Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003818

Physical Location & Seq

Genomic Coordinates Reverse (-)

10699189 .. 10702174

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19670.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGGAAAATCAAGAGGATTCTTGTGAATGTGAGGAGCTTCCATTGAATCACTTAGGAGATGAGGAAGAGTTTAGAAGTTGTTGTGGTGATGAAGAACTTTGGTTAAAGGGTAGTGATGATATAGCTAAAGTTGTAGAGGAGGAGAAAAAAGATGATCTTGATGATGAGTTCTCTGTTAAGATGGTCTTTAAAGGAGTCTCGATATTCGAAAGAGGAGATTTGGGTTCTGGTTATTCGGGAATTGGTGTTGTGTTGGAGAGGTCAGGAGATTTGGAGTTGATTCAGGTTCAGAAGAAGTTGGATTTTTATGTCGAAGAGTCTGTAGCTAACTATTTAGCTCTTATGGATGGTCTTGAAGTAGCTTTACAGAACAATCTCAGCTCTGTGGTTGCTGTAACCGACTCCGAGTTGCTCTATAATCAGATAACTCGTGAGGAGCAGCTCGAGATCCCTCTTTTAGTAGCTCTGAGAGAAAGGGTATTGGAGAAAACAAGTAACCTTAATGGGTTTGTTCTAAAGCTTGCTCCTTTCTGTGATCTTGATGAAGCTCTAAGCTTGGCTCAAGTAGCGGTAGGAATCGTGTCTTCTAATCTTGATGGGGATAAACCGATCGAGAACTGCTCGATCTGCTGTGAAGACCGTCAGTCTGAGATGATGCTATCATTGAAATGCACTCACAAATTCTGTTCGCACTGCATGAAAACGTACGTTGAAGGGAAAGTAAAGACTTCAGAGGTTCCCATCAGGTGTCCTCAAGTGCAATGCAAGCATTATCTCTCAGCAGCGGAATGCAAATCGTTCCTTCCCGTCACTACTTTCAAATCATTCGAGGAAGCAAATGTGTGTAGTAAAAACAATGGGAAGATTTACTGCCCATATCCCAATTGCTCTTTTCTGTTAGACCCGCAAGAATGTCTATCATCAGGAAGGGCTAGCTCAAGCTCGTCTACTCAGTCAGAGAATAGCTGCTGTGTGGAGTGTCCAGTCTGTGAGAGGTTTGTGTGTGTGGACTGTGGTGTTCCTTGGCATGCTTCTATGAGCTGTGAAGAGTTTCAGATTCTTCCAGTTGATGAAAGATACCCAGATGATATTACATTGCATCGCTTGGCAAGGTATAAGAGGTGGAGGCGGTGTCAGCAATGCCGTATAATGATCGAGCTTGCTCAAGGCTGCAACCACATGACTTGCCGATGCGGGCATGAGTTTTGCTACTCGTGTGGAGCAGAGTACAGAGAAGGGCAACAGACTTGCACGTGTGCTTTTTGGGACGATGATGAAGAAGAACAAGAAAACGCAGTAGAGGAAAACACAATTCAAGAAGTTGAGCAATGGCCTTGGGACACATTTAACTCAATTCCAACTGTAATGGACGCGTACTCAGAGCAAGAAAGATCTCAGCTTGCTCTGATCCAAAGGTTCTTAGCAGGTGGAGGGTTTAGTCTCAGTGATCACCATACTACTTATCAGTCACCGCCGCCTCCATGTACAGAGTCATCATATGTTGAAGCCGCAATGAAAGATCTTCATCAGCTTCCTTGGCTTGAGAGGTTTGTGTCTGTTATAAGTGATGATTACTATGAAGAGTATAATAGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

532

Amino Acids

60.34

Weight (kDa)

