MD08G1001400.v1.1

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012293
Physical Location & Seq
Forward (+)
140788 .. 144980
4193 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1001400.v1.1.491

Sequence Viewer

Length: 1704 bp
ATGGAAGGTGAAGAGGAAGGAGGGATAAGGCTGAGCAAGAGATTTTCGGACAAAGGAGGAGAAGGAGGAGGAGGTGGGGAGGTTGATTACAAGAATAAGTCAGGCACGGCGTGGAGCCACTCGTACCTGAATCAGAAGCCATGGCACCCTCTCTCTTACCCCAATCAGCGCCGTAAGTGGATCGCAGAGCAGATCCAGGCCCAGCGTCAGCGTCGTACCGAGGAGGTCTCCCGCGAGTATGCCCAAGAGCAGGAATTCTTTCGGCAGGCCGCTCTCGTCTCCAAGAAAGACAAGGAAAAGATTGAGACTATGAAAGCTGTTAGCTTTATGTATGTTCGACCGCCTGGTTACAATGCCGAAAGTGCAAAAGCTGCAGAGATTGCTGATGAGAGTGCAAGGGAGCACCCACAAACACAAGCTCTAACAGATGCTACTGCTACTTCCACTTCAAGCCAACGCCCACCCGAGTCTTTGCCTCCTACCGCTGAACATGCCAAGAAATCAAGGCCTAAAGATGTGTTTGGCCGTCCTTTACCAACAGAACAAGAATTTGAAGTTTTGAAAAATGCTCCAAGGCTGGAGACTGGTGTTCCTACGAGGGCAAAACCATTTGGAGTTGAAGTGCGCAATGTAAAGTGCGTAAGGTGTGGAACTTTTGGTCACCAAAGTGGCGACCGTGAATGTCCGTTGAAGGATGCCATAATGCCCAATGAAGAGAGCCGTTTGAAAAGGGACGACCCTTTGACTGCTATTCTTGCCCACACAGATCCTAGCGAGCCTTTAAAGTGGGAACTCAAGCAAAAACCAGGAATTAGTCCTCCACGTGGAGGGTTTAAACCAGATGATCCCAACCAACAAATAGTTGCTGAGGACACCATATTTGATGAATATGGAGGGTTTCTCAGCGGGAATGCCATCCCTGAGTTGCTGACCAACTTCTCAAGCAAACCCAGGATCAAGTCCACAAAGAAGAACAAGCACAAAAAAAAGCAGTCATCACCAGTTAGTGGGGAAGACGGGTTTTCATCTTCTTATGAGGATGATAAGAAGTCAAAGAAGAAGATGAGCAAGGTAAATAAGAAGAAGCACAGCCATTCTGAATCAAGCTCATCAGAGATTCTGGAATTTGATAGGCATAAAGTAAAGCGTAGAGTCAAGCATTGTTATTCATGTGAGAAATCAAATCCTGAAAAGCATCACAAAAGTACAAAGAACAGAAAGAAGCATTCTGATTCATCTGAAAATTCTGAGATTTATAGGCATCGCAGCAGAAGGGACAACAGCAGAGACAGGTGTACTGTTTCATCTGAAGATTCTGAGGCTCTGAAGCACCATAGAGATGTCCAGCGCAGACGCAAGCACTCTTTTTCATTTGAGGAATCGATTCATGAAAAACATCGTAGAAGTAGAATGATCAGACAGAAGCATTCTCATTCATATGAAGATTCCAAGATTGATAGGCATTGCGGAAGGGACGTGAGCAGAGACAGGTTAAATAATTCATCTGAAGGCTCTGAGTCTGATAGACACCTTAAAAGTGGCAAAAGCAGACACCGGCATTCTAATTCATCTGAAGATTCTGACACAGAGAAGCAAAATAGACATAGAAAGAGCAGGGATAGGCACTCTTACTCATATGGTGAAACCGAAAATGAGAAGCATCATAAAAGTACTAACAGAAAACACAAGCGCTTTTGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04330 map04330
Pfam Domains
Protein Families
Cir_N zf-CCHC_6

