Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8286553.1

Orthogroup ID

OG0003818

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 636

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8286553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

gtgtggccatgagttctgttatgcttgtggtgctgaatatagagatggtcaacagacgtgtcaatgtgccttttgggatgaagacaaccctgaagacttggtcactcagtctatgcaagaatctgagcaatgggcatgggaaacattcaactcgcttcctatgatcatggatgcatactcagagcaagagagatcacagctggcactgatccaaaggttcctagctgggggtttcagtttaagtgatcaccacccttaccaaccagcccaatctccgcctcgctgtacagatgcctatgtagatgccatgaaagatctccaccagcttccttggcttgagaggtttgtttctgttataagtgataactactatgaagaatatatccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

129

Amino Acids

15.08

Weight (kDa)

4.2

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670
fragaria_vesca	FvH4_3g12010 FvH4_3g12010 FvH4_3g12010 FvH4_3g12010
malus_domestica	MD05G1255900.v1.1 MD10G1236000.v1.1 MD10G1236100.v1.1
prunus_persica	Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1
pyrus_communis	pycom05g23470 pycom10g19720 pycom10g19730
rosa_chinensis	RchiOBHm_Chr5g0019691
rosa_laevigata	RLG00000032461
rosa_multiflora	Rmu_co8286553.1_g000001 Rmu_sc0012330.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058420
rosa_rugosa	Rorug05G0052500 Rorug05G0052500 Rorug05G0052600
rosa_samantha	Rh5AG143300 Rh5BG141900 Rh5CG153800 Rh5DG142500
rosa_wichuraiana	Rw5G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	149
AjiI	CACGTC	1 cut(s)	58
AluBI	AGCT	3 cut(s)	200, 225, 326
AluI	AGCT	3 cut(s)	200, 225, 326
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	7
BbsI	GAAGAC	2 cut(s)	88, 100
BccI	CCATC	1 cut(s)	39
BclI	TGATCA	2 cut(s)	163, 245
BfaI	CTAG	1 cut(s)	222
BglII	AGATCT	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	3 cut(s)	161, 281, 293
BpiI	GAAGAC	2 cut(s)	88, 100
BpuEI	CTTGAG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	83, 176
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	115, 120, 193
BseYI	CCCAGC	1 cut(s)	225
BshFI	GGCC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	227
BsnI	GGCC	1 cut(s)	7
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	5 cut(s)	163, 192, 208, 245, 314
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	3 cut(s)	116, 119, 192
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	5 cut(s)	163, 192, 208, 245, 314
BssT1I	CCWWGG	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	3 cut(s)	106, 124, 179
BstF5I	GGATG	2 cut(s)	83, 176
BstKTI	GATC	5 cut(s)	166, 195, 211, 248, 317
BstMBI	GATC	5 cut(s)	163, 192, 208, 245, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 332
BstV2I	GAAGAC	2 cut(s)	88, 100
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	7
BtrI	CACGTC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	83, 176
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	4 cut(s)	9, 136, 167, 308
CviJI	RGCY	6 cut(s)	7, 200, 225, 267, 326, 335
CviKI_1	RGCY	6 cut(s)	7, 200, 225, 267, 326, 335
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	106, 124, 179
DpnI	GATC	5 cut(s)	165, 194, 210, 247, 316
DpnII	GATC	5 cut(s)	163, 192, 208, 245, 314
EaeI	YGGCCR	1 cut(s)	5
EciI	GGCGGA	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	4 cut(s)	12, 139, 170, 311
FatI	CATG	4 cut(s)	8, 135, 166, 307
FbaI	TGATCA	2 cut(s)	163, 245
FokI	GGATG	2 cut(s)	90, 183
FspBI	CTAG	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	12, 139, 170, 311
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	120
HphI	GGTGA	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	125, 182
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	116, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 332
HpyF3I	CTNAG	3 cut(s)	106, 124, 179
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	12, 139, 170, 311
Ksp22I	TGATCA	2 cut(s)	163, 245
Kzo9I	GATC	5 cut(s)	163, 192, 208, 245, 314
LpnPI	CCDG	5 cut(s)	103, 186, 211, 277, 336
LweI	GCATC	3 cut(s)	161, 281, 293
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	5 cut(s)	165, 194, 210, 247, 316
MboI	GATC	5 cut(s)	163, 192, 208, 245, 314
MboII	GAAGA	3 cut(s)	93, 105, 387
MflI	RGATCY	1 cut(s)	314
MlsI	TGGCCA	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	7
MnlI	CCTC	2 cut(s)	289, 334
Mox20I	TGGCCA	1 cut(s)	7
Mph1103I	ATGCAT	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	7
MspA1I	CMGCKG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	30, 332
NdeII	GATC	5 cut(s)	163, 192, 208, 245, 314
NlaIII	CATG	4 cut(s)	12, 139, 170, 311
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	120
PflFI	GACNNNGTC	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	314
PsyI	GACNNNGTC	1 cut(s)	99
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	5 cut(s)	163, 192, 208, 245, 314
SetI	ASST	6 cut(s)	60, 202, 219, 227, 328, 345
SfaNI	GCATC	3 cut(s)	161, 281, 293
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	330
TaiI	ACGT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	94, 324, 388
TspRI	CASTG	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	99
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.