MD05G1255900.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
38663166 .. 38667187
4022 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1255900.v1.1.491

Sequence Viewer

Length: 1575 bp
ATGGAGGGTCAGGCAATTTCTGGTGATGAGGTTTCATTAAATTTAGTTAGAGAGGAAGACGAAGAAGAGTTTCGGAGCTGTTGTGAAGACGATGATGAAGTTTGGAAGGAGATTGAAGAACCAGTGAAAGTTGAGGCAAAGGATGAGTCAAAAGATGATCTCGATGAATTTTCGGTGAAAATGTTCTTCAAAGGCATGTCCATAGCTGGGTACGGGGACGCCAGTTGTGGGCTTTCTGGAATCGGAGTTGTCATGGAAAGATCAACCAATGTTCGTGCAATTCAGGTGCAGAAAAGGCTTGATTTTTATGTGGAGGAGCCTGTGGCTGACTATTTAGCCCTGATGGATGGTCTAATGGAGGCTGTGCAGAATAAATTCCGTAGGGTGTATGCATTCACAGATTCTGAGCTGTTACATGATCAGGTTTCACATGAGGAGAAACTTGAAGTTCCAATCTTAATAGCACTGAGGCAAAGGATCCTAGAGCATGCCAGTAATCTTGAAGCTTTTGTCCTGAAACTTGTCCCCACTGTAGATCTTGAGCGGCCATCAAAATTAGCTCAAGTGGCAATTGGAGTTGTCTCTTTTCCTGCTAAGGGTGTTGAATCACTTGAAAATTGTTCCATCTGTTGCGATGATAAACCATCCCCAATGATGATCACCATGAAGTGTTCTCATAAGTTCTGCACTCATTGCATGAGGACATTTGTTGATGGGAAGGTACAATCCTCTCAAGTTCCCATCAGATGTCCTCAGCTGCAATGTATGTATTACATCTCCACTGCTGAGTGCAAATCTTTTCTTCCACTCACTTCTTATGAGTCATTGGAGAAATCCCTTGCAGAAGCGAATATTCTCCACTCAGATAGAGTGTACTGCCCATTTCCAAATTGTTCCACCCTGCTTGGTCCCCTTGAATGTTTGTCAGCTAGGGCAAGTTCATCAAGTCAGTCAGATAACAGCTGTGTCGAATGTCCAGTTTGTCAGAGGTTCATATGTGTGGATTGTGGGGTTCCTTGGCATTCTTCTATGAGCTGTGAGGAGTTCCAAAACCTCCCACTGGAAGAGAGAGATGCTGCAGATATTACCTTGCATCGCTTGGCACAAAATAACAGCTGGAGGCGTTGCCAGCAGTGTCGTAGGATGATTGAGCTCACTCAAGGTTGCTACCACATGACGTGCTGGTGTGGGCATGAGTTCTGTTATTCTTGTGGTGCTGAATATCGGGATAGCCAACAGACTTGTCAATGTGCCTTCTGGGATGAAGACAACAATAACAACACAGAAGACTTGGTCACTCAGTCTATGCAAGAATCCGAGCAATGGGCGTGGGAAACATTCAATTCGTTGCCCATGATAATGGATGCGTACTCGGACCAAGAGAGATCACAGCTGGAGCTGATCCAGAGGTTCCTAGCTGGGGGATTCAGTTTAAGCGACCATCCCCCTTACCAGTCCCCACCGCGATGTACAGATTCTTATGTAGATGCTATGAAAGATCTCCATCAGCTTCCTTGGCTCGAGAGGTTTGTGTCCGTGATAAGTGATAACTACTATGAAGAATATATCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

525

Amino Acids

59.83

Weight (kDa)

4.59

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 77 - 176 3.5e-08 Reverse transcriptase-like
IBR PF01485 280 - 346 1.1e-08 IBR domain, a half RING-finger domain
IBR PF01485 366 - 415 1.3e-06 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 544
AccII CGCG 1 cut(s) 1465
AciI CCGC 2 cut(s) 544, 1463
AclWI GGATC 3 cut(s) 472, 485, 1396
AcoI YGGCCR 1 cut(s) 545
AcsI RAATTY 3 cut(s) 40, 167, 374
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 5 cut(s) 212, 723, 875, 1370, 1471
AfiI CCNNNNNNNGG 6 cut(s) 207, 228, 596, 1060, 1323, 1420
