Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003818

Physical Location & Seq

Genomic Coordinates Reverse (-)

5659722 .. 5663621

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G108300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGAGGGTCAGGCAAGTTTTGGTGATGAGGTTTCTGTAAATTTACTCAGAGAGGAAGATGAAGAAGAGTTTCGTAGTTGTTGCGAAGATGATGAAGTTTGGAAGGAGACCGAAGAACCGGTGAAGGTGGATCCAAAAGATGATCTCGATGAATTTTCAGTGAAGATGTTCTTCAAAGGCATGTCCATAGCTGGGTATGGGGACTCAGGTTTCGGGCTTTCTGGAATTGGAGTTGTCATGGAAAGGTCAACCAATGTTCCTGCACTTCAGGTGCAGAAAAGGCTTGATTTTTATGTGGAGGAGCCTGTGGCTAACTATTTAGCCCTGATGGATGGCCTAATGGAAGCTGTGCAAAATAAAGTCCGCCGGGTTTATGCATTCACAGATTCTGAGCTGCTATATGATCAGGTATCACATGAGCAGAAACTTGAAATTCCACTCCTAGTAGCGCTGAGGCAAAGGATCCTAGAGCATGCCAGTCATCTTGATGCTTTTGTTCTGAAACTTGTCCCCACTGTAGATCTTGAGCTGCCATCAAAATTAGCTCAAGTGGCAATTGGAGTTGTCTCTTTTCCTGCTAAGGGTGTTGAATCACTTGAAAACTGTTCCATCTGTTGCGACGATAAACCATCCCTAATGATGATCACCATGAAATGTTCTCATAAGTTCTGTTCGCATTGCATGAGGACATACGTTGATGGGAAGGTGCAGTCCTCGCAAGTCCCCATCAGATGTCCTCAGCCGAGGTGCAAGTATTACGTCTCCACTGCTGAGTGCAAATCTTTTCTTCCACTCACTTCTTATGAATCATTGGAGAAAGCCCTCGCAGAGGCAAATATTCTCCACTCAGATAGAATTTACTGCCCATATCCAAATTGTTCTGTCCTGCTTGATCCTCTTGAATGTTTGTCAGCTAGGGCAAGTTCATCAAGTCAGTCAGATAACAGCTGCATTGACTGTCCAGTTTGTCAGAGATTCATCTGTGTAGATTGTGGGGTTCCTTGGCATTCATCTATGAGCTGTGAGGAGTTCCAAAACCTCCCATTGGAAGAGAGAGATGCTGCAGACATTACCTTACATCGCCTAGCACAAAATAAAAGCTGGAGACGTTGCCAGCAGTGTCGTAGGATGATCGAGCTCACTCAAGGTTGCTACCACATGACATGCTGGTGTAGGCATGAGTTCTGTTATTCTTGTGGTGCTGAATATAGGAATGGCCAACAGACTTGTCAATGTGCCTTTTGGGATGAAGACAACAACAACACAGAAGACTTGGTCACTCAGTCTATGCAAGAATCTGAGCAATGGGCATGGGAAACATTCAATTCGCTCCCCATGATAATGGACGCATACTCAGACCAAGAGAGATCACAGTTGGCACTGATCCAGAGGTTCCTAGCTGGGGGTTTCAGTTTAAGTGACCACCCCCCCTACCAATCCCCACCCCGTTGTACAGATTCCTACGTAGATGCAATGAAAGATCTCCATCAGCTTCCTTGGCTCGAGAGGTTCGTTTCTGTGATAAGTGATAACTACTATGAAGAATACATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

519

Amino Acids

59.2

Weight (kDa)

4.7

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670
fragaria_vesca	FvH4_3g12010 FvH4_3g12010 FvH4_3g12010 FvH4_3g12010
malus_domestica	MD05G1255900.v1.1 MD10G1236000.v1.1 MD10G1236100.v1.1
prunus_persica	Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1
pyrus_communis	pycom05g23470 pycom10g19720 pycom10g19730
rosa_chinensis	RchiOBHm_Chr5g0019691
rosa_laevigata	RLG00000032461
rosa_multiflora	Rmu_co8286553.1_g000001 Rmu_sc0012330.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058420
rosa_rugosa	Rorug05G0052500 Rorug05G0052500 Rorug05G0052600
rosa_samantha	Rh5AG143300 Rh5BG141900 Rh5CG153800 Rh5DG142500
rosa_wichuraiana	Rw5G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	364
AclWI	GGATC	6 cut(s)	125, 138, 457, 470, 887, 1378
AcoI	YGGCCR	1 cut(s)	1216
AcsI	RAATTY	4 cut(s)	40, 152, 432, 855
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	1453
AfeI	AGCGCT	1 cut(s)	450
AfiI	CCNNNNNNNGG	5 cut(s)	192, 581, 829, 1045, 1402
AgeI	ACCGGT	1 cut(s)	118
AgsI	TTSAA	6 cut(s)	175, 431, 590, 599, 902, 1324
Alw21I	GWGCWC	1 cut(s)	1140
Alw26I	GTCTC	4 cut(s)	101, 571, 766, 1099
AlwI	GGATC	6 cut(s)	125, 138, 457, 470, 887, 1378
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	1502
Aor51HI	AGCGCT	1 cut(s)	450
AoxI	GGCC	2 cut(s)	334, 1216
ApeKI	GCWGC	4 cut(s)	394, 529, 948, 1061
ApoI	RAATTY	4 cut(s)	40, 152, 432, 855
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AsiGI	ACCGGT	1 cut(s)	118
Asp700I	GAANNNNTTC	2 cut(s)	69, 167
AspLEI	GCGC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	35, 133, 637
AvaI	CYCGRG	1 cut(s)	1502
BalI	TGGCCA	1 cut(s)	1218
BamHI	GGATCC	2 cut(s)	130, 462
BanII	GRGCYC	1 cut(s)	1140
BbsI	GAAGAC	2 cut(s)	1257, 1275
Bbv12I	GWGCWC	1 cut(s)	1140
BbvCI	CCTCAGC	2 cut(s)	452, 738
BbvI	GCAGC	4 cut(s)	381, 516, 935, 1048
BccI	CCATC	8 cut(s)	322, 326, 541, 617, 637, 692, 734, 1494
BclI	TGATCA	2 cut(s)	403, 642
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	4 cut(s)	101, 571, 766, 1099
BfaI	CTAