Rh6BG459000

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012293
Physical Location & Seq
Reverse (-)
67036034 .. 67039427
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG459000.1

Sequence Viewer

Length: 2004 bp
ATGGAGGGCGAAGAAGGAGGAGGGATAAGGCTGAGCAAGAGGTTCTCAGACAAAGGAGGCGAAGTCGATAACAAAACCAAGTCAGGCACAGCGTGGAGCCACTCGTACCTGAACCAGAAGCCATGGCACCCTCTCTCTTACCCCAACCAACGCCGCAAGTGGATCGCCGAGCAGATCCAGGCCCAGCACCAGCGTCGCTCCGAAGAAGTCTCCCGCGAGTACGCGCAAGAGCAGGAGTTCTTTCGCCAGGCAGCTCTCATCTCCAAGAAAGATAAAGAAAAGATTGAGGCGATGAAAGCTGTTAGCTTCATGTATGTTCGTCCGCCGGGTTACAATGCCGAGAGTGCCAAAGCTGCAGAGCTTGCCGATGAGAGTATGAGAGATGGTCAACAAACACAAACAGATGGTCCTTCTACTTCAATGCCTCCCAGTGCTGAAGAAGGCAAGAAGAAACCAAGGCCTAAAGATGTATTTGGCCGCAGTTTGCCTACTGAACAAGAGTTTGAAGTGTTGAAAAATGCTCCTAGGCTGGAGACGGGTGTTCCTACGAGGGCAAAACCATTTGGAGTTGAAGTGCGCAATGTAAAGTGTGTCAGGTGTGGAACATTTGGTCACCAAAGCGGTGATCGTGAATGTCCATTGAAGGATGTTATTATGCCTAATGAAGAGAGCCGACTGAAAAGGGACGATCCTTTGACTGCCATTCTTGCACACACAGATCCTAGTGAGCCTCTGAAGTGGGAACTCAAGCAAAAACCAGGAATTAGTCCTCCACGTGGAGGGTTTAAGCCAGATGACCCCAACCAGCAAATAGTTGCCGAGGAGGATATATTTGATGAGTATGGAGGATTTCTCAGTGGGGATGTCATCCCTGAGTTGCTGGCCAACTTCTCGAGCAAACCCAAGAAGAAGTCAAAAAAGAAGACCAAGCGCAAAACAAAGCAGTCACCATCCATTAGTGGAGAAGACCGGTCATCTTCTGATGAGGATGACAAGAGGGGGTCAAAGAAGAAAGTATCCAAGCTAAAGAAAAAGAAGCGTAATCATTCTGAATCGAGCTCACCAGAGATTGATAGACATGAAGTAAAGAATAAAGACAAGGAATCTTATTCATCCGAGGATTTGAATCATGAAAAGCATCACAGAAGTACAAGGAACAGACCGAAGCATTCTCATTCATTTGAAGATTCTGACATGGACAGGTGGCAGTACAGAAGAGACAAGAACAGAGACAGAGATGCTAATTCATCTGAAGATTCTGAGCCTGATAAGAACCAAAGAGGTACCAGACACAAGCATTCTTACTCATCTGAGGATTTGGATGGTGAAAAACATCATAGAAGTACAAAGAACAGAAGAGACAAGAACAGAGTCAGAGATGCTAATTCATCTGAAGATTCTGAGCCTGATAAGAACCAAAGAGGTACCAGACACAAGCATTCTTACTCATCTGAGGATTTGGATGGTGAAAAACATCATAGAAGTACAAAGAACAGAAGAGACAAGAACAGAGACAGAAATGCTAATTCATCTGAAGATTCTGAGCCTGATAAGAACCAAAGAGGTACCAGACACAAGCTTTCTTACTCATCTGAGGATTCGGATGGAGAAAAACATCATAGAAGTACAAAGAACAGACAGAGGCACTCTCATTCATATAAAGATTTTGGGATTAATAGGCATTTTAGAAGGGAGAAGAGCAGAGACAGTTGTGCCAATTCATTTGAAGATTCTGAGCCTGATAGGCACCTTCCAAGTGACAAGCGAAGACACCAGAGCAGACACCGACATTCTTATTCATCCGAAGATTCTGAGCCTGATAGGTGCCATTCAAGTGACAAGAGAAGGCAGCGGAGCAGACGCCGGCATTCTTATTCGTCTGAAGATTCTGACATAGGCAGGCAGAAAAGAAGTAAAAGAAGCAGGGATGAGCCTACCTATTCATTTAATGAGACCAATGATAAAAGGCATCGTACAAGTAGAAACGGTAGACACAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04330 map04330
Pfam Domains
Protein Families
Cir_N zf-CCHC_6