AgsI TTSAA 8 cut(s) 116, 190, 446, 503, 605, 614, 917, 1342
AjiI CACGTC 1 cut(s) 1179
Alw21I GWGCWC 1 cut(s) 1155
Alw26I GTCTC 1 cut(s) 586
AlwI GGATC 3 cut(s) 472, 485, 1396
AlwNI CAGNNNCTG 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 1520
AoxI GGCC 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 757, 1076
ApoI RAATTY 3 cut(s) 40, 167, 374
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
Asp700I GAANNNNTTC 3 cut(s) 69, 182, 374
AspS9I GGNCC 2 cut(s) 908, 1375
AsuHPI GGTGA 3 cut(s) 35, 187, 652
AvaI CYCGRG 1 cut(s) 1520
AvaII GGWCC 2 cut(s) 908, 1375
BamHI GGATCC 1 cut(s) 477
BanII GRGCYC 1 cut(s) 1155
BbsI GAAGAC 4 cut(s) 63, 93, 1272, 1293
Bbv12I GWGCWC 1 cut(s) 1155
BbvCI CCTCAGC 1 cut(s) 753
BbvI GCAGC 2 cut(s) 744, 1063
BccI CCATC 9 cut(s) 337, 341, 556, 632, 652, 707, 749, 1449, 1512
BclI TGATCA 2 cut(s) 418, 657
BcoDI GTCTC 1 cut(s) 586
BfaI CTAG 3 cut(s) 482, 930, 1415
BfmI CTRYAG 2 cut(s) 531, 1077
BglII AGATCT 2 cut(s) 535, 1498
BisI GCNGC 3 cut(s) 545, 758, 1077
BlsI GCNGC 3 cut(s) 546, 759, 1078
Bme18I GGWCC 2 cut(s) 908, 1375
BmeT110I CYCGRG 1 cut(s) 1520
BmgBI CACGTC 1 cut(s) 1179
BmgT120I GGNCC 2 cut(s) 908, 1375
BmiI GGNNCC 5 cut(s) 318, 479, 910, 1014, 1412
BmsI GCATC 4 cut(s) 1063, 1102, 1354, 1477
BpiI GAAGAC 4 cut(s) 63, 93, 1272, 1293
BpmI CTGGAG 2 cut(s) 1138, 1415
Bpu10I CCTNAGC 2 cut(s) 594, 753
BpuEI CTTGAG 4 cut(s) 546, 560, 717, 1143
BsaBI GATNNNNATC 1 cut(s) 1503
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 1016, 1514
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 6 cut(s) 207, 228, 596, 1060, 1323, 1420
Bse1I ACTGG 7 cut(s) 122, 222, 492, 977, 1065, 1453, 1570
Bse3DI GCAATG 3 cut(s) 691, 767, 1328
Bse8I GATNNNNATC 1 cut(s) 1503
BseDI CCNNGG 2 cut(s) 1016, 1514
BseGI GGATG 7 cut(s) 148, 352, 644, 1149, 1267, 1369, 1441
BseJI GATNNNNATC 1 cut(s) 1503
BseLI CCNNNNNNNGG 6 cut(s) 207, 228, 596, 1060, 1323, 1420
BseMI GCAATG 3 cut(s) 691, 767, 1328
BseMII CTCAG 6 cut(s) 396, 458, 767, 777, 876, 1313
BseNI ACTGG 7 cut(s) 122, 222, 492, 977, 1065, 1453, 1570
BseRI GAGGAG 3 cut(s) 329, 449, 1055
BseXI GCAGC 2 cut(s) 744, 1063
BseYI CCCAGC 2 cut(s) 206, 1418
BsgI GTGCAG 3 cut(s) 308, 386, 670
Bsh1236I CGCG 1 cut(s) 1465
BshFI GGCC 1 cut(s) 547
BsiHKAI GWGCWC 1 cut(s) 1155
BsiHKCI CYCGRG 1 cut(s) 1520
BslFI GGGAC 4 cut(s) 230, 509, 894, 1441
BslI CCNNNNNNNGG 6 cut(s) 207, 228, 596, 1060, 1323, 1420
BsmAI GTCTC 1 cut(s) 586
