+)
63020716 .. 63023787
3072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG443400.1

Sequence Viewer

Length: 1710 bp
ATGGAAGGCGAAGAAGGAGGAGGGATAAGGCTGAGCAAGAGGTTCTCAGACAAAGGAGGCGAAGTCGATAACAAAACCAAGTCAGGGACGGCGTGGAGCCACTCGTACCTGAACCAGAAGCCATGGCACCCTCTCTCTTACCCCAACCAACGCCGCAAGTGGATCGCCGAGCAGATCCAGGCCCAGCACCAGCGTCGCTCCGAAGAAGTCTCCCGCGAGTATGCGCAAGAGCAGGAGTTCTTTCGGCAGGCAGCTCTCATCTCCAAGAAAGATAAAGAAAAGATTGAGAATATGAAAGCTGTTAGCTTCATGTATGTTCGTCCGCCGGGTTACAATGCCGAGAGTGCCAAAGCTGCAGAGCTTGCCGATGAGAGTATGAGAGATGGTCAACAAACACAAACAGATGGCCCTTCTACTTCAATGCCTCCCAGTGGTGAAGAAGGCAAGAAGAAACCAAGGCCTAAAGATGTATTTGGCCGCAGTTTGCCTACTGAACAAGAGTTTGAAGTGTTGAAAAATGCTCCTAGGCTGGAGACTGGTGTTCCTACGAGGGCAAAACCATTTGGAGTTGAAGTGCGCAATGTAAAGTGTGTCAGGTGTGGAACATTTGGTCACCAAAGCGGTGATCGTGAATGTCCATTGAAGGATGTTATTATGCCTAATGAAGAGAGCCGACTGAAAAGGGACGATCCTTTGACTGCCATTCTTGCACACACAGATCCTAGTGAGCCTCTGAAGTGGGAACTCAAGCAAAAACCAGGAATTAGTCCTCCACGTGGAGGGTTTAGGCCAGATGACCCCAACCAGCAAATAGTTGCGGAGGAGGATATATTTGATGAGTATGGAGGATTTCTCAGTGGGGATGTCATCCCTGAGTTGCTGGCCAACTTCTCGAGCAAACCCAAGAAGAAGTCCAAAAAGAATACCAAGCGCAAAACAAAGCGGTCACCATCCATTAGTGGAGAAGACCAGTCATCTTCTGATGAGGATGACAAGAGGGGGTCAAAGAAGAAAGTATCCAAGCTAAAGAAAAAGAAGCGTAATCATTCTGAATCGAGCTCACCAGAGATTGATAGACATAAAGTAAAGAATAAATACGAGGAATCTTATTCATCCGAGGATTTGAATCATGAAAAACATCACAGAAGTTCAAAGAACAGACCGAAGCATTCTCAATCATTTGAAGATTCCGACATGGACAGGTGGCAGTACAGAAGAGACAAGAACAGAGACAGAGATGCTAATTCATCTGAAGATTCTGAGCCTGGTAAGAACCAAAGAGGTACCAGACTAAGATCTGAGGATTCGGATGGTGAAAAACATCATAGAAGTACAAAGAACAGACAGAGGCACTCTCATTCATATAAAGATTTTGAGATTAATAGGCATTTTAGAAGGGAGAAGAGCAGGGACAGTTGTGCCAATTCATTTGAAGATTCTGAGCCTGATAGGCACCTTCCAAGTGACCAGCGAAGACACCAGAGCAGACACCGACATTCTTATTTATCTGAAGATTCTGAGCCTGATAGGCACCATTCAAGTGACAAGAGAAGACAGTGGAGCAGACACCGGCATTCTTATTTGTCTGAAGATACTGACATAGGCAGGCAGAAAAGAAGTAAAAGAAGCAGGGATGAGCTTACCTATTCATTTAATGAGACCGATGATAAAAGGCATCGTACAAGTAGAAACAGTAGACACAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04330 map04330
Pfam Domains
Protein Families
Cir_N zf-CCHC_6

Protein Analysis

569

Amino Acids

66.3

Weight (kDa)

9.51

Isoelectric Point (pI)

70.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 42 - 77 5.9e-10 N-terminal domain of CBF1 interacting co-repressor CIR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19190
fragaria_vesca FvH4_2g37380 FvH4_3g03932
malus_domestica MD08G1001400.v1.1
prunus_persica Prupe.1G353400_v2.0.a1 Prupe.1G353400_v2.0.a1
pyrus_communis pycom08g00080
rosa_chinensis RchiOBHm_Chr6g0304321
rosa_laevigata RLG00000010990