Protein Analysis

667

Amino Acids

77.64

Weight (kDa)

9.6

Isoelectric Point (pI)

70.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 42 - 77 7.2e-10 N-terminal domain of CBF1 interacting co-repressor CIR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19190
fragaria_vesca FvH4_2g37380 FvH4_3g03932
malus_domestica MD08G1001400.v1.1
prunus_persica Prupe.1G353400_v2.0.a1 Prupe.1G353400_v2.0.a1
pyrus_communis pycom08g00080
rosa_chinensis RchiOBHm_Chr6g0304321
rosa_laevigata RLG00000010990
rosa_multiflora Rmu_co8215432.1_g000001 Rmu_ssc0000218.1_g000039
rosa_roxburghii Rroxscaffold_7G00163840
rosa_rugosa Rorug06G0330100 Rorug06G0330200
rosa_samantha Rh6AG443400 Rh6BG459000 Rh6CG456200 Rh6DG442900
rosa_wichuraiana Rw6G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 578
Acc65I GGTACC 3 cut(s) 1283, 1424, 1565
AccB1I GGYRCC 6 cut(s) 126, 1283, 1424, 1565, 1746, 1824
AccI GTMKAC 1 cut(s) 1990
AccII CGCG 2 cut(s) 216, 224
AciI CCGC 6 cut(s) 154, 214, 323, 478, 621, 1852
AclWI GGATC 4 cut(s) 169, 170, 683, 713
AcoI YGGCCR 2 cut(s) 475, 882
AcuI CTGAAG 6 cut(s) 456, 755, 1272, 1413, 1554, 1902
AcvI CACGTG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 1861
AdeI CACNNNGTG 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 776, 779
AgeI ACCGGT 1 cut(s) 969
AgsI TTSAA 9 cut(s) 420, 506, 514, 572, 643, 1126, 1184, 1727, 1833
AjnI CCWGG 3 cut(s) 177, 246, 757
AluBI AGCT 8 cut(s) 254, 299, 306, 353, 361, 1024, 1059, 1579
AluI AGCT 8 cut(s) 254, 299, 306, 353, 361, 1024, 1059, 1579
Alw21I GWGCWC 1 cut(s) 1061
Alw26I GTCTC 9 cut(s) 214, 527, 1212, 1224, 1353, 1494, 1506, 1698, 1946
AlwI GGATC 4 cut(s) 169, 170, 683, 713
Ama87I CYCGRG 1 cut(s) 892
AoxI GGCC 4 cut(s) 180, 458, 475, 882
ApeKI GCWGC 3 cut(s) 251, 353, 1849
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
AseI ATTAAT 1 cut(s) 1674
AsiGI ACCGGT 1 cut(s) 969
Asp718I GGTACC 3 cut(s) 1283, 1424, 1565
AspA2I CCTAGG 1 cut(s) 524
AspLEI GCGC 3 cut(s) 226, 579, 933
AspS9I GGNCC 2 cut(s) 181, 407
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 6 cut(s) 605, 635, 939, 1053, 1337, 1478
AvaI CYCGRG 1 cut(s) 892
AvaII GGWCC 1 cut(s) 407
AvrII CCTAGG 1 cut(s) 524
BalI TGGCCA 1 cut(s) 884
BanI GGYRCC 6 cut(s) 126, 1283, 1424, 1565, 1746, 1824
BanII GRGCYC 1 cut(s) 1061
BbrPI CACGTG 1 cut(s) 776
BbsI GAAGAC 3 cut(s) 929, 972, 1774
Bbv12I GWGCWC 1 cut(s) 1061
BbvI GCAGC 3 cut(s) 263, 340, 1861
BccI CCATC 6 cut(s) 377, 398, 958, 1316, 1457, 1598
BcgI CGANNNNNNTGC 4 cut(s) 145, 176, 179, 210
BciT130I CCWGG 3 cut(s) 179, 248, 759
BciVI GTATCC 1 cut(s) 1027