4.48

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	75 - 150	2.1e-08	Reverse transcriptase-like
IBR	PF01485	274 - 348	1.9e-06	IBR domain, a half RING-finger domain
IBR	PF01485	359 - 417	7.2e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	377 - 415	6.6e-07	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670
fragaria_vesca	FvH4_3g12010 FvH4_3g12010 FvH4_3g12010 FvH4_3g12010
malus_domestica	MD05G1255900.v1.1 MD10G1236000.v1.1 MD10G1236100.v1.1
prunus_persica	Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1
pyrus_communis	pycom05g23470 pycom10g19720 pycom10g19730
rosa_chinensis	RchiOBHm_Chr5g0019691
rosa_laevigata	RLG00000032461
rosa_multiflora	Rmu_co8286553.1_g000001 Rmu_sc0012330.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058420
rosa_rugosa	Rorug05G0052500 Rorug05G0052500 Rorug05G0052600
rosa_samantha	Rh5AG143300 Rh5BG141900 Rh5CG153800 Rh5DG142500
rosa_wichuraiana	Rw5G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1562
AarI	CACCTGC	1 cut(s)	1415
Acc36I	ACCTGC	1 cut(s)	1415
AccI	GTMKAC	1 cut(s)	947
AccII	CGCG	1 cut(s)	1373
AciI	CCGC	8 cut(s)	569, 785, 905, 1129, 1194, 1472, 1475, 1509
AclWI	GGATC	2 cut(s)	442, 1402
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	714
AcvI	CACGTG	1 cut(s)	1254
AfaI	GTAC	4 cut(s)	707, 1229, 1376, 1486
AflIII	ACRYGT	2 cut(s)	1253, 1371
AgsI	TTSAA	7 cut(s)	46, 356, 667, 713, 820, 1316, 1505
AhdI	GACNNNNNGTC	1 cut(s)	643
Alw26I	GTCTC	2 cut(s)	202, 1445
AlwI	GGATC	2 cut(s)	442, 1402
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	1331
ApeKI	GCWGC	4 cut(s)	439, 782, 966, 1170
ApoI	RAATTY	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	1050
AsuHPI	GGTGA	3 cut(s)	98, 1442, 1461
AsuII	TTCGAA	1 cut(s)	207
AsuNHI	GCTAGC	1 cut(s)	932
AvaI	CYCGRG	1 cut(s)	443
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BauI	CACGAG	2 cut(s)	429, 1213
BbrPI	CACGTG	1 cut(s)	1254
BbsI	GAAGAC	2 cut(s)	576, 642
BbvI	GCAGC	4 cut(s)	451, 794, 953, 1157
BccI	CCATC	4 cut(s)	175, 341, 590, 749
BceAI	ACGGC	1 cut(s)	1128
BclI	TGATCA	1 cut(s)	1447
BcoDI	GTCTC	2 cut(s)	202, 1445
BfaI	CTAG	1 cut(s)	933
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	1415
BglII	AGATCT	2 cut(s)	1391, 1519
BisI	GCNGC	6 cut(s)	440, 783, 967, 1171, 1475, 1509
BlsI	GCNGC	6 cut(s)	441, 784, 968, 1172, 1476, 1510
BmeRI	GACNNNNNGTC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	738
BmsI	GCATC	3 cut(s)	645, 1108, 1181
BmtI	GCTAGC	1 cut(s)	936
BpiI	GAAGAC	2 cut(s)	576, 642
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
