Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003818

Physical Location & Seq

Genomic Coordinates Forward (+)

25350408 .. 25353249

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGGAGGGTCAGGCAATTTCTGGTGATGAGGTTTCATTAAATTTAGTTAGAGAGGAAGACGAAGAAGAGTTTCGGAGCTGTTGTGAAGACGATGATGAAGTTTGGAAGGAGACTGAAGAACCAGTGAAAGTTGAGTCAAAAGATGATCTCGATGAATTTTCGGTGAAAATGTTCTTCAAAGGCATGTCCATAGCTGGGTACGGGGACGCCAGTTGTGGGCTTTCTGGAATCGGAGTTGTCATGGAAAGATCGATCAATGTTCCTGCAATTCAGGTGCAGAAAAGGCTTGATTTTTATGTGGAGGAGCCTGTGGCTGACTATTTAGCCCTGATGGATGGTCTAATGGAGGCTGTGCAGAATAAATTCCGTAGGGTGTATGCATTCACAGATTCTGAGCTGTTATATGATCAGGTTTCACATGAGGAGAAACTTGAAGTTCCAATCTTGATAGCACTGAGGCAAAGGATCCTAGAGCATGCCTGTAATCTTGAAGCTTTTGTCCTGAAACTTGTCCCCACTGTAGATCTTGAGCGGCCATCAAAATTAGCCCAAGTGGCAATTGGAGTTGTCTCCTTTCCTGCTAAGGGTGTTGAATCACTTGAAAATTGTTCCATCTGTTGCGACGATAAACCATCCCCAATGATGATCACCATGAAGTGTTCTCATAAGTTCTGTACTCATTGCATGAGGACATATGTTGATGGGAAGGTACAATCCTCTCAAGTTCCCATCAGATGTCCTCAGCTGCGATGCATGTATTACATCTCCACTGCTGAGTGCAAATCTTTTCTTCCACTCACTTCTTATGAGTCATTGGAGAAATCCCTTGCAGAAGCGAATATTCTCCACTCAGATAGAGTGTACTGCCCATTTCCAAATTGTTCCACCCTGCTTGCTCCCCTTGAATGTTTGTCAGCCAGGGCAAGTTCATCAAGTCAGTCAGATAACAGCTGTGTCGAATGTCCAGTTTGTCAGAGGTTCATATGTGTGGATTGTGGGGTTCCTTGGCATTCTTCTATGAGCTGTGAGGAGTTCCAAAACCTCCCACTGGAAGAGAGAGATGCTGCAGATATTACCTTGCATCGCTTGGCACAGAATAACAGCTGGAGGCGTTGCCAGCAGTGTCGTAGGATGATTGAGCTCTCTCAAGGTTGCTACCACATGACGTGCTGGTGTGGGCATGAGTTCTGTTATTCTTGTGGTGCTGAATATCGGGATAGCCAACAGACTTGTCAATGTGCCTTTTGGGACGAAGACAACAATAACAACACAGAAGACTTGGTCACTCAGTCTATGCATGAATCTGAGCAATGGGCGTGGGAAACATTCAATTCGTTGCCCATGATAATGGATGCGTACTCGGACCAAGAGAGATCACAGCTGGAGCTGATCCAGAGGTTCCTAGCTGGGGGATTCAGTTTAAGCGACCATCCCCCTTACCAGTCCCCACCGCGATGTACAGATTCTTATGTAGATGCCATGAAAGATCTTCATCAGCTTCCTTGGCTGGAGAGGTTTGTGTCCGTGATAAGCGATAACTACTATGAAGAATATATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

521

Amino Acids

59.43

Weight (kDa)

4.6

Isoelectric Point (pI)