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 9 cut(s) 214, 527, 1212, 1224, 1353, 1494, 1506, 1698, 1946
BfaI CTAG 3 cut(s) 525, 723, 2002
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 1027
BglI GCCNNNNNGGC 1 cut(s) 1744
BisI GCNGC 5 cut(s) 154, 252, 354, 478, 1850
BlnI CCTAGG 1 cut(s) 524
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 5 cut(s) 155, 253, 355, 479, 1851
Bme1390I CCNGG 4 cut(s) 179, 248, 327, 759
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 892
BmgT120I GGNCC 2 cut(s) 181, 407
BmiI GGNNCC 7 cut(s) 98, 128, 1285, 1426, 1567, 1748, 1826
BmrFI CCNGG 4 cut(s) 179, 248, 327, 759
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 4 cut(s) 1147, 1228, 1369, 1978
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 3 cut(s) 929, 972, 1774
BplI GAGNNNNNCTC 4 cut(s) 837, 869, 1633, 1665
BpmI CTGGAG 1 cut(s) 551
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 776
BsaBI GATNNNNATC 1 cut(s) 1125
BsaHI GRCGYC 1 cut(s) 1861
BsaI GGTCTC 1 cut(s) 1946
BsaJI CCNNGG 5 cut(s) 122, 455, 524, 819, 1116
BsaWI WCCGGW 1 cut(s) 969
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 558, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 776, 779
Bse118I RCCGGY 2 cut(s) 969, 1863
Bse1I ACTGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 586
Bse8I GATNNNNATC 1 cut(s) 1125
BseBI CCWGG 3 cut(s) 179, 248, 759
BseDI CCNNGG 5 cut(s) 122, 455, 524, 819, 1116
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 2 cut(s) 776, 779
BseMI GCAATG 1 cut(s) 586
BseNI ACTGG 1 cut(s) 429
BseRI GAGGAG 2 cut(s) 33, 836
BseXI GCAGC 3 cut(s) 263, 340, 1861
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 2 cut(s) 216, 224
BshFI GGCC 4 cut(s) 182, 460, 477, 884
BshNI GGYRCC 6 cut(s) 126, 1283, 1424, 1565, 1746, 1824
BshTI ACCGGT 1 cut(s) 969
BsiHKAI GWGCWC 1 cut(s) 1061
BsiHKCI CYCGRG 1 cut(s) 892
BsiSI CCGG 3 cut(s) 326, 970, 1864
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 2 cut(s) 776, 779
BsmAI GTCTC 9 cut(s) 214, 527, 1212, 1224, 1353, 1494, 1506, 1698, 1946
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 698
BsmI GAATGC 4 cut(s) 1168, 1297, 1438, 1867
BsnI GGCC 4 cut(s) 182, 460, 477, 884
Bso31I GGTCTC 1 cut(s) 1946
BsoBI CYCGRG 1 cut(s) 892
Bsp1286I GDGCHC 1 cut(s) 1061
Bsp143I GATC 5 cut(s) 162, 174, 625, 688, 718
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 122
BspACI CCGC 6 cut(s) 154, 214, 323, 478, 621, 1852
BspANI GGCC 4 cut(s) 182, 460, 477, 884
BspFNI CGCG 2 cut(s) 216, 224
BspHI TCATGA 1 cut(s) 1129
BspLI GGNNCC 7 cut(s) 98, 128, 1285, 1426, 1567, 1748, 1826
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 4 cut(s) 169, 170, 683, 713
BspQI GCTCTTC 1 cut(s) 1691