rosa_multiflora Rmu_co8215432.1_g000001 Rmu_ssc0000218.1_g000039
rosa_roxburghii Rroxscaffold_7G00163840
rosa_rugosa Rorug06G0330100 Rorug06G0330200
rosa_samantha Rh6AG443400 Rh6BG459000 Rh6CG456200 Rh6DG442900
rosa_wichuraiana Rw6G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 225, 578
Acc65I GGTACC 1 cut(s) 1283
AccB1I GGYRCC 4 cut(s) 126, 1283, 1452, 1530
AccI GTMKAC 1 cut(s) 1696
AccII CGCG 1 cut(s) 216
AciI CCGC 7 cut(s) 154, 214, 323, 478, 621, 818, 943
AclWI GGATC 4 cut(s) 169, 170, 683, 713
AcoI YGGCCR 2 cut(s) 475, 882
AcuI CTGAAG 4 cut(s) 755, 1272, 1530, 1608
AcvI CACGTG 1 cut(s) 776
AfaI GTAC 5 cut(s) 107, 1211, 1285, 1333, 1681
AfiI CCNNNNNNNGG 4 cut(s) 84, 431, 776, 779
AjnI CCWGG 3 cut(s) 177, 757, 1264
AluBI AGCT 8 cut(s) 254, 299, 306, 353, 361, 1024, 1059, 1639
AluI AGCT 8 cut(s) 254, 299, 306, 353, 361, 1024, 1059, 1639
Alw21I GWGCWC 1 cut(s) 1061
Alw26I GTCTC 5 cut(s) 214, 527, 1212, 1224, 1652
AlwI GGATC 4 cut(s) 169, 170, 683, 713
Ama87I CYCGRG 1 cut(s) 892
AoxI GGCC 6 cut(s) 180, 406, 458, 475, 788, 882
ApeKI GCWGC 2 cut(s) 251, 353
AseI ATTAAT 1 cut(s) 1380
Asp718I GGTACC 1 cut(s) 1283
AspA2I CCTAGG 1 cut(s) 524
AspLEI GCGC 3 cut(s) 226, 579, 933
AspS9I GGNCC 2 cut(s) 181, 407
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 6 cut(s) 446, 605, 635, 939, 1053, 1325
AvaI CYCGRG 1 cut(s) 892
AvrII CCTAGG 1 cut(s) 524
BalI TGGCCA 1 cut(s) 884
BanI GGYRCC 4 cut(s) 126, 1283, 1452, 1530
BanII GRGCYC 1 cut(s) 1061
BbrPI CACGTG 1 cut(s) 776
BbsI GAAGAC 3 cut(s) 972, 1480, 1558
Bbv12I GWGCWC 1 cut(s) 1061
BbvI GCAGC 2 cut(s) 263, 340
BccI CCATC 4 cut(s) 377, 398, 958, 1304
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 4 cut(s) 145, 176, 179, 210
BciT130I CCWGG 3 cut(s) 179, 759, 1266
BciVI GTATCC 1 cut(s) 1027
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 5 cut(s) 214, 527, 1212, 1224, 1652
BfaI CTAG 3 cut(s) 525, 723, 1708
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 1027
BglI GCCNNNNNGGC 2 cut(s) 1450, 1528
BglII AGATCT 1 cut(s) 1295
BisI GCNGC 4 cut(s) 154, 252, 354, 478
BlnI CCTAGG 1 cut(s) 524
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 4 cut(s) 155, 253, 355, 479
Bme1390I CCNGG 4 cut(s) 179, 327, 759, 1266
BmeT110I CYCGRG 1 cut(s) 892
BmgT120I GGNCC 2 cut(s) 181, 407
BmiI GGNNCC 5 cut(s) 98, 128, 1285, 1454, 1532
BmrFI CCNGG 4 cut(s) 179, 327, 759, 1266
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 2 cut(s) 1228, 1684
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 3 cut(s) 972, 1480, 1558