62.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670
fragaria_vesca	FvH4_3g12010 FvH4_3g12010 FvH4_3g12010 FvH4_3g12010
malus_domestica	MD05G1255900.v1.1 MD10G1236000.v1.1 MD10G1236100.v1.1
prunus_persica	Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1
pyrus_communis	pycom05g23470 pycom10g19720 pycom10g19730
rosa_chinensis	RchiOBHm_Chr5g0019691
rosa_laevigata	RLG00000032461
rosa_multiflora	Rmu_co8286553.1_g000001 Rmu_sc0012330.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058420
rosa_rugosa	Rorug05G0052500 Rorug05G0052500 Rorug05G0052600
rosa_samantha	Rh5AG143300 Rh5BG141900 Rh5CG153800 Rh5DG142500
rosa_wichuraiana	Rw5G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	532
AccII	CGCG	1 cut(s)	1453
AciI	CCGC	2 cut(s)	532, 1451
AclWI	GGATC	3 cut(s)	460, 473, 1384
AcoI	YGGCCR	1 cut(s)	533
AcsI	RAATTY	3 cut(s)	40, 155, 362
AcuI	CTGAAG	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	6 cut(s)	200, 676, 711, 863, 1358, 1459
AfiI	CCNNNNNNNGG	5 cut(s)	195, 216, 584, 1048, 1408
AgsI	TTSAA	7 cut(s)	178, 434, 491, 593, 602, 905, 1330
AjiI	CACGTC	1 cut(s)	1167
AjnI	CCWGG	1 cut(s)	917
Alw21I	GWGCWC	1 cut(s)	1143
Alw26I	GTCTC	2 cut(s)	104, 574
AlwI	GGATC	3 cut(s)	460, 473, 1384
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	2 cut(s)	745, 1064
ApoI	RAATTY	3 cut(s)	40, 155, 362
Asp700I	GAANNNNTTC	3 cut(s)	69, 170, 362
AspS9I	GGNCC	1 cut(s)	1363
AsuHPI	GGTGA	3 cut(s)	35, 175, 640
AvaII	GGWCC	1 cut(s)	1363
BamHI	GGATCC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	1143
BbsI	GAAGAC	4 cut(s)	63, 93, 1260, 1281
Bbv12I	GWGCWC	1 cut(s)	1143
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	2 cut(s)	732, 1051
BccI	CCATC	8 cut(s)	325, 329, 544, 620, 640, 695, 737, 1437
BciT130I	CCWGG	1 cut(s)	919
BclI	TGATCA	2 cut(s)	406, 645
BcoDI	GTCTC	2 cut(s)	104, 574
BfaI	CTAG	2 cut(s)	470, 1403
BfmI	CTRYAG	2 cut(s)	519, 1065
BglI	GCCNNNNNGGC	1 cut(s)	554
BglII	AGATCT	2 cut(s)	523, 1486
BisI	GCNGC	3 cut(s)	533, 746, 1065
BlsI	GCNGC	3 cut(s)	534, 747, 1066
Bme1390I	CCNGG	1 cut(s)	919
Bme18I	GGWCC	1 cut(s)	1363
BmgBI	CACGTC	1 cut(s)	1167
BmgT120I	GGNCC	1 cut(s)	1363
BmiI	GGNNCC	4 cut(s)	306, 467, 1002, 1400
BmrFI	CCNGG	1 cut(s)	919
BmsI	GCATC	5 cut(s)	740, 1051, 1090, 1342, 1465
BpiI	GAAGAC	4 cut(s)	63, 93, 1260, 1281
BpmI	CTGGAG	3 cut(s)	1126, 1403, 1529
Bpu10I	CCTNAGC	2 cut(s)	582, 741
BpuEI	CTTGAG	3 cut(s)	548, 705, 1131
Bsa29I	ATCGAT	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	1491
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	918, 1004, 1502
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 216, 584, 1048, 1408