BspT107I GGYRCC 6 cut(s) 126, 1283, 1424, 1565, 1746, 1824
BspTNI GGTCTC 1 cut(s) 1946
BsrDI GCAATG 1 cut(s) 586
BsrFI RCCGGY 2 cut(s) 969, 1863
BsrI ACTGG 1 cut(s) 429
BssAI RCCGGY 2 cut(s) 969, 1863
BssECI CCNNGG 5 cut(s) 122, 455, 524, 819, 1116
BssMI GATC 5 cut(s) 162, 174, 625, 688, 718
BssNI GRCGYC 1 cut(s) 1861
BssT1I CCWWGG 3 cut(s) 122, 455, 524
Bst2UI CCWGG 3 cut(s) 179, 248, 759
Bst4CI ACNGT 2 cut(s) 1709, 1988
Bst6I CTCTTC 5 cut(s) 660, 1210, 1351, 1492, 1691
BstACI GRCGYC 1 cut(s) 1861
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 776
BstC8I GCNNGC 4 cut(s) 363, 882, 1865, 1901
BstDSI CCRYGG 1 cut(s) 122
BstEII GGTNACC 1 cut(s) 611
BstFNI CGCG 2 cut(s) 216, 224
BstHHI GCGC 3 cut(s) 226, 579, 933
BstKTI GATC 5 cut(s) 165, 177, 628, 691, 721
BstMAI GTCTC 9 cut(s) 214, 527, 1212, 1224, 1353, 1494, 1506, 1698, 1946
BstMBI GATC 5 cut(s) 162, 174, 625, 688, 718
BstMWI GCNNNNNNNGC 6 cut(s) 296, 344, 353, 362, 707, 1744
BstNI CCWGG 3 cut(s) 179, 248, 759
BstPI GGTNACC 1 cut(s) 611
BstSCI CCNGG 4 cut(s) 177, 246, 325, 757
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 2 cut(s) 216, 224
BstV1I GCAGC 3 cut(s) 263, 340, 1861
BstV2I GAAGAC 3 cut(s) 929, 972, 1774
BstX2I RGATCY 2 cut(s) 174, 718
BstYI RGATCY 2 cut(s) 174, 718
BsuI GTATCC 1 cut(s) 1027
BsuRI GGCC 4 cut(s) 182, 460, 477, 884
BtgI CCRYGG 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 436, 862
Cac8I GCNNGC 4 cut(s) 363, 882, 1865, 1901
CciI TCATGA 1 cut(s) 1129
CfoI GCGC 3 cut(s) 226, 579, 933
Cfr10I RCCGGY 2 cut(s) 969, 1863
Cfr13I GGNCC 2 cut(s) 181, 407
CseI GACGC 2 cut(s) 182, 1869
CspAI ACCGGT 1 cut(s) 969
CviAII CATG 5 cut(s) 123, 310, 1079, 1130, 1195
DpnI GATC 5 cut(s) 164, 176, 627, 690, 720
DpnII GATC 5 cut(s) 162, 174, 625, 688, 718
DraIII CACNNNGTG 1 cut(s) 93
EaeI YGGCCR 2 cut(s) 475, 882
Eam1104I CTCTTC 5 cut(s) 660, 1210, 1351, 1492, 1691
EarI CTCTTC 5 cut(s) 660, 1210, 1351, 1492, 1691
EciI GGCGGA 1 cut(s) 312
Ecl136II GAGCTC 1 cut(s) 1059
Eco130I CCWWGG 3 cut(s) 122, 455, 524
Eco147I AGGCCT 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 1061
Eco31I GGTCTC 1 cut(s) 1946
Eco47I GGWCC 1 cut(s) 407
Eco53kI GAGCTC 1 cut(s) 1059
Eco57I CTGAAG 6 cut(s) 456, 755, 1272, 1413, 1554, 1902
Eco72I CACGTG 1 cut(s) 776
Eco88I CYCGRG 1 cut(s) 892
Eco91I GGTNACC 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 1059
EcoO65I GGTNACC 1 cut(s) 611
EcoRII CCWGG 3 cut(s) 177, 246, 757
EcoT14I CCWWGG 3 cut(s) 122, 455, 524
EcoT38I GRGCYC 1 cut(s) 1061
ErhI CCWWGG 3 cut(s) 122, 455, 524
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 5 cut(s) 126, 313, 1082, 1133, 1198