Protein Analysis

568

Amino Acids

65.31

Weight (kDa)

9.62

Isoelectric Point (pI)

62.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 48 - 83 1.1e-10 N-terminal domain of CBF1 interacting co-repressor CIR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19190
fragaria_vesca FvH4_2g37380 FvH4_3g03932
malus_domestica MD08G1001400.v1.1
prunus_persica Prupe.1G353400_v2.0.a1 Prupe.1G353400_v2.0.a1
pyrus_communis pycom08g00080
rosa_chinensis RchiOBHm_Chr6g0304321
rosa_laevigata RLG00000010990
rosa_multiflora Rmu_co8215432.1_g000001 Rmu_ssc0000218.1_g000039
rosa_roxburghii Rroxscaffold_7G00163840
rosa_rugosa Rorug06G0330100 Rorug06G0330200
rosa_samantha Rh6AG443400 Rh6BG459000 Rh6CG456200 Rh6DG442900
rosa_wichuraiana Rw6G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 1 cut(s) 234
AciI CCGC 6 cut(s) 232, 270, 341, 483, 906, 1467
AclWI GGATC 5 cut(s) 187, 188, 761, 839, 962
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 4 cut(s) 254, 548, 1124, 1243
AcuI CTGAAG 4 cut(s) 1329, 1346, 1527, 1593
AcvI CACGTG 1 cut(s) 824
AdeI CACNNNGTG 1 cut(s) 111
AfaI GTAC 6 cut(s) 125, 217, 1207, 1297, 1672, 1699
AfeI AGCGCT 1 cut(s) 1691
AfiI CCNNNNNNNGG 4 cut(s) 250, 824, 827, 1007
AgsI TTSAA 6 cut(s) 450, 554, 562, 620, 691, 727
AjiI CACGTC 1 cut(s) 1477
AjnI CCWGG 4 cut(s) 195, 343, 805, 950
AleI CACNNNNGTG 1 cut(s) 666
AluBI AGCT 5 cut(s) 317, 324, 371, 419, 1107
AluI AGCT 5 cut(s) 317, 324, 371, 419, 1107
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 6 cut(s) 232, 283, 299, 575, 1281, 1479
AlwI GGATC 5 cut(s) 187, 188, 761, 839, 962
Ama87I CYCGRG 1 cut(s) 464
Aor51HI AGCGCT 1 cut(s) 1691
AoxI GGCC 4 cut(s) 198, 267, 506, 523
ApeKI GCWGC 2 cut(s) 371, 1266
ApoI RAATTY 4 cut(s) 254, 548, 1124, 1243
ArsI GACNNNNNNTTYG 2 cut(s) 863, 895
Asp700I GAANNNNTTC 2 cut(s) 258, 1383
AspLEI GCGC 4 cut(s) 171, 627, 1350, 1692
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 4 cut(s) 20, 653, 990, 1652
AvaI CYCGRG 1 cut(s) 464
BanI GGYRCC 1 cut(s) 144
BbrPI CACGTG 1 cut(s) 824
BbsI GAAGAC 1 cut(s) 1020
Bbv12I GWGCWC 1 cut(s) 405
BbvCI CCTCAGC 1 cut(s) 867
BbvI GCAGC 2 cut(s) 358, 1278
BccI CCATC 1 cut(s) 923
BceAI ACGGC 4 cut(s) 123, 156, 510, 705
BciT130I CCWGG 4 cut(s) 197, 345, 807, 952
BclI TGATCA 1 cut(s) 1413
BcoDI GTCTC 6 cut(s) 232, 283, 299, 575, 1281, 1479
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 2 cut(s) 172, 1693
BisI GCNGC 3 cut(s) 270, 372, 1267
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 3 cut(s) 271, 373, 1268