Bse1I	ACTGG	6 cut(s)	122, 210, 965, 1053, 1441, 1558
Bse3DI	GCAATG	2 cut(s)	679, 1316
Bse8I	GATNNNNATC	1 cut(s)	1491
BseBI	CCWGG	1 cut(s)	919
BseCI	ATCGAT	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	918, 1004, 1502
BseGI	GGATG	5 cut(s)	340, 632, 1137, 1357, 1429
BseJI	GATNNNNATC	1 cut(s)	1491
BseLI	CCNNNNNNNGG	5 cut(s)	195, 216, 584, 1048, 1408
BseMI	GCAATG	2 cut(s)	679, 1316
BseMII	CTCAG	7 cut(s)	384, 446, 755, 765, 864, 1296, 1301
BseNI	ACTGG	6 cut(s)	122, 210, 965, 1053, 1441, 1558
BseRI	GAGGAG	3 cut(s)	317, 437, 1043
BseXI	GCAGC	2 cut(s)	732, 1051
BseYI	CCCAGC	2 cut(s)	194, 1406
BsgI	GTGCAG	2 cut(s)	296, 374
Bsh1236I	CGCG	1 cut(s)	1453
BshFI	GGCC	1 cut(s)	535
BshVI	ATCGAT	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	1143
BslFI	GGGAC	4 cut(s)	218, 497, 1262, 1429
BslI	CCNNNNNNNGG	5 cut(s)	195, 216, 584, 1048, 1408
BsmAI	GTCTC	2 cut(s)	104, 574
BsmFI	GGGAC	4 cut(s)	218, 497, 1262, 1429
BsmI	GAATGC	2 cut(s)	380, 1009
BsnI	GGCC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	1143
Bsp1407I	TGTACA	1 cut(s)	1457
BspACI	CCGC	2 cut(s)	532, 1451
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	7 cut(s)	385, 447, 754, 766, 863, 1297, 1300
BspDI	ATCGAT	1 cut(s)	251
BspFNI	CGCG	1 cut(s)	1453
BspLI	GGNNCC	4 cut(s)	306, 467, 1002, 1400
BspMAI	CTGCAG	1 cut(s)	1069
BspPI	GGATC	3 cut(s)	460, 473, 1384
BsrBI	CCGCTC	1 cut(s)	532
BsrDI	GCAATG	2 cut(s)	679, 1316
BsrGI	TGTACA	1 cut(s)	1457
BsrI	ACTGG	6 cut(s)	122, 210, 965, 1053, 1441, 1558
BssECI	CCNNGG	3 cut(s)	918, 1004, 1502
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	1004, 1502
Bst2UI	CCWGG	1 cut(s)	919
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	60, 1047
BstACI	GRCGYC	1 cut(s)	207
BstAUI	TGTACA	1 cut(s)	1457
BstC8I	GCNNGC	3 cut(s)	477, 894, 1118
BstDEI	CTNAG	8 cut(s)	393, 455, 582, 741, 774, 850, 1287, 1305
BstF5I	GGATG	5 cut(s)	340, 632, 1137, 1357, 1429
BstFNI	CGCG	1 cut(s)	1453
BstMAI	GTCTC	2 cut(s)	104, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	283, 554, 1117, 1504
BstNI	CCWGG	1 cut(s)	919
BstNSI	RCATGY	3 cut(s)	187, 479, 757
BstSCI	CCNGG	1 cut(s)	917
BstSFI	CTRYAG	2 cut(s)	519, 1065
BstUI	CGCG	1 cut(s)	1453
BstV1I	GCAGC	2 cut(s)	732, 1051
BstV2I	GAAGAC	4 cut(s)	63, 93, 1260, 1281
BstX2I	RGATCY	3 cut(s)	465, 523, 1486
BstXI	CCANNNNNNTGG	1 cut(s)	1348
BstYI	RGATCY	3 cut(s)	465, 523, 1486
Bsu15I	ATCGAT	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	535
BsuTUI	ATCGAT	1 cut(s)	251
BtgZI	GCGATG	3 cut(s)	763, 1067, 1468
BtrI	CACGTC	1 cut(s)	1167
BtsCI	GGATG	5 cut(s)	340, 632, 1137, 1357, 1429
BtsI	GCAGTG	2 cut(s)	768, 1127