BplI GAGNNNNNCTC 4 cut(s) 837, 869, 1339, 1371
BpmI CTGGAG 1 cut(s) 551
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 776
BsaBI GATNNNNATC 1 cut(s) 1125
BsaI GGTCTC 1 cut(s) 1652
BsaJI CCNNGG 4 cut(s) 122, 455, 524, 1116
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 558, 588
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 431, 776, 779
Bse118I RCCGGY 1 cut(s) 1569
Bse1I ACTGG 3 cut(s) 429, 541, 970
Bse3DI GCAATG 1 cut(s) 586
Bse8I GATNNNNATC 1 cut(s) 1125
BseBI CCWGG 3 cut(s) 179, 759, 1266
BseDI CCNNGG 4 cut(s) 122, 455, 524, 1116
BseGI GGATG 8 cut(s) 652, 867, 868, 950, 994, 1112, 1315, 1639
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 4 cut(s) 84, 431, 776, 779
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 8 cut(s) 23, 60, 864, 868, 1251, 1290, 1431, 1509
BseNI ACTGG 3 cut(s) 429, 541, 970
BseRI GAGGAG 2 cut(s) 33, 836
BseXI GCAGC 2 cut(s) 263, 340
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 6 cut(s) 182, 408, 460, 477, 790, 884
BshNI GGYRCC 4 cut(s) 126, 1283, 1452, 1530
BsiHKAI GWGCWC 1 cut(s) 1061
BsiHKCI CYCGRG 1 cut(s) 892
BsiSI CCGG 2 cut(s) 326, 1570
BslFI GGGAC 3 cut(s) 100, 698, 1424
BslI CCNNNNNNNGG 4 cut(s) 84, 431, 776, 779
BsmAI GTCTC 5 cut(s) 214, 527, 1212, 1224, 1652
BsmFI GGGAC 3 cut(s) 100, 698, 1424
BsmI GAATGC 2 cut(s) 1168, 1573
BsnI GGCC 6 cut(s) 182, 408, 460, 477, 790, 884
Bso31I GGTCTC 1 cut(s) 1652
BsoBI CYCGRG 1 cut(s) 892
Bsp1286I GDGCHC 1 cut(s) 1061
Bsp143I GATC 6 cut(s) 162, 174, 625, 688, 718, 1295
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 122
BspACI CCGC 7 cut(s) 154, 214, 323, 478, 621, 818, 943
BspANI GGCC 6 cut(s) 182, 408, 460, 477, 790, 884
BspCNI CTCAG 8 cut(s) 24, 59, 865, 867, 1252, 1291, 1432, 1510
BspFNI CGCG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 1129
BspLI GGNNCC 5 cut(s) 98, 128, 1285, 1454, 1532
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 4 cut(s) 169, 170, 683, 713
BspQI GCTCTTC 1 cut(s) 1397
BspT107I GGYRCC 4 cut(s) 126, 1283, 1452, 1530
BspTNI GGTCTC 1 cut(s) 1652
BsrDI GCAATG 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 1569
BsrI ACTGG 3 cut(s) 429, 541, 970
BssAI RCCGGY 1 cut(s) 1569
BssECI CCNNGG 4 cut(s) 122, 455, 524, 1116
BssMI GATC 6 cut(s) 162, 174, 625, 688, 718, 1295
BssT1I CCWWGG 3 cut(s) 122, 455, 524
Bst2UI CCWGG 3 cut(s) 179, 759, 1266
Bst4CI ACNGT 3 cut(s) 1415, 1557, 1694
Bst6I CTCTTC 3 cut(s) 660, 1210, 1397
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 776