FaqI GGGAC 1 cut(s) 698
FatI CATG 5 cut(s) 122, 309, 1078, 1129, 1194
FauI CCCGC 1 cut(s) 221
FblI GTMKAC 1 cut(s) 1990
Fnu4HI GCNGC 5 cut(s) 154, 252, 354, 478, 1850
FriOI GRGCYC 1 cut(s) 1061
Fsp4HI GCNGC 5 cut(s) 154, 252, 354, 478, 1850
FspBI CTAG 3 cut(s) 525, 723, 2002
FspI TGCGCA 1 cut(s) 578
GlaI GCGC 3 cut(s) 225, 578, 932
GluI GCNGC 5 cut(s) 154, 252, 354, 478, 1850
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 551
HaeIII GGCC 4 cut(s) 182, 460, 477, 884
HapII CCGG 3 cut(s) 326, 970, 1864
HgaI GACGC 2 cut(s) 182, 1869
HhaI GCGC 3 cut(s) 226, 579, 933
Hin1I GRCGYC 1 cut(s) 1861
Hin1II CATG 5 cut(s) 126, 313, 1082, 1133, 1198
Hin6I GCGC 3 cut(s) 224, 577, 931
HinP1I GCGC 3 cut(s) 224, 577, 931
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 1577
HpaII CCGG 3 cut(s) 326, 970, 1864
HphI GGTGA 6 cut(s) 605, 635, 939, 1053, 1337, 1478
Hpy166II GTNNAC 2 cut(s) 389, 1991
Hpy188III TCNNGA 3 cut(s) 629, 892, 1130
Hpy8I GTNNAC 2 cut(s) 389, 1991
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 7 cut(s) 8, 420, 434, 637, 1683, 1760, 1839
HpyCH4III ACNGT 2 cut(s) 1709, 1988
HpyCH4IV ACGT 1 cut(s) 775
HpyCH4V TGCA 2 cut(s) 356, 710
HpyF10VI GCNNNNNNNGC 6 cut(s) 296, 344, 353, 362, 707, 1744
HpySE526I ACGT 1 cut(s) 775
Hsp92I GRCGYC 1 cut(s) 1861
Hsp92II CATG 5 cut(s) 126, 313, 1082, 1133, 1198
HspAI GCGC 3 cut(s) 224, 577, 931
KpnI GGTACC 3 cut(s) 1287, 1428, 1569
KroI GCCGGC 1 cut(s) 1863
KroNI GCCGGC 1 cut(s) 1865
Kzo9I GATC 5 cut(s) 162, 174, 625, 688, 718
LguI GCTCTTC 1 cut(s) 1691
LmnI GCTCC 4 cut(s) 96, 203, 526, 1854
Lsp1109I GCAGC 3 cut(s) 263, 340, 1861
LweI GCATC 4 cut(s) 1147, 1228, 1369, 1978
MaeI CTAG 3 cut(s) 525, 723, 2002
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 5 cut(s) 329, 611, 945, 1757, 1835
MalI GATC 5 cut(s) 164, 176, 627, 690, 720
MboI GATC 5 cut(s) 162, 174, 625, 688, 718
MflI RGATCY 2 cut(s) 174, 718
MhlI GDGCHC 1 cut(s) 1061
MlsI TGGCCA 1 cut(s) 884
MluCI AATT 5 cut(s) 762, 1243, 1384, 1525, 1717
MluNI TGGCCA 1 cut(s) 884
MlyI GAGTC 1 cut(s) 1380
Mox20I TGGCCA 1 cut(s) 884
MroNI GCCGGC 1 cut(s) 1863
MscI TGGCCA 1 cut(s) 884
MseI TTAA 3 cut(s) 786, 1674, 1947
MslI CAYNNNNRTG 1 cut(s) 1833
Msp20I TGGCCA 1 cut(s) 884
MspA1I CMGCKG 1 cut(s) 1852
MspI CCGG 3 cut(s) 326, 970, 1864
MspR9I CCNGG 4 cut(s) 179, 248, 327, 759
Mva1269I GAATGC 4 cut(s) 1168, 1297, 1438, 1867
MvaI CCWGG 3 cut(s) 179, 248, 759
MvnI CGCG 2 cut(s) 216, 224
MwoI GCNNNNNNNGC 6 cut(s) 296, 344, 353, 362, 707, 1744
NaeI GCCGGC 1 cut(s) 1865
NciI CCSGG 1 cut(s) 327
NcoI CCATGG 1 cut(s) 122
NdeII GATC 5 cut(s) 162, 174, 625, 688, 718
NgoMIV GCCGGC 1 cut(s) 1863