BmcAI AGTACT 1 cut(s) 1672
Bme1390I CCNGG 4 cut(s) 197, 345, 807, 952
BmeT110I CYCGRG 1 cut(s) 464
BmgBI CACGTC 1 cut(s) 1477
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 116, 146
BmrFI CCNGG 4 cut(s) 197, 345, 807, 952
BmsI GCATC 5 cut(s) 418, 685, 1204, 1270, 1669
BpiI GAAGAC 1 cut(s) 1020
BplI GAGNNNNNCTC 4 cut(s) 212, 244, 885, 917
BpmI CTGGAG 1 cut(s) 599
Bpu10I CCTNAGC 1 cut(s) 867
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 2 cut(s) 779, 925
Bsa29I ATCGAT 1 cut(s) 1382
BsaAI YACGTR 1 cut(s) 824
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 4 cut(s) 140, 219, 572, 950
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 824, 827, 1007
Bse118I RCCGGY 1 cut(s) 1554
Bse1I ACTGG 2 cut(s) 589, 1001
Bse3DI GCAATG 2 cut(s) 634, 1462
BseBI CCWGG 4 cut(s) 197, 345, 807, 952
BseCI ATCGAT 1 cut(s) 1382
BseDI CCNNGG 4 cut(s) 140, 219, 572, 950
BseGI GGATG 3 cut(s) 700, 915, 1045
BseLI CCNNNNNNNGG 4 cut(s) 250, 824, 827, 1007
BseMI GCAATG 2 cut(s) 634, 1462
BseMII CTCAG 7 cut(s) 23, 858, 912, 916, 1239, 1308, 1506
BseNI ACTGG 2 cut(s) 589, 1001
BseRI GAGGAG 4 cut(s) 72, 81, 84, 236
BseXI GCAGC 2 cut(s) 358, 1278
BseYI CCCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 2 cut(s) 341, 676
BshFI GGCC 4 cut(s) 200, 269, 508, 525
BshNI GGYRCC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 1382
BsiEI CGRYCG 2 cut(s) 341, 676
BsiHKAI GWGCWC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 1555
BslFI GGGAC 3 cut(s) 746, 1289, 1487
BslI CCNNNNNNNGG 4 cut(s) 250, 824, 827, 1007
BsmAI GTCTC 6 cut(s) 232, 283, 299, 575, 1281, 1479
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 3 cut(s) 746, 1289, 1487
BsmI GAATGC 4 cut(s) 916, 1225, 1426, 1558
BsnI GGCC 4 cut(s) 200, 269, 508, 525
Bso31I GGTCTC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 6 cut(s) 180, 192, 766, 844, 954, 1413
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 140
BspACI CCGC 6 cut(s) 232, 270, 341, 483, 906, 1467
BspANI GGCC 4 cut(s) 200, 269, 508, 525
BspCNI CTCAG 7 cut(s) 24, 859, 913, 915, 1240, 1309, 1507
BspDI ATCGAT 1 cut(s) 1382
BspFNI CGCG 1 cut(s) 234
BspHI TCATGA 1 cut(s) 1387
BspLI GGNNCC 2 cut(s) 116, 146
BspMAI CTGCAG 1 cut(s) 376
BspPI GGATC 5 cut(s) 187, 188, 761, 839, 962
BspT107I GGYRCC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 232
BsrBI CCGCTC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 634, 1462
BsrFI RCCGGY 1 cut(s) 1554
BsrI ACTGG 2 cut(s) 589, 1001
BssAI RCCGGY 1 cut(s) 1554
BssECI CCNNGG 4 cut(s) 140, 219, 572, 950
