Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012330.1

Orthogroup ID

OG0003818

Physical Location & Seq

Genomic Coordinates Reverse (-)

7193 .. 7958

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012330.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgtgcaagcttgtaatcggagcagactcgggcaatatgggctcgatttactatggtcctaattcttatgttacacttaaaaagagtcaaatacacgggtgtggccatgagttctgttatgcttgtggtgctgaatatagagatggtcaacagacgtgtcaatgtgccttttgggatgaagacaaccctgaagacttggtcactcagtctatgcaagaatctgagcaatgggcatgggaaacattcaactcgcttcctatgatcatggatgcatactcagagcaagagagatcacagctggcactgatccaaaggttcctagctgggggtttcagtttaagtgatcaccacccttaccaaccagcccaatctccgcctcgctgtacagatgcctatgtagatgccatgaaagatctccaccagcttccttggcttgagaggtttgtttctgttataagtgataactactatgaagaatatatccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

162

Amino Acids

18.59

Weight (kDa)

4.46

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670
fragaria_vesca	FvH4_3g12010 FvH4_3g12010 FvH4_3g12010 FvH4_3g12010
malus_domestica	MD05G1255900.v1.1 MD10G1236000.v1.1 MD10G1236100.v1.1
prunus_persica	Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1
pyrus_communis	pycom05g23470 pycom10g19720 pycom10g19730
rosa_chinensis	RchiOBHm_Chr5g0019691
rosa_laevigata	RLG00000032461
rosa_multiflora	Rmu_co8286553.1_g000001 Rmu_sc0012330.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058420
rosa_rugosa	Rorug05G0052500 Rorug05G0052500 Rorug05G0052600
rosa_samantha	Rh5AG143300 Rh5BG141900 Rh5CG153800 Rh5DG142500
rosa_wichuraiana	Rw5G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	247
AjiI	CACGTC	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	4 cut(s)	10, 298, 323, 424
AluI	AGCT	4 cut(s)	10, 298, 323, 424
AlwI	GGATC	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	186, 198
BccI	CCATC	1 cut(s)	137
BclI	TGATCA	2 cut(s)	261, 343
BfaI	CTAG	1 cut(s)	320
BglII	AGATCT	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	317
BmsI	GCATC	3 cut(s)	259, 379, 391
BpiI	GAAGAC	2 cut(s)	186, 198
BpuEI	CTTGAG	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	181, 274
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	3 cut(s)	213, 218, 291
BseYI	CCCAGC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	325
BsnI	GGCC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	383
Bsp143I	GATC	5 cut(s)	261, 290, 306, 343, 412
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	3 cut(s)	214, 217, 290
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	5 cut(s)	261, 290, 306, 343, 412
BssT1I	CCWWGG	1 cut(s)	428
BstAUI	TGTACA	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	8, 300
BstDEI	CTNAG	3 cut(s)	204, 222, 277
BstF5I	GGATG	2 cut(s)	181, 274
BstKTI	GATC	5 cut(s)	264, 293, 309, 346, 415
BstMBI	GATC	5 cut(s)	261, 290, 306, 343, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 128, 430
BstV2I	GAAGAC	2 cut(s)	186, 198
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	181, 274
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	8, 300
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	4 cut(s)	107, 234, 265, 406
CviJI	RGCY	8 cut(s)	10, 42, 105, 298, 323, 365, 424, 433
CviKI_1	RGCY	8 cut(s)	10, 42, 105, 298, 323, 365, 424, 433
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	3 cut(s)	204, 222, 277
DpnI	GATC	5 cut(s)	263, 292, 308, 345, 414
DpnII	GATC	5 cut(s)	261, 290, 306, 343, 412
EaeI	YGGCCR	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	428
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	4 cut(s)	110, 237, 268, 409
FatI	CATG	4 cut(s)	106, 233, 264, 405
FbaI	TGATCA	2 cut(s)	261, 343
FokI	GGATG	2 cut(s)	188, 281
FriOI	GRGCYC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	320
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	110, 237, 268, 409
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	26, 85, 218
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	3 cut(s)	20, 223, 280
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	6, 214, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 128, 430
HpyF3I	CTNAG	3 cut(s)	204, 222, 277
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	110, 237, 268, 409
Ksp22I	TGATCA	2 cut(s)	261, 343
Kzo9I	GATC	5 cut(s)	261, 290, 306, 343, 412
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	5 cut(s)	201, 284, 309, 375, 434
LweI	GCATC	3 cut(s)	259, 379, 391
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	70, 199
MalI	GATC	5 cut(s)	263, 292, 308, 345, 414
MboI	GATC	5 cut(s)	261, 290, 306, 343, 412
MboII	GAAGA	3 cut(s)	191, 203, 485
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	1 cut(s)	61
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	20, 94
MnlI	CCTC	2 cut(s)	387, 432
Mox20I	TGGCCA	1 cut(s)	105
Mph1103I	ATGCAT	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	2 cut(s)	78, 338
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	298
MwoI	GCNNNNNNNGC	3 cut(s)	39, 128, 430
NdeII	GATC	5 cut(s)	261, 290, 306, 343, 412
NlaIII	CATG	4 cut(s)	110, 237, 268, 409
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	274
OliI	CACNNNNGTG	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	218
PflFI	GACNNNGTC	1 cut(s)	197
PleI	GAGTC	2 cut(s)	20, 93
PpsI	GAGTC	2 cut(s)	20, 93
PsiI	TTATAA	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	412
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	78, 338
Sau3AI	GATC	5 cut(s)	261, 290, 306, 343, 412
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	2 cut(s)	20, 94
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	7 cut(s)	12, 158, 300, 317, 325, 426, 443
SfaNI	GCATC	3 cut(s)	259, 379, 391
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	374
SspMI	CTAG	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	428
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	61
TatI	WGTACW	1 cut(s)	383
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	78, 338
Tru9I	TTAA	2 cut(s)	78, 338
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	192, 422, 486
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	56
XspI	CTAG	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.