Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003818

Physical Location & Seq

Genomic Coordinates Forward (+)

22794385 .. 22795177

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTGCTACCACATGACATGCTGGGGAATATTGATTTTAAGCGGTGTGGGCATGAGTTCTGTTATTCTTGTGGTGCTGAATATCGGGATAGCCAACAGACTTGTCAATGTGCCTTTTGGGACGAAGACAACAACAACACACAAGACTTGGTCACTCAGTCTATGCAAGAATCCGAGCAATGGGCGTGGGAAACATTCAATTCACTCCCCATGATAATGGATGCATACTCGGACCAAGAGAAATCGCAGCTGGCGCTGATCCAGAGATTCCTAGCGGGGGGTTTCAGTTTAAGCGACCATCCCCCTTATCAATCCCCACCTCGGTGTACAGATTCTTATGTAGACGCCATGAAAGATCTCCATCAGCTTCCTTGGCTCGAGAGGTTTGTTTCCGTTATAAGTGATAACTACTACGAAGAATATATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

144

Amino Acids

16.78

Weight (kDa)

4.27

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670
fragaria_vesca	FvH4_3g12010 FvH4_3g12010 FvH4_3g12010 FvH4_3g12010
malus_domestica	MD05G1255900.v1.1 MD10G1236000.v1.1 MD10G1236100.v1.1
prunus_persica	Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1
pyrus_communis	pycom05g23470 pycom10g19720 pycom10g19730
rosa_chinensis	RchiOBHm_Chr5g0019691
rosa_laevigata	RLG00000032461
rosa_multiflora	Rmu_co8286553.1_g000001 Rmu_sc0012330.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058420
rosa_rugosa	Rorug05G0052500 Rorug05G0052500 Rorug05G0052600
rosa_samantha	Rh5AG143300 Rh5BG141900 Rh5CG153800 Rh5DG142500
rosa_wichuraiana	Rw5G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	2 cut(s)	43, 275
AclWI	GGATC	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	3 cut(s)	180, 277, 321
AgsI	TTSAA	1 cut(s)	199
AleI	CACNNNNGTG	1 cut(s)	322
AluBI	AGCT	2 cut(s)	250, 367
AluI	AGCT	2 cut(s)	250, 367
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	2 cut(s)	306, 369
BfaI	CTAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	257
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	232
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	320, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 277, 321
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	320, 371
BseGI	GGATG	2 cut(s)	226, 298
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	3 cut(s)	180, 277, 321
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	259
BseYI	CCCAGC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	3 cut(s)	180, 277, 321
BsmFI	GGGAC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	377
Bsp1407I	TGTACA	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	258, 355
BspACI	CCGC	2 cut(s)	43, 275
BspCNI	CTCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	320, 371
BssMI	GATC	2 cut(s)	258, 355
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	345
BstAUI	TGTACA	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	226, 298
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	261, 358
BstMBI	GATC	2 cut(s)	258, 355
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 253, 373
BstNSI	RCATGY	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	226, 298
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	327
CspCI	CAANNNNNGTGG	2 cut(s)	167, 202
CviAII	CATG	5 cut(s)	14, 19, 53, 211, 349
CviJI	RGCY	4 cut(s)	93, 250, 367, 376
CviKI_1	RGCY	4 cut(s)	93, 250, 367, 376
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	260, 357
DpnII	GATC	2 cut(s)	258, 355
Eco130I	CCWWGG	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	371
EcoT22I	ATGCAT	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	5 cut(s)	17, 22, 56, 214, 352
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	5 cut(s)	13, 18, 52, 210, 348
FauI	CCCGC	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	2 cut(s)	233, 285
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	248
GsaI	CCCAGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	257
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	5 cut(s)	17, 22, 56, 214, 352
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	3 cut(s)	170, 267, 332
Hpy166II	GTNNAC	2 cut(s)	327, 343
Hpy188I	TCNGA	2 cut(s)	175, 232
Hpy188III	TCNNGA	3 cut(s)	86, 262, 379
Hpy8I	GTNNAC	2 cut(s)	327, 343
HpyCH4V	TGCA	2 cut(s)	166, 224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 253, 373
HpyF3I	CTNAG	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	5 cut(s)	17, 22, 56, 214, 352
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	258, 355
LpnPI	CCDG	3 cut(s)	8, 236, 275
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	260, 357
MboI	GATC	2 cut(s)	258, 355
MboII	GAAGA	2 cut(s)	137, 428
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	1 cut(s)	199
MnlI	CCTC	2 cut(s)	330, 375
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	2 cut(s)	39, 290
MslI	CAYNNNNRTG	2 cut(s)	215, 322
MspA1I	CMGCKG	1 cut(s)	250
MwoI	GCNNNNNNNGC	3 cut(s)	49, 253, 373
NdeII	GATC	2 cut(s)	258, 355
NlaIII	CATG	5 cut(s)	17, 22, 56, 214, 352
NmuCI	GTSAC	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	1 cut(s)	22
OliI	CACNNNNGTG	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	170, 267, 332
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	249
PsiI	TTATAA	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	2 cut(s)	215, 322
SaqAI	TTAA	2 cut(s)	39, 290
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	2 cut(s)	258, 355
Sau96I	GGNCC	1 cut(s)	232
SetI	ASST	4 cut(s)	252, 322, 369, 386
SfaNI	GCATC	1 cut(s)	211
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	215, 322
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	43, 275
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	371
TaqI	TCGA	1 cut(s)	378
TasI	AATT	1 cut(s)	199
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	170, 267, 332
Tru1I	TTAA	2 cut(s)	39, 290
Tru9I	TTAA	2 cut(s)	39, 290
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	22
XhoI	CTCGAG	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.