Bpu14I	TTCGAA	1 cut(s)	207
BpuEI	CTTGAG	5 cut(s)	546, 738, 922, 1149, 1562
BsaAI	YACGTR	1 cut(s)	1254
BsaBI	GATNNNNATC	1 cut(s)	1524
BsaJI	CCNNGG	3 cut(s)	1022, 1334, 1535
BsaXI	ACNNNNNCTCC	2 cut(s)	1117, 1147
Bse1I	ACTGG	3 cut(s)	983, 1064, 1594
Bse3DI	GCAATG	5 cut(s)	767, 1094, 1145, 1334, 1518
Bse8I	GATNNNNATC	1 cut(s)	1524
BseDI	CCNNGG	3 cut(s)	1022, 1334, 1535
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	1524
BseMI	GCAATG	5 cut(s)	767, 1094, 1145, 1334, 1518
BseMII	CTCAG	8 cut(s)	391, 458, 639, 792, 965, 1392, 1409, 1456
BseNI	ACTGG	3 cut(s)	983, 1064, 1594
BseRI	GAGGAG	5 cut(s)	47, 152, 155, 228, 449
BseXI	GCAGC	4 cut(s)	451, 794, 953, 1157
Bsh1236I	CGCG	1 cut(s)	1373
Bsh1285I	CGRYCG	1 cut(s)	612
BshFI	GGCC	1 cut(s)	1333
BsiEI	CGRYCG	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	443
BsiWI	CGTACG	1 cut(s)	705
BslFI	GGGAC	2 cut(s)	1280, 1352
BsmAI	GTCTC	2 cut(s)	202, 1445
BsmFI	GGGAC	2 cut(s)	1280, 1352
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	1 cut(s)	1333
BsoBI	CYCGRG	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	1484
BspACI	CCGC	8 cut(s)	569, 785, 905, 1129, 1194, 1472, 1475, 1509
BspANI	GGCC	1 cut(s)	1333
BspCNI	CTCAG	8 cut(s)	390, 459, 640, 791, 964, 1391, 1408, 1455
BspFNI	CGCG	1 cut(s)	1373
BspLI	GGNNCC	1 cut(s)	738
BspMI	ACCTGC	1 cut(s)	1415
BspOI	GCTAGC	1 cut(s)	936
BspPI	GGATC	2 cut(s)	442, 1402
BspT104I	TTCGAA	1 cut(s)	207
BsrDI	GCAATG	5 cut(s)	767, 1094, 1145, 1334, 1518
BsrGI	TGTACA	1 cut(s)	1484
BsrI	ACTGG	3 cut(s)	983, 1064, 1594
BssECI	CCNNGG	3 cut(s)	1022, 1334, 1535
BssSI	CACGAG	2 cut(s)	429, 1213
BssT1I	CCWWGG	3 cut(s)	1022, 1334, 1535
Bst2BI	CACGAG	2 cut(s)	429, 1213
Bst4CI	ACNGT	3 cut(s)	641, 1013, 1363
Bst6I	CTCTTC	4 cut(s)	60, 309, 1041, 1575
BstAUI	TGTACA	1 cut(s)	1484
BstBAI	YACGTR	1 cut(s)	1254
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	7 cut(s)	522, 767, 934, 1029, 1161, 1196, 1401
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	1373
BstMAI	GTCTC	2 cut(s)	202, 1445
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	5 cut(s)	566, 627, 766, 1135, 1537
BstNSI	RCATGY	1 cut(s)	1031
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	1373
BstV1I	GCAGC	4 cut(s)	451, 794, 953, 1157
BstV2I	GAAGAC	2 cut(s)	576, 642
BstX2I	RGATCY	3 cut(s)	447, 1391, 1519
BstYI	RGATCY	3 cut(s)	447, 1391, 1519
BsuRI	GGCC	1 cut(s)	1333
BtgZI	GCGATG	1 cut(s)	1085
BtsCI	GGATG	1 cut(s)	352
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	2 cut(s)	691, 1450
BveI	ACCTGC	1 cut(s)	1415