BssMI GATC 6 cut(s) 180, 192, 766, 844, 954, 1413
BssT1I CCWWGG 2 cut(s) 140, 572
Bst2UI CCWGG 4 cut(s) 197, 345, 807, 952
Bst4CI ACNGT 2 cut(s) 677, 1300
Bst6I CTCTTC 2 cut(s) 6, 708
BstAPI GCANNNNNTGC 2 cut(s) 371, 380
BstBAI YACGTR 1 cut(s) 824
BstC8I GCNNGC 3 cut(s) 267, 776, 1358
BstDEI CTNAG 7 cut(s) 32, 867, 902, 921, 1248, 1317, 1515
BstDSI CCRYGG 1 cut(s) 140
BstEII GGTNACC 1 cut(s) 659
BstF5I GGATG 3 cut(s) 700, 915, 1045
BstFNI CGCG 1 cut(s) 234
BstH2I RGCGCY 2 cut(s) 172, 1693
BstHHI GCGC 4 cut(s) 171, 627, 1350, 1692
BstKTI GATC 6 cut(s) 183, 195, 769, 847, 957, 1416
BstMAI GTCTC 6 cut(s) 232, 283, 299, 575, 1281, 1479
BstMBI GATC 6 cut(s) 180, 192, 766, 844, 954, 1413
BstMCI CGRYCG 2 cut(s) 341, 676
BstMWI GCNNNNNNNGC 5 cut(s) 362, 371, 380, 491, 755
BstNI CCWGG 4 cut(s) 197, 345, 807, 952
BstNSI RCATGY 1 cut(s) 494
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 4 cut(s) 195, 343, 805, 950
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 358, 1278
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 2 cut(s) 192, 766
BstYI RGATCY 2 cut(s) 192, 766
Bsu15I ATCGAT 1 cut(s) 1382
BsuRI GGCC 4 cut(s) 200, 269, 508, 525
BsuTUI ATCGAT 1 cut(s) 1382
BtgI CCRYGG 1 cut(s) 140
BtgZI GCGATG 1 cut(s) 1247
BtrI CACGTC 1 cut(s) 1477
BtsCI GGATG 3 cut(s) 700, 915, 1045
Cac8I GCNNGC 3 cut(s) 267, 776, 1358
CciI TCATGA 1 cut(s) 1387
CfoI GCGC 4 cut(s) 171, 627, 1350, 1692
Cfr10I RCCGGY 1 cut(s) 1554
Cfr13I GGNCC 1 cut(s) 199
ClaI ATCGAT 1 cut(s) 1382
CseI GACGC 3 cut(s) 194, 200, 1362
Csp6I GTAC 6 cut(s) 124, 216, 1206, 1296, 1671, 1698
CviAII CATG 4 cut(s) 141, 491, 1170, 1388
CviQI GTAC 6 cut(s) 124, 216, 1206, 1296, 1671, 1698
DdeI CTNAG 7 cut(s) 32, 867, 902, 921, 1248, 1317, 1515
DpnI GATC 6 cut(s) 182, 194, 768, 846, 956, 1415
DpnII GATC 6 cut(s) 180, 192, 766, 844, 954, 1413
DraI TTTAAA 2 cut(s) 783, 835
DraIII CACNNNGTG 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 2 cut(s) 6, 708
EarI CTCTTC 2 cut(s) 6, 708
Eco130I CCWWGG 2 cut(s) 140, 572
Eco147I AGGCCT 1 cut(s) 508
Eco31I GGTCTC 1 cut(s) 232
Eco47III AGCGCT 1 cut(s) 1691
Eco57I CTGAAG 4 cut(s) 1329, 1346, 1527, 1593
Eco72I CACGTG 1 cut(s) 824
Eco88I CYCGRG 1 cut(s) 464
Eco91I GGTNACC 1 cut(s) 659
EcoO65I GGTNACC 1 cut(s) 659
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 4 cut(s) 195, 343, 805, 950
EcoT14I CCWWGG 2 cut(s) 140, 572
ErhI CCWWGG 2 cut(s) 140, 572
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 4 cut(s) 144, 494, 1173, 1391