NlaIII CATG 5 cut(s) 126, 313, 1082, 1133, 1198
NlaIV GGNNCC 7 cut(s) 98, 128, 1285, 1426, 1567, 1748, 1826
NmeAIII GCCGAG 3 cut(s) 193, 364, 844
NmuCI GTSAC 4 cut(s) 611, 945, 1757, 1835
NsbI TGCGCA 1 cut(s) 578
PaeR7I CTCGAG 1 cut(s) 892
PagI TCATGA 1 cut(s) 1129
PceI AGGCCT 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 1691
PctI GAATGC 4 cut(s) 1168, 1297, 1438, 1867
PdiI GCCGGC 1 cut(s) 1865
PinAI ACCGGT 1 cut(s) 969
PkrI GCNGC 5 cut(s) 155, 253, 355, 479, 1851
PleI GAGTC 1 cut(s) 1379
PmaCI CACGTG 1 cut(s) 776
PmlI CACGTG 1 cut(s) 776
PpsI GAGTC 1 cut(s) 1379
Ppu21I YACGTR 1 cut(s) 776
PshBI ATTAAT 1 cut(s) 1674
Psp124BI GAGCTC 1 cut(s) 1061
Psp6I CCWGG 3 cut(s) 177, 246, 757
PspCI CACGTG 1 cut(s) 776
PspEI GGTNACC 1 cut(s) 611
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 3 cut(s) 177, 246, 757
PspN4I GGNNCC 7 cut(s) 98, 128, 1285, 1426, 1567, 1748, 1826
PspPI GGNCC 2 cut(s) 181, 407
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 174, 718
RseI CAYNNNNRTG 1 cut(s) 1833
SacI GAGCTC 1 cut(s) 1061
SapI GCTCTTC 1 cut(s) 1691
SaqAI TTAA 3 cut(s) 786, 1674, 1947
SatI GCNGC 5 cut(s) 154, 252, 354, 478, 1850
Sau3AI GATC 5 cut(s) 162, 174, 625, 688, 718
Sau96I GGNCC 2 cut(s) 181, 407
SchI GAGTC 1 cut(s) 1380
ScrFI CCNGG 4 cut(s) 179, 248, 327, 759
SduI GDGCHC 1 cut(s) 1061
SfaNI GCATC 4 cut(s) 1147, 1228, 1369, 1978
SfcI CTRYAG 1 cut(s) 354
Sfr274I CTCGAG 1 cut(s) 892
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 892
SmiMI CAYNNNNRTG 1 cut(s) 1833
SmlI CTYRAG 2 cut(s) 746, 892
SmoI CTYRAG 2 cut(s) 746, 892
Sse9I AATT 5 cut(s) 762, 1243, 1384, 1525, 1717
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 6 cut(s) 154, 214, 323, 478, 621, 1852
SspMI CTAG 3 cut(s) 525, 723, 2002
SstI GAGCTC 1 cut(s) 1061
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 4 cut(s) 177, 246, 325, 757
StyI CCWWGG 3 cut(s) 122, 455, 524
TaaI ACNGT 2 cut(s) 1709, 1988
TaiI ACGT 1 cut(s) 778
TaqI TCGA 3 cut(s) 66, 893, 1055
TaqII GACCGA 1 cut(s) 1177
TasI AATT 5 cut(s) 762, 1243, 1384, 1525, 1717
TatI WGTACW 5 cut(s) 1148, 1209, 1343, 1484, 1625
TauI GCSGC 2 cut(s) 156, 480
Tru1I TTAA 3 cut(s) 786, 1674, 1947
Tru9I TTAA 3 cut(s) 786, 1674, 1947
TscAI CASTG 2 cut(s) 436, 862
TseFI GTSAC 4 cut(s) 611, 945, 1757, 1835
TseI GCWGC 3 cut(s) 251, 353, 1849
Tsp45I GTSAC 4 cut(s) 611, 945, 1757, 1835
TspRI CASTG 2 cut(s) 436, 862
VpaK11BI GGWCC 1 cut(s) 407
VspI ATTAAT 1 cut(s) 1674
XhoI CTCGAG 1 cut(s) 892
XmaJI CCTAGG 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 1990
XspI CTAG 3 cut(s) 525, 723, 2002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.