BsmFI GGGAC 4 cut(s) 230, 509, 894, 1441
BsmI GAATGC 2 cut(s) 392, 1021
BsnI GGCC 1 cut(s) 547
BsoBI CYCGRG 1 cut(s) 1520
Bsp1286I GDGCHC 1 cut(s) 1155
Bsp1407I TGTACA 1 cut(s) 1469
Bsp143I GATC 9 cut(s) 157, 260, 418, 477, 535, 657, 1385, 1401, 1498
BspACI CCGC 2 cut(s) 544, 1463
BspANI GGCC 1 cut(s) 547
BspCNI CTCAG 6 cut(s) 397, 459, 766, 778, 875, 1312
BspFNI CGCG 1 cut(s) 1465
BspLI GGNNCC 5 cut(s) 318, 479, 910, 1014, 1412
BspMAI CTGCAG 1 cut(s) 1081
BspPI GGATC 3 cut(s) 472, 485, 1396
BsrBI CCGCTC 1 cut(s) 544
BsrDI GCAATG 3 cut(s) 691, 767, 1328
BsrGI TGTACA 1 cut(s) 1469
BsrI ACTGG 7 cut(s) 122, 222, 492, 977, 1065, 1453, 1570
BssECI CCNNGG 2 cut(s) 1016, 1514
BssMI GATC 9 cut(s) 157, 260, 418, 477, 535, 657, 1385, 1401, 1498
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 2 cut(s) 1016, 1514
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 2 cut(s) 60, 1059
BstACI GRCGYC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 693
BstAUI TGTACA 1 cut(s) 1469
BstC8I GCNNGC 2 cut(s) 489, 1130
BstDEI CTNAG 7 cut(s) 405, 467, 594, 753, 786, 862, 1299
BstF5I GGATG 7 cut(s) 148, 352, 644, 1149, 1267, 1369, 1441
BstFNI CGCG 1 cut(s) 1465
BstKTI GATC 9 cut(s) 160, 263, 421, 480, 538, 660, 1388, 1404, 1501
BstMAI GTCTC 1 cut(s) 586
BstMBI GATC 9 cut(s) 157, 260, 418, 477, 535, 657, 1385, 1401, 1498
BstMWI GCNNNNNNNGC 5 cut(s) 295, 566, 693, 1129, 1516
BstNSI RCATGY 2 cut(s) 199, 491
BstSFI CTRYAG 2 cut(s) 531, 1077
BstUI CGCG 1 cut(s) 1465
BstV1I GCAGC 2 cut(s) 744, 1063
BstV2I GAAGAC 4 cut(s) 63, 93, 1272, 1293
BstX2I RGATCY 3 cut(s) 477, 535, 1498
BstXI CCANNNNNNTGG 1 cut(s) 1360
BstYI RGATCY 3 cut(s) 477, 535, 1498
BsuRI GGCC 1 cut(s) 547
BtgZI GCGATG 3 cut(s) 648, 1079, 1480
BtrI CACGTC 1 cut(s) 1179
BtsCI GGATG 7 cut(s) 148, 352, 644, 1149, 1267, 1369, 1441
BtsI GCAGTG 2 cut(s) 780, 1139
BtsIMutI CAGTG 6 cut(s) 129, 464, 528, 780, 1058, 1139
Cac8I GCNNGC 2 cut(s) 489, 1130
CaiI CAGNNNCTG 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 908, 1375
CseI GACGC 1 cut(s) 227
Csp6I GTAC 5 cut(s) 211, 722, 874, 1369, 1470
CspCI CAANNNNNGTGG 4 cut(s) 886, 921, 1310, 1345
CviQI GTAC 5 cut(s) 211, 722, 874, 1369, 1470
DdeI CTNAG 7 cut(s) 405, 467, 594, 753, 786, 862, 1299
DpnI GATC 9 cut(s) 159, 262, 420, 479, 537, 659, 1387, 1403, 1500
DpnII GATC 9 cut(s) 157, 260, 418, 477, 535, 657, 1385, 1401, 1498
EaeI YGGCCR 1 cut(s) 545
Eam1104I CTCTTC 2 cut(s) 60, 1059
EarI CTCTTC 2 cut(s) 60, 1059