BstC8I GCNNGC 4 cut(s) 249, 363, 882, 1607
BstDEI CTNAG 9 cut(s) 32, 46, 854, 873, 1260, 1292, 1299, 1440, 1518
BstDSI CCRYGG 1 cut(s) 122
BstEII GGTNACC 2 cut(s) 611, 945
BstF5I GGATG 8 cut(s) 652, 867, 868, 950, 994, 1112, 1315, 1639
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 3 cut(s) 226, 579, 933
BstKTI GATC 6 cut(s) 165, 177, 628, 691, 721, 1298
BstMAI GTCTC 5 cut(s) 214, 527, 1212, 1224, 1652
BstMBI GATC 6 cut(s) 162, 174, 625, 688, 718, 1295
BstMWI GCNNNNNNNGC 6 cut(s) 344, 353, 362, 707, 1450, 1528
BstNI CCWGG 3 cut(s) 179, 759, 1266
BstPI GGTNACC 2 cut(s) 611, 945
BstSCI CCNGG 4 cut(s) 177, 325, 757, 1264
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 263, 340
BstV2I GAAGAC 3 cut(s) 972, 1480, 1558
BstX2I RGATCY 3 cut(s) 174, 718, 1295
BstYI RGATCY 3 cut(s) 174, 718, 1295
BsuI GTATCC 1 cut(s) 1027
BsuRI GGCC 6 cut(s) 182, 408, 460, 477, 790, 884
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 8 cut(s) 652, 867, 868, 950, 994, 1112, 1315, 1639
BtsIMutI CAGTG 3 cut(s) 436, 862, 1562
Cac8I GCNNGC 4 cut(s) 249, 363, 882, 1607
CciI TCATGA 1 cut(s) 1129
CfoI GCGC 3 cut(s) 226, 579, 933
Cfr10I RCCGGY 1 cut(s) 1569
Cfr13I GGNCC 2 cut(s) 181, 407
CseI GACGC 1 cut(s) 182
Csp6I GTAC 5 cut(s) 106, 1210, 1284, 1332, 1680
CviAII CATG 4 cut(s) 123, 310, 1130, 1195
CviQI GTAC 5 cut(s) 106, 1210, 1284, 1332, 1680
DdeI CTNAG 9 cut(s) 32, 46, 854, 873, 1260, 1292, 1299, 1440, 1518
DpnI GATC 6 cut(s) 164, 176, 627, 690, 720, 1297
DpnII GATC 6 cut(s) 162, 174, 625, 688, 718, 1295
EaeI YGGCCR 2 cut(s) 475, 882
Eam1104I CTCTTC 3 cut(s) 660, 1210, 1397
EarI CTCTTC 3 cut(s) 660, 1210, 1397
EciI GGCGGA 1 cut(s) 312
Ecl136II GAGCTC 1 cut(s) 1059
Eco130I CCWWGG 3 cut(s) 122, 455, 524
Eco147I AGGCCT 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 1061
Eco31I GGTCTC 1 cut(s) 1652
Eco53kI GAGCTC 1 cut(s) 1059
Eco57I CTGAAG 4 cut(s) 755, 1272, 1530, 1608
Eco72I CACGTG 1 cut(s) 776
Eco88I CYCGRG 1 cut(s) 892
Eco91I GGTNACC 2 cut(s) 611, 945
EcoICRI GAGCTC 1 cut(s) 1059
EcoO65I GGTNACC 2 cut(s) 611, 945
EcoRII CCWGG 3 cut(s) 177, 757, 1264
EcoT14I CCWWGG 3 cut(s) 122, 455, 524
EcoT38I GRGCYC 1 cut(s) 1061
ErhI CCWWGG 3 cut(s) 122, 455, 524
FaeI CATG 4 cut(s) 126, 313, 1133, 1198
FaqI GGGAC 3 cut(s) 100, 698, 1424
FatI CATG 4 cut(s) 122, 309, 1129, 1194
FauI CCCGC 1 cut(s) 221
FblI GTMKAC 1 cut(s) 1696
Fnu4HI GCNGC 4 cut(s) 154, 252, 354, 478
FokI GGATG 8 cut(s) 659, 854, 875, 937, 1001, 1099, 1322, 1646
FriOI GRGCYC 1 cut(s) 1061