BtsIMutI	CAGTG	6 cut(s)	129, 452, 516, 768, 1046, 1127
Cac8I	GCNNGC	3 cut(s)	477, 894, 1118
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	1363
ClaI	ATCGAT	1 cut(s)	251
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	6 cut(s)	199, 675, 710, 862, 1357, 1458
CspCI	CAANNNNNGTGG	4 cut(s)	874, 909, 1298, 1333
CviQI	GTAC	6 cut(s)	199, 675, 710, 862, 1357, 1458
DdeI	CTNAG	8 cut(s)	393, 455, 582, 741, 774, 850, 1287, 1305
EaeI	YGGCCR	1 cut(s)	533
Eam1104I	CTCTTC	2 cut(s)	60, 1047
EarI	CTCTTC	2 cut(s)	60, 1047
Ecl136II	GAGCTC	1 cut(s)	1141
Eco130I	CCWWGG	2 cut(s)	1004, 1502
Eco24I	GRGCYC	1 cut(s)	1143
Eco47I	GGWCC	1 cut(s)	1363
Eco53kI	GAGCTC	1 cut(s)	1141
Eco57I	CTGAAG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	1141
EcoRII	CCWGG	1 cut(s)	917
EcoT14I	CCWWGG	2 cut(s)	1004, 1502
EcoT22I	ATGCAT	3 cut(s)	382, 755, 1299
EcoT38I	GRGCYC	1 cut(s)	1143
ErhI	CCWWGG	2 cut(s)	1004, 1502
FaqI	GGGAC	4 cut(s)	218, 497, 1262, 1429
FauNDI	CATATG	2 cut(s)	694, 983
FbaI	TGATCA	2 cut(s)	406, 645
Fnu4HI	GCNGC	3 cut(s)	533, 746, 1065
FokI	GGATG	5 cut(s)	347, 619, 1144, 1364, 1416
FriOI	GRGCYC	1 cut(s)	1143
Fsp4HI	GCNGC	3 cut(s)	533, 746, 1065
FspBI	CTAG	2 cut(s)	470, 1403
GluI	GCNGC	3 cut(s)	533, 746, 1065
GsaI	CCCAGC	2 cut(s)	198, 1410
GsuI	CTGGAG	3 cut(s)	1126, 1403, 1529
HaeIII	GGCC	1 cut(s)	535
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	8 cut(s)	134, 228, 389, 593, 809, 1301, 1413, 1463
HphI	GGTGA	3 cut(s)	35, 175, 640
Hpy166II	GTNNAC	1 cut(s)	862
Hpy188I	TCNGA	9 cut(s)	75, 233, 394, 734, 853, 943, 975, 1306, 1363
Hpy188III	TCNNGA	8 cut(s)	149, 225, 445, 488, 502, 527, 1214, 1393
Hpy8I	GTNNAC	1 cut(s)	862
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	2 cut(s)	100, 700
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	1166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	283, 554, 1117, 1504
HpyF3I	CTNAG	8 cut(s)	393, 455, 582, 741, 774, 850, 1287, 1305
HpySE526I	ACGT	1 cut(s)	1166
Hsp92I	GRCGYC	1 cut(s)	207
Ksp22I	TGATCA	2 cut(s)	406, 645
LmnI	GCTCC	4 cut(s)	75, 304, 901, 1384
Lsp1109I	GCAGC	2 cut(s)	732, 1051
LweI	GCATC	5 cut(s)	740, 1051, 1090, 1342, 1465
MaeI	CTAG	2 cut(s)	470, 1403
MaeII	ACGT	1 cut(s)	1166
MaeIII	GTNAC	1 cut(s)	1282
MbiI	CCGCTC	1 cut(s)	532
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	3 cut(s)	465, 523, 1486
MhlI	GDGCHC	1 cut(s)	1143
MlyI	GAGTC	2 cut(s)	143, 818
Mph1103I	ATGCAT	3 cut(s)	382, 755, 1299
MroXI	GAANNNNTTC	3 cut(s)	69, 170, 362
MseI	TTAA	2 cut(s)	38, 1421
MslI	CAYNNNNRTG	3 cut(s)	986, 1346, 1453
MspA1I	CMGCKG	4 cut(s)	745, 951, 1104, 1381
MspR9I	CCNGG	1 cut(s)	919