Ecl136II GAGCTC 1 cut(s) 1153
Eco130I CCWWGG 2 cut(s) 1016, 1514
Eco24I GRGCYC 1 cut(s) 1155
Eco47I GGWCC 2 cut(s) 908, 1375
Eco53kI GAGCTC 1 cut(s) 1153
Eco88I CYCGRG 1 cut(s) 1520
EcoICRI GAGCTC 1 cut(s) 1153
EcoT14I CCWWGG 2 cut(s) 1016, 1514
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 1155
ErhI CCWWGG 2 cut(s) 1016, 1514
FaqI GGGAC 4 cut(s) 230, 509, 894, 1441
FauNDI CATATG 1 cut(s) 995
FbaI TGATCA 2 cut(s) 418, 657
Fnu4HI GCNGC 3 cut(s) 545, 758, 1077
FokI GGATG 7 cut(s) 155, 359, 631, 1156, 1274, 1376, 1428
FriOI GRGCYC 1 cut(s) 1155
Fsp4HI GCNGC 3 cut(s) 545, 758, 1077
FspBI CTAG 3 cut(s) 482, 930, 1415
GluI GCNGC 3 cut(s) 545, 758, 1077
GsaI CCCAGC 2 cut(s) 210, 1422
GsuI CTGGAG 2 cut(s) 1138, 1415
HaeIII GGCC 1 cut(s) 547
HgaI GACGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 8 cut(s) 146, 240, 401, 605, 821, 1313, 1425, 1475
HphI GGTGA 3 cut(s) 35, 187, 652
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 9 cut(s) 75, 245, 406, 746, 865, 955, 987, 1318, 1375
Hpy188III TCNNGA 8 cut(s) 161, 237, 500, 514, 539, 1226, 1405, 1522
Hpy8I GTNNAC 1 cut(s) 874
HpyAV CCTTC 3 cut(s) 100, 712, 1264
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 1 cut(s) 1178
HpyF10VI GCNNNNNNNGC 5 cut(s) 295, 566, 693, 1129, 1516
HpyF3I CTNAG 7 cut(s) 405, 467, 594, 753, 786, 862, 1299
HpySE526I ACGT 1 cut(s) 1178
Hsp92I GRCGYC 1 cut(s) 219
Ksp22I TGATCA 2 cut(s) 418, 657
Kzo9I GATC 9 cut(s) 157, 260, 418, 477, 535, 657, 1385, 1401, 1498
LmnI GCTCC 3 cut(s) 75, 316, 1396
Lsp1109I GCAGC 2 cut(s) 744, 1063
LweI GCATC 4 cut(s) 1063, 1102, 1354, 1477
MaeI CTAG 3 cut(s) 482, 930, 1415
MaeII ACGT 1 cut(s) 1178
MaeIII GTNAC 2 cut(s) 411, 1294
MalI GATC 9 cut(s) 159, 262, 420, 479, 537, 659, 1387, 1403, 1500
MbiI CCGCTC 1 cut(s) 544
MboI GATC 9 cut(s) 157, 260, 418, 477, 535, 657, 1385, 1401, 1498
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 3 cut(s) 477, 535, 1498
MhlI GDGCHC 1 cut(s) 1155
MlyI GAGTC 2 cut(s) 155, 830
Mph1103I ATGCAT 1 cut(s) 394
MroXI GAANNNNTTC 3 cut(s) 69, 182, 374
MseI TTAA 3 cut(s) 38, 458, 1433
MslI CAYNNNNRTG 3 cut(s) 998, 1358, 1465
MspA1I CMGCKG 4 cut(s) 757, 963, 1116, 1393
MunI CAATTG 1 cut(s) 570
Mva1269I GAATGC 2 cut(s) 392, 1021
MvnI CGCG 1 cut(s) 1465
MwoI GCNNNNNNNGC 5 cut(s) 295, 566, 693, 1129, 1516
NdeI CATATG 1 cut(s) 995
NdeII GATC 9 cut(s) 157, 260, 418, 477, 535, 657, 1385, 1401, 1498
NlaIV GGNNCC 5 cut(s) 318, 479, 910, 1014, 1412
