Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8215432.1

Orthogroup ID

OG0012293

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 732

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8215432.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

cctctgaagtgggaactcaagcaaaaaccaggaattagtcctccacgtggagggtttaggccagatgaccccaaccagcaaatagttgccgaggaggatatatttgatgagtatggaggatttctcagtggggatgtcatccctgagttgctggccaacttctcgagcaaacccaagaagaagtccaaaaagaagaccaagcgcaaaacaaagcagtcaccatccattagtggagaagaccggtcatcttctgaagaggatgacaagaggaggtcaaagaagaaagtatccaagctaaagaaaaagaagcgtaatcattctgaatcgagctcaccagagattgatagacataaagtaaagaataaagacgaggaatcttattcatccgaggatttgaatcatgaaaaacatcacagaagttcaaagaacagaccgaagcattct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04330 map04330

Pfam Domains

Protein Families

Cir_N zf-CCHC_6

Protein Analysis

148

Amino Acids

17.05

Weight (kDa)

9.82

Isoelectric Point (pI)

78.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19190
fragaria_vesca	FvH4_2g37380 FvH4_3g03932
malus_domestica	MD08G1001400.v1.1
prunus_persica	Prupe.1G353400_v2.0.a1 Prupe.1G353400_v2.0.a1
pyrus_communis	pycom08g00080
rosa_chinensis	RchiOBHm_Chr6g0304321
rosa_laevigata	RLG00000010990
rosa_multiflora	Rmu_co8215432.1_g000001 Rmu_ssc0000218.1_g000039
rosa_roxburghii	Rroxscaffold_7G00163840
rosa_rugosa	Rorug06G0330100 Rorug06G0330200
rosa_samantha	Rh6AG443400 Rh6BG459000 Rh6CG456200 Rh6DG442900
rosa_wichuraiana	Rw6G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	2 cut(s)	26, 273
AcvI	CACGTG	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	47, 50
AgeI	ACCGGT	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	397, 423
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	295, 330
AluI	AGCT	2 cut(s)	295, 330
Alw21I	GWGCWC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	2 cut(s)	59, 153
AsiGI	ACCGGT	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	210, 324
AvaI	CYCGRG	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	332
BbrPI	CACGTG	1 cut(s)	47
BbsI	GAAGAC	2 cut(s)	200, 243
Bbv12I	GWGCWC	1 cut(s)	332
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	30
BpiI	GAAGAC	2 cut(s)	200, 243
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BsaAI	YACGTR	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	90, 387
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 50
Bse118I	RCCGGY	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	90, 387
BseGI	GGATG	5 cut(s)	138, 139, 221, 265, 383
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	47, 50
BseMII	CTCAG	2 cut(s)	135, 139
BseRI	GAGGAG	2 cut(s)	107, 283
BshFI	GGCC	2 cut(s)	61, 155
BshTI	ACCGGT	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	47, 50
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	61, 155
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	332
BspANI	GGCC	2 cut(s)	61, 155
BspCNI	CTCAG	2 cut(s)	136, 138
BspHI	TCATGA	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	240
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	90, 387
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	125, 144
BstF5I	GGATG	5 cut(s)	138, 139, 221, 265, 383
BstHHI	GCGC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstV2I	GAAGAC	2 cut(s)	200, 243
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	61, 155
BtsCI	GGATG	5 cut(s)	138, 139, 221, 265, 383
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	240
CspAI	ACCGGT	1 cut(s)	240
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	4 cut(s)	61, 155, 295, 330
CviKI_1	RGCY	4 cut(s)	61, 155, 295, 330
DdeI	CTNAG	2 cut(s)	125, 144
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	26, 273
Eco72I	CACGTG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	1 cut(s)	404
FaiI	YATR	4 cut(s)	101, 114, 351, 402
FatI	CATG	1 cut(s)	400
FokI	GGATG	5 cut(s)	125, 146, 208, 272, 370
FriOI	GRGCYC	1 cut(s)	332
GlaI	GCGC	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	61, 155
HapII	CCGG	1 cut(s)	241
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	323, 374, 397
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	2 cut(s)	210, 324
Hpy188I	TCNGA	4 cut(s)	6, 253, 322, 388
Hpy188III	TCNNGA	2 cut(s)	163, 401
HpyCH4IV	ACGT	1 cut(s)	46
HpyF3I	CTNAG	2 cut(s)	125, 144
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	1 cut(s)	202
LpnPI	CCDG	8 cut(s)	15, 42, 75, 89, 137, 156, 254, 348
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	216
MboII	GAAGA	6 cut(s)	190, 205, 240, 248, 266, 292
MhlI	GDGCHC	1 cut(s)	332
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	1 cut(s)	33
MluNI	TGGCCA	1 cut(s)	155
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	30
NlaIII	CATG	1 cut(s)	404
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	163
PagI	TCATGA	1 cut(s)	400
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	3 cut(s)	323, 374, 397
PinAI	ACCGGT	1 cut(s)	240
PmaCI	CACGTG	1 cut(s)	47
PmlI	CACGTG	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	28
PspCI	CACGTG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	4 cut(s)	49, 275, 297, 332
Sfr274I	CTCGAG	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	17, 163
SmoI	CTYRAG	2 cut(s)	17, 163
Sse9I	AATT	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	28
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	164, 326
TasI	AATT	1 cut(s)	33
TfiI	GAWTC	3 cut(s)	323, 374, 397
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	372, 417
TspRI	CASTG	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.