Cac8I	GCNNGC	7 cut(s)	522, 767, 934, 1029, 1161, 1196, 1401
CseI	GACGC	1 cut(s)	1379
Csp6I	GTAC	4 cut(s)	706, 1228, 1375, 1485
CspCI	CAANNNNNGTGG	2 cut(s)	1166, 1201
CviAII	CATG	5 cut(s)	697, 1028, 1180, 1199, 1482
CviQI	GTAC	4 cut(s)	706, 1228, 1375, 1485
DraI	TTTAAA	1 cut(s)	190
DriI	GACNNNNNGTC	1 cut(s)	643
Eam1104I	CTCTTC	4 cut(s)	60, 309, 1041, 1575
Eam1105I	GACNNNNNGTC	1 cut(s)	643
EarI	CTCTTC	4 cut(s)	60, 309, 1041, 1575
Eco130I	CCWWGG	3 cut(s)	1022, 1334, 1535
Eco57I	CTGAAG	1 cut(s)	714
Eco72I	CACGTG	1 cut(s)	1254
Eco88I	CYCGRG	1 cut(s)	443
EcoT14I	CCWWGG	3 cut(s)	1022, 1334, 1535
ErhI	CCWWGG	3 cut(s)	1022, 1334, 1535
FaeI	CATG	5 cut(s)	700, 1031, 1183, 1202, 1485
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 170, 202
FaqI	GGGAC	2 cut(s)	1280, 1352
FatI	CATG	5 cut(s)	696, 1027, 1179, 1198, 1481
FauI	CCCGC	2 cut(s)	912, 1187
FauNDI	CATATG	1 cut(s)	1498
FbaI	TGATCA	1 cut(s)	1447
FblI	GTMKAC	1 cut(s)	947
Fnu4HI	GCNGC	6 cut(s)	440, 783, 967, 1171, 1475, 1509
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	6 cut(s)	440, 783, 967, 1171, 1475, 1509
FspBI	CTAG	1 cut(s)	933
GluI	GCNGC	6 cut(s)	440, 783, 967, 1171, 1475, 1509
HaeIII	GGCC	1 cut(s)	1333
HgaI	GACGC	1 cut(s)	1379
Hin1II	CATG	5 cut(s)	700, 1031, 1183, 1202, 1485
HindIII	AAGCTT	2 cut(s)	518, 553
HinfI	GANTC	9 cut(s)	17, 46, 195, 280, 317, 401, 576, 1057, 1490
HphI	GGTGA	3 cut(s)	98, 1442, 1461
Hpy166II	GTNNAC	2 cut(s)	948, 1009
Hpy8I	GTNNAC	2 cut(s)	948, 1009
HpyAV	CCTTC	4 cut(s)	707, 812, 921, 1229
HpyCH4III	ACNGT	3 cut(s)	641, 1013, 1363
HpyCH4IV	ACGT	3 cut(s)	704, 708, 1253
HpyCH4V	TGCA	8 cut(s)	672, 696, 760, 765, 792, 1099, 1173, 1251
HpyF10VI	GCNNNNNNNGC	5 cut(s)	566, 627, 766, 1135, 1537
HpySE526I	ACGT	3 cut(s)	704, 708, 1253
Hsp92II	CATG	5 cut(s)	700, 1031, 1183, 1202, 1485
Ksp22I	TGATCA	1 cut(s)	1447
LmnI	GCTCC	4 cut(s)	34, 436, 529, 1220
LpnPI	CCDG	9 cut(s)	213, 249, 269, 730, 909, 996, 1077, 1095, 1410
Lsp1109I	GCAGC	4 cut(s)	451, 794, 953, 1157
LweI	GCATC	3 cut(s)	645, 1108, 1181
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	3 cut(s)	704, 708, 1253
MaeIII	GTNAC	4 cut(s)	394, 494, 808, 1467
MfeI	CAATTG	1 cut(s)	883
MflI	RGATCY	3 cut(s)	447, 1391, 1519
MluCI	AATT	5 cut(s)	240, 680, 883, 1311, 1353
MluI	ACGCGT	1 cut(s)	1371
MlyI	GAGTC	4 cut(s)	204, 326, 395, 1499
MmeI	TCCRAC	3 cut(s)	234, 279, 1382
MroXI	GAANNNNTTC	1 cut(s)	1050
MseI	TTAA	5 cut(s)	104, 177, 189, 501, 1347
MslI	CAYNNNNRTG	1 cut(s)	667
MspA1I	CMGCKG	1 cut(s)	785
MunI	CAATTG	1 cut(s)	883
Mva1269I	GAATGC	1 cut(s)	794