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	2 cut(s)	380, 1009
MvaI	CCWGG	1 cut(s)	919
MvnI	CGCG	1 cut(s)	1453
MwoI	GCNNNNNNNGC	4 cut(s)	283, 554, 1117, 1504
NdeI	CATATG	2 cut(s)	694, 983
NlaIV	GGNNCC	4 cut(s)	306, 467, 1002, 1400
NmuCI	GTSAC	1 cut(s)	1282
NsiI	ATGCAT	3 cut(s)	382, 755, 1299
NspI	RCATGY	3 cut(s)	187, 479, 757
PaeI	GCATGC	1 cut(s)	479
PctI	GAATGC	2 cut(s)	380, 1009
PdmI	GAANNNNTTC	3 cut(s)	69, 170, 362
PfeI	GAWTC	6 cut(s)	228, 389, 593, 1301, 1413, 1463
PflFI	GACNNNGTC	1 cut(s)	1280
PkrI	GCNGC	3 cut(s)	534, 747, 1066
PleI	GAGTC	2 cut(s)	142, 817
PpsI	GAGTC	2 cut(s)	142, 817
Psp124BI	GAGCTC	1 cut(s)	1143
Psp6I	CCWGG	1 cut(s)	917
PspFI	CCCAGC	2 cut(s)	194, 1406
PspGI	CCWGG	1 cut(s)	917
PspN4I	GGNNCC	4 cut(s)	306, 467, 1002, 1400
PspPI	GGNCC	1 cut(s)	1363
PstI	CTGCAG	1 cut(s)	1069
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	3 cut(s)	465, 523, 1486
PsyI	GACNNNGTC	1 cut(s)	1280
PvuII	CAGCTG	4 cut(s)	745, 951, 1104, 1381
RsaI	GTAC	6 cut(s)	200, 676, 711, 863, 1358, 1459
RsaNI	GTAC	6 cut(s)	199, 675, 710, 862, 1357, 1458
RseI	CAYNNNNRTG	3 cut(s)	986, 1346, 1453
SacI	GAGCTC	1 cut(s)	1143
SaqAI	TTAA	2 cut(s)	38, 1421
SatI	GCNGC	3 cut(s)	533, 746, 1065
Sau96I	GGNCC	1 cut(s)	1363
SchI	GAGTC	2 cut(s)	143, 818
ScrFI	CCNGG	1 cut(s)	919
SduI	GDGCHC	1 cut(s)	1143
SfaNI	GCATC	5 cut(s)	740, 1051, 1090, 1342, 1465
SfcI	CTRYAG	2 cut(s)	519, 1065
SinI	GGWCC	1 cut(s)	1363
SmiMI	CAYNNNNRTG	3 cut(s)	986, 1346, 1453
SmlI	CTYRAG	3 cut(s)	527, 720, 1146
SmoI	CTYRAG	3 cut(s)	527, 720, 1146
SphI	GCATGC	1 cut(s)	479
SsiI	CCGC	2 cut(s)	532, 1451
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	2 cut(s)	470, 1403
SstI	GAGCTC	1 cut(s)	1143
StyD4I	CCNGG	1 cut(s)	917
StyI	CCWWGG	2 cut(s)	1004, 1502
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	1 cut(s)	1169
TaqI	TCGA	3 cut(s)	150, 251, 957
TatI	WGTACW	3 cut(s)	674, 861, 1457
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	6 cut(s)	228, 389, 593, 1301, 1413, 1463
Tru1I	TTAA	2 cut(s)	38, 1421
Tru9I	TTAA	2 cut(s)	38, 1421
TscAI	CASTG	6 cut(s)	129, 459, 523, 775, 1053, 1127
TseFI	GTSAC	1 cut(s)	1282
TseI	GCWGC	2 cut(s)	745, 1064
Tsp45I	GTSAC	1 cut(s)	1282
TspGWI	ACGGA	2 cut(s)	356, 1513
TspRI	CASTG	6 cut(s)	129, 459, 523, 775, 1053, 1127
Tth111I	GACNNNGTC	1 cut(s)	1280
VpaK11BI	GGWCC	1 cut(s)	1363
XapI	RAATTY	3 cut(s)	40, 155, 362
XceI	RCATGY	3 cut(s)	187, 479, 757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XmnI	GAANNNNTTC	3 cut(s)	69, 170, 362
XspI	CTAG	2 cut(s)	470, 1403
Zsp2I	ATGCAT	3 cut(s)	382, 755, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.