Fsp4HI GCNGC 4 cut(s) 154, 252, 354, 478
FspBI CTAG 3 cut(s) 525, 723, 1708
FspI TGCGCA 2 cut(s) 225, 578
GlaI GCGC 3 cut(s) 225, 578, 932
GluI GCNGC 4 cut(s) 154, 252, 354, 478
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 551
HaeIII GGCC 6 cut(s) 182, 408, 460, 477, 790, 884
HapII CCGG 2 cut(s) 326, 1570
HgaI GACGC 1 cut(s) 182
HhaI GCGC 3 cut(s) 226, 579, 933
Hin1II CATG 4 cut(s) 126, 313, 1133, 1198
Hin6I GCGC 3 cut(s) 224, 577, 931
HinP1I GCGC 3 cut(s) 224, 577, 931
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HinfI GANTC 8 cut(s) 1052, 1103, 1126, 1187, 1256, 1304, 1436, 1514
HpaII CCGG 2 cut(s) 326, 1570
HphI GGTGA 6 cut(s) 446, 605, 635, 939, 1053, 1325
Hpy166II GTNNAC 2 cut(s) 389, 1697
Hpy188III TCNNGA 3 cut(s) 629, 892, 1130
Hpy8I GTNNAC 2 cut(s) 389, 1697
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 6 cut(s) 8, 420, 434, 637, 1389, 1466
HpyCH4III ACNGT 3 cut(s) 1415, 1557, 1694
HpyCH4IV ACGT 1 cut(s) 775
HpyCH4V TGCA 2 cut(s) 356, 710
HpyF10VI GCNNNNNNNGC 6 cut(s) 344, 353, 362, 707, 1450, 1528
HpyF3I CTNAG 9 cut(s) 32, 46, 854, 873, 1260, 1292, 1299, 1440, 1518
HpySE526I ACGT 1 cut(s) 775
Hsp92II CATG 4 cut(s) 126, 313, 1133, 1198
HspAI GCGC 3 cut(s) 224, 577, 931
KpnI GGTACC 1 cut(s) 1287
Kzo9I GATC 6 cut(s) 162, 174, 625, 688, 718, 1295
LguI GCTCTTC 1 cut(s) 1397
LmnI GCTCC 4 cut(s) 96, 203, 526, 1560
Lsp1109I GCAGC 2 cut(s) 263, 340
LweI GCATC 2 cut(s) 1228, 1684
MaeI CTAG 3 cut(s) 525, 723, 1708
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 5 cut(s) 329, 611, 945, 1463, 1541
MalI GATC 6 cut(s) 164, 176, 627, 690, 720, 1297
MboI GATC 6 cut(s) 162, 174, 625, 688, 718, 1295
MflI RGATCY 3 cut(s) 174, 718, 1295
MhlI GDGCHC 1 cut(s) 1061
MlsI TGGCCA 1 cut(s) 884
MluCI AATT 3 cut(s) 762, 1243, 1423
MluNI TGGCCA 1 cut(s) 884
MmeI TCCRAC 1 cut(s) 1215
Mox20I TGGCCA 1 cut(s) 884
MscI TGGCCA 1 cut(s) 884
MseI TTAA 2 cut(s) 1380, 1653
MslI CAYNNNNRTG 1 cut(s) 1539
Msp20I TGGCCA 1 cut(s) 884
MspI CCGG 2 cut(s) 326, 1570
MspR9I CCNGG 4 cut(s) 179, 327, 759, 1266
Mva1269I GAATGC 2 cut(s) 1168, 1573
MvaI CCWGG 3 cut(s) 179, 759, 1266
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 6 cut(s) 344, 353, 362, 707, 1450, 1528
NciI CCSGG 1 cut(s) 327
NcoI CCATGG 1 cut(s) 122
NdeII GATC 6 cut(s) 162, 174, 625, 688, 718, 1295
NlaIII CATG 4 cut(s) 126, 313, 1133, 1198
NlaIV GGNNCC 5 cut(s) 98, 128, 1285, 1454, 1532
NmeAIII GCCGAG 2 cut(s) 193, 364
NmuCI GTSAC 4 cut(s) 611, 945, 1463, 1541