FaqI GGGAC 3 cut(s) 746, 1289, 1487
FatI CATG 4 cut(s) 140, 490, 1169, 1387
FauI CCCGC 2 cut(s) 239, 899
FauNDI CATATG 2 cut(s) 1438, 1636
FbaI TGATCA 1 cut(s) 1413
Fnu4HI GCNGC 3 cut(s) 270, 372, 1267
FokI GGATG 3 cut(s) 707, 902, 1052
Fsp4HI GCNGC 3 cut(s) 270, 372, 1267
FspBI CTAG 1 cut(s) 771
FspI TGCGCA 1 cut(s) 626
GlaI GCGC 4 cut(s) 170, 626, 1349, 1691
GluI GCNGC 3 cut(s) 270, 372, 1267
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 599
HaeII RGCGCY 2 cut(s) 172, 1693
HaeIII GGCC 4 cut(s) 200, 269, 508, 525
HapII CCGG 1 cut(s) 1555
HgaI GACGC 3 cut(s) 194, 200, 1362
HhaI GCGC 4 cut(s) 171, 627, 1350, 1692
Hin1II CATG 4 cut(s) 144, 494, 1173, 1391
Hin6I GCGC 4 cut(s) 169, 625, 1348, 1690
HinP1I GCGC 4 cut(s) 169, 625, 1348, 1690
HpaII CCGG 1 cut(s) 1555
HphI GGTGA 4 cut(s) 20, 653, 990, 1652
Hpy166II GTNNAC 2 cut(s) 963, 1296
Hpy188III TCNNGA 3 cut(s) 1121, 1187, 1388
Hpy8I GTNNAC 2 cut(s) 963, 1296
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 6 cut(s) 11, 56, 685, 1266, 1464, 1502
HpyCH4III ACNGT 2 cut(s) 677, 1300
HpyCH4IV ACGT 2 cut(s) 823, 1476
HpyCH4V TGCA 3 cut(s) 365, 374, 395
HpyF10VI GCNNNNNNNGC 5 cut(s) 362, 371, 380, 491, 755
HpyF3I CTNAG 7 cut(s) 32, 867, 902, 921, 1248, 1317, 1515
HpySE526I ACGT 2 cut(s) 823, 1476
Hsp92II CATG 4 cut(s) 144, 494, 1173, 1391
HspAI GCGC 4 cut(s) 169, 625, 1348, 1690
Ksp22I TGATCA 1 cut(s) 1413
Kzo9I GATC 6 cut(s) 180, 192, 766, 844, 954, 1413
LmnI GCTCC 3 cut(s) 114, 400, 574
Lsp1109I GCAGC 2 cut(s) 358, 1278
LweI GCATC 5 cut(s) 418, 685, 1204, 1270, 1669
MaeI CTAG 1 cut(s) 771
MaeII ACGT 2 cut(s) 823, 1476
MaeIII GTNAC 2 cut(s) 347, 659
MalI GATC 6 cut(s) 182, 194, 768, 846, 956, 1415
MbiI CCGCTC 1 cut(s) 272
MboI GATC 6 cut(s) 180, 192, 766, 844, 954, 1413
MflI RGATCY 2 cut(s) 192, 766
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 7 cut(s) 254, 548, 810, 1124, 1243, 1498, 1564
MlyI GAGTC 3 cut(s) 476, 1161, 1526
MroXI GAANNNNTTC 2 cut(s) 258, 1383
MseI TTAA 4 cut(s) 782, 834, 1493, 1533
MslI CAYNNNNRTG 3 cut(s) 666, 1338, 1437
MspA1I CMGCKG 2 cut(s) 485, 906
MspI CCGG 1 cut(s) 1555
MspR9I CCNGG 4 cut(s) 197, 345, 807, 952
MssI GTTTAAAC 1 cut(s) 835
Mva1269I GAATGC 4 cut(s) 916, 1225, 1426, 1558
MvaI CCWGG 4 cut(s) 197, 345, 807, 952
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 5 cut(s) 362, 371, 380, 491, 755
NcoI CCATGG 1 cut(s) 140
NdeI CATATG 2 cut(s) 1438, 1636
NdeII GATC 6 cut(s) 180, 192, 766, 844, 954, 1413
NlaIII CATG 4 cut(s) 144, 494, 1173, 1391