MvnI	CGCG	1 cut(s)	1373
MwoI	GCNNNNNNNGC	5 cut(s)	566, 627, 766, 1135, 1537
NdeI	CATATG	1 cut(s)	1498
NheI	GCTAGC	1 cut(s)	932
NlaIII	CATG	5 cut(s)	700, 1031, 1183, 1202, 1485
NlaIV	GGNNCC	1 cut(s)	738
NmuCI	GTSAC	2 cut(s)	808, 1467
NspI	RCATGY	1 cut(s)	1031
NspV	TTCGAA	1 cut(s)	207
PaeI	GCATGC	1 cut(s)	1031
PaeR7I	CTCGAG	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	1415
PctI	GAATGC	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	1050
PfeI	GAWTC	5 cut(s)	17, 46, 280, 576, 1057
Pfl23II	CGTACG	1 cut(s)	705
PkrI	GCNGC	6 cut(s)	441, 784, 968, 1172, 1476, 1510
Ple19I	CGATCG	1 cut(s)	612
PleI	GAGTC	4 cut(s)	203, 325, 395, 1498
PmaCI	CACGTG	1 cut(s)	1254
PmlI	CACGTG	1 cut(s)	1254
PpsI	GAGTC	4 cut(s)	203, 325, 395, 1498
Ppu21I	YACGTR	1 cut(s)	1254
PsiI	TTATAA	1 cut(s)	1562
PspCI	CACGTG	1 cut(s)	1254
PspLI	CGTACG	1 cut(s)	705
PspN4I	GGNNCC	1 cut(s)	738
PsuI	RGATCY	3 cut(s)	447, 1391, 1519
PvuI	CGATCG	1 cut(s)	612
RsaI	GTAC	4 cut(s)	707, 1229, 1376, 1486
RsaNI	GTAC	4 cut(s)	706, 1228, 1375, 1485
RseI	CAYNNNNRTG	1 cut(s)	667
SaqAI	TTAA	5 cut(s)	104, 177, 189, 501, 1347
SatI	GCNGC	6 cut(s)	440, 783, 967, 1171, 1475, 1509
SchI	GAGTC	4 cut(s)	204, 326, 395, 1499
SfaNI	GCATC	3 cut(s)	645, 1108, 1181
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	443
SfuI	TTCGAA	1 cut(s)	207
SlaI	CTCGAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	667
SmlI	CTYRAG	6 cut(s)	443, 561, 753, 937, 1164, 1541
SmoI	CTYRAG	6 cut(s)	443, 561, 753, 937, 1164, 1541
SphI	GCATGC	1 cut(s)	1031
Sse9I	AATT	5 cut(s)	240, 680, 883, 1311, 1353
SsiI	CCGC	8 cut(s)	569, 785, 905, 1129, 1194, 1472, 1475, 1509
SspMI	CTAG	1 cut(s)	933
StyI	CCWWGG	3 cut(s)	1022, 1334, 1535
TaaI	ACNGT	3 cut(s)	641, 1013, 1363
TaiI	ACGT	3 cut(s)	707, 711, 1256
TaqI	TCGA	8 cut(s)	200, 207, 312, 444, 612, 623, 828, 1155
TasI	AATT	5 cut(s)	240, 680, 883, 1311, 1353
TatI	WGTACW	2 cut(s)	1227, 1484
TauI	GCSGC	2 cut(s)	1477, 1511
TfiI	GAWTC	5 cut(s)	17, 46, 280, 576, 1057
Tru1I	TTAA	5 cut(s)	104, 177, 189, 501, 1347
Tru9I	TTAA	5 cut(s)	104, 177, 189, 501, 1347
TscAI	CASTG	2 cut(s)	698, 1450
TseFI	GTSAC	2 cut(s)	808, 1467
TseI	GCWGC	4 cut(s)	439, 782, 966, 1170
Tsp45I	GTSAC	2 cut(s)	808, 1467
TspDTI	ATGAA	8 cut(s)	105, 558, 713, 1086, 1290, 1514, 1529, 1593
TspRI	CASTG	2 cut(s)	698, 1450
XapI	RAATTY	1 cut(s)	680
XceI	RCATGY	1 cut(s)	1031
XhoI	CTCGAG	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	947
XmnI	GAANNNNTTC	1 cut(s)	1050
XspI	CTAG	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.