NmuCI GTSAC 1 cut(s) 1294
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 2 cut(s) 199, 491
PaeI GCATGC 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 1520
PctI GAATGC 2 cut(s) 392, 1021
PdmI GAANNNNTTC 3 cut(s) 69, 182, 374
PfeI GAWTC 6 cut(s) 240, 401, 605, 1313, 1425, 1475
PflFI GACNNNGTC 1 cut(s) 1292
PkrI GCNGC 3 cut(s) 546, 759, 1078
PleI GAGTC 2 cut(s) 154, 829
PpsI GAGTC 2 cut(s) 154, 829
Psp124BI GAGCTC 1 cut(s) 1155
PspFI CCCAGC 2 cut(s) 206, 1418
PspN4I GGNNCC 5 cut(s) 318, 479, 910, 1014, 1412
PspPI GGNCC 2 cut(s) 908, 1375
PstI CTGCAG 1 cut(s) 1081
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 3 cut(s) 477, 535, 1498
PsyI GACNNNGTC 1 cut(s) 1292
PvuII CAGCTG 4 cut(s) 757, 963, 1116, 1393
RsaI GTAC 5 cut(s) 212, 723, 875, 1370, 1471
RsaNI GTAC 5 cut(s) 211, 722, 874, 1369, 1470
RseI CAYNNNNRTG 3 cut(s) 998, 1358, 1465
SacI GAGCTC 1 cut(s) 1155
SaqAI TTAA 3 cut(s) 38, 458, 1433
SatI GCNGC 3 cut(s) 545, 758, 1077
Sau3AI GATC 9 cut(s) 157, 260, 418, 477, 535, 657, 1385, 1401, 1498
Sau96I GGNCC 2 cut(s) 908, 1375
SchI GAGTC 2 cut(s) 155, 830
SduI GDGCHC 1 cut(s) 1155
SfaNI GCATC 4 cut(s) 1063, 1102, 1354, 1477
SfcI CTRYAG 2 cut(s) 531, 1077
Sfr274I CTCGAG 1 cut(s) 1520
SinI GGWCC 2 cut(s) 908, 1375
SlaI CTCGAG 1 cut(s) 1520
SmiMI CAYNNNNRTG 3 cut(s) 998, 1358, 1465
SmlI CTYRAG 5 cut(s) 539, 561, 732, 1158, 1520
SmoI CTYRAG 5 cut(s) 539, 561, 732, 1158, 1520
SphI GCATGC 1 cut(s) 491
SsiI CCGC 2 cut(s) 544, 1463
SspI AATATT 1 cut(s) 853
SspMI CTAG 3 cut(s) 482, 930, 1415
SstI GAGCTC 1 cut(s) 1155
StyI CCWWGG 2 cut(s) 1016, 1514
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 1 cut(s) 1181
TaqI TCGA 3 cut(s) 162, 969, 1521
TatI WGTACW 2 cut(s) 873, 1469
TauI GCSGC 1 cut(s) 547
TfiI GAWTC 6 cut(s) 240, 401, 605, 1313, 1425, 1475
Tru1I TTAA 3 cut(s) 38, 458, 1433
Tru9I TTAA 3 cut(s) 38, 458, 1433
TscAI CASTG 6 cut(s) 129, 471, 535, 787, 1065, 1139
TseFI GTSAC 1 cut(s) 1294
TseI GCWGC 2 cut(s) 757, 1076
Tsp45I GTSAC 1 cut(s) 1294
TspDTI ATGAA 9 cut(s) 24, 111, 180, 680, 930, 982, 1278, 1508, 1572
TspGWI ACGGA 2 cut(s) 368, 1525
TspRI CASTG 6 cut(s) 129, 471, 535, 787, 1065, 1139
Tth111I GACNNNGTC 1 cut(s) 1292
VpaK11BI GGWCC 2 cut(s) 908, 1375
XapI RAATTY 3 cut(s) 40, 167, 374
XceI RCATGY 2 cut(s) 199, 491
XhoI CTCGAG 1 cut(s) 1520
XmnI GAANNNNTTC 3 cut(s) 69, 182, 374
XspI CTAG 3 cut(s) 482, 930, 1415
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.