NlaIV GGNNCC 2 cut(s) 116, 146
NmuCI GTSAC 1 cut(s) 659
NsbI TGCGCA 1 cut(s) 626
NspI RCATGY 1 cut(s) 494
OliI CACNNNNGTG 1 cut(s) 666
PagI TCATGA 1 cut(s) 1387
PceI AGGCCT 1 cut(s) 508
PctI GAATGC 4 cut(s) 916, 1225, 1426, 1558
PdmI GAANNNNTTC 2 cut(s) 258, 1383
PfeI GAWTC 9 cut(s) 130, 1100, 1117, 1232, 1313, 1379, 1384, 1445, 1577
PflMI CCANNNNNTGG 1 cut(s) 1007
PkrI GCNGC 3 cut(s) 271, 373, 1268
PleI GAGTC 3 cut(s) 475, 1160, 1525
PmaCI CACGTG 1 cut(s) 824
PmeI GTTTAAAC 1 cut(s) 835
PmlI CACGTG 1 cut(s) 824
PpsI GAGTC 3 cut(s) 475, 1160, 1525
Ppu21I YACGTR 1 cut(s) 824
Psp6I CCWGG 4 cut(s) 195, 343, 805, 950
PspCI CACGTG 1 cut(s) 824
PspEI GGTNACC 1 cut(s) 659
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 4 cut(s) 195, 343, 805, 950
PspN4I GGNNCC 2 cut(s) 116, 146
PspPI GGNCC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 376
PsuI RGATCY 2 cut(s) 192, 766
RsaI GTAC 6 cut(s) 125, 217, 1207, 1297, 1672, 1699
RsaNI GTAC 6 cut(s) 124, 216, 1206, 1296, 1671, 1698
RseI CAYNNNNRTG 3 cut(s) 666, 1338, 1437
SaqAI TTAA 4 cut(s) 782, 834, 1493, 1533
SatI GCNGC 3 cut(s) 270, 372, 1267
Sau3AI GATC 6 cut(s) 180, 192, 766, 844, 954, 1413
Sau96I GGNCC 1 cut(s) 199
ScaI AGTACT 1 cut(s) 1672
SchI GAGTC 3 cut(s) 476, 1161, 1526
ScrFI CCNGG 4 cut(s) 197, 345, 807, 952
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 5 cut(s) 418, 685, 1204, 1270, 1669
SfcI CTRYAG 1 cut(s) 372
SmiMI CAYNNNNRTG 3 cut(s) 666, 1338, 1437
SmlI CTYRAG 2 cut(s) 794, 940
SmoI CTYRAG 2 cut(s) 794, 940
Sse9I AATT 7 cut(s) 254, 548, 810, 1124, 1243, 1498, 1564
SseBI AGGCCT 1 cut(s) 508
SsiI CCGC 6 cut(s) 232, 270, 341, 483, 906, 1467
SspMI CTAG 1 cut(s) 771
StuI AGGCCT 1 cut(s) 508
StyD4I CCNGG 4 cut(s) 195, 343, 805, 950
StyI CCWWGG 2 cut(s) 140, 572
TaaI ACNGT 2 cut(s) 677, 1300
TaiI ACGT 2 cut(s) 826, 1479
TaqI TCGA 2 cut(s) 337, 1382
TasI AATT 7 cut(s) 254, 548, 810, 1124, 1243, 1498, 1564
TatI WGTACW 4 cut(s) 1205, 1295, 1670, 1697
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 9 cut(s) 130, 1100, 1117, 1232, 1313, 1379, 1384, 1445, 1577
Tru1I TTAA 4 cut(s) 782, 834, 1493, 1533
Tru9I TTAA 4 cut(s) 782, 834, 1493, 1533
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 2 cut(s) 371, 1266
Tsp45I GTSAC 1 cut(s) 659
TspGWI ACGGA 1 cut(s) 675
Van91I CCANNNNNTGG 1 cut(s) 1007
XapI RAATTY 4 cut(s) 254, 548, 1124, 1243
XceI RCATGY 1 cut(s) 494
XmnI GAANNNNTTC 2 cut(s) 258, 1383
XspI CTAG 1 cut(s) 771
ZrmI AGTACT 1 cut(s) 1672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.