NsbI TGCGCA 2 cut(s) 225, 578
PaeR7I CTCGAG 1 cut(s) 892
PagI TCATGA 1 cut(s) 1129
PceI AGGCCT 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 1397
PctI GAATGC 2 cut(s) 1168, 1573
PfeI GAWTC 8 cut(s) 1052, 1103, 1126, 1187, 1256, 1304, 1436, 1514
PkrI GCNGC 4 cut(s) 155, 253, 355, 479
PmaCI CACGTG 1 cut(s) 776
PmlI CACGTG 1 cut(s) 776
Ppu21I YACGTR 1 cut(s) 776
PshBI ATTAAT 1 cut(s) 1380
Psp124BI GAGCTC 1 cut(s) 1061
Psp6I CCWGG 3 cut(s) 177, 757, 1264
PspCI CACGTG 1 cut(s) 776
PspEI GGTNACC 2 cut(s) 611, 945
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 3 cut(s) 177, 757, 1264
PspN4I GGNNCC 5 cut(s) 98, 128, 1285, 1454, 1532
PspPI GGNCC 2 cut(s) 181, 407
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 3 cut(s) 174, 718, 1295
RsaI GTAC 5 cut(s) 107, 1211, 1285, 1333, 1681
RsaNI GTAC 5 cut(s) 106, 1210, 1284, 1332, 1680
RseI CAYNNNNRTG 1 cut(s) 1539
SacI GAGCTC 1 cut(s) 1061
SapI GCTCTTC 1 cut(s) 1397
SaqAI TTAA 2 cut(s) 1380, 1653
SatI GCNGC 4 cut(s) 154, 252, 354, 478
Sau3AI GATC 6 cut(s) 162, 174, 625, 688, 718, 1295
Sau96I GGNCC 2 cut(s) 181, 407
ScrFI CCNGG 4 cut(s) 179, 327, 759, 1266
SduI GDGCHC 1 cut(s) 1061
SfaNI GCATC 2 cut(s) 1228, 1684
SfcI CTRYAG 1 cut(s) 354
Sfr274I CTCGAG 1 cut(s) 892
SlaI CTCGAG 1 cut(s) 892
SmiMI CAYNNNNRTG 1 cut(s) 1539
SmlI CTYRAG 2 cut(s) 746, 892
SmoI CTYRAG 2 cut(s) 746, 892
Sse9I AATT 3 cut(s) 762, 1243, 1423
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 7 cut(s) 154, 214, 323, 478, 621, 818, 943
SspMI CTAG 3 cut(s) 525, 723, 1708
SstI GAGCTC 1 cut(s) 1061
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 4 cut(s) 177, 325, 757, 1264
StyI CCWWGG 3 cut(s) 122, 455, 524
TaaI ACNGT 3 cut(s) 1415, 1557, 1694
TaiI ACGT 1 cut(s) 778
TaqI TCGA 3 cut(s) 66, 893, 1055
TaqII GACCGA 2 cut(s) 1177, 1676
TasI AATT 3 cut(s) 762, 1243, 1423
TatI WGTACW 2 cut(s) 1209, 1331
TauI GCSGC 2 cut(s) 156, 480
TfiI GAWTC 8 cut(s) 1052, 1103, 1126, 1187, 1256, 1304, 1436, 1514
Tru1I TTAA 2 cut(s) 1380, 1653
Tru9I TTAA 2 cut(s) 1380, 1653
TscAI CASTG 3 cut(s) 436, 862, 1562
TseFI GTSAC 4 cut(s) 611, 945, 1463, 1541
TseI GCWGC 2 cut(s) 251, 353
Tsp45I GTSAC 4 cut(s) 611, 945, 1463, 1541
TspDTI ATGAA 9 cut(s) 298, 308, 678, 1101, 1146, 1236, 1350, 1416, 1638
TspRI CASTG 3 cut(s) 436, 862, 1562
VspI ATTAAT 1 cut(s) 1380
XhoI CTCGAG 1 cut(s) 892
XmaJI CCTAGG 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 1696
XspI CTAG 3 cut(s) 525, 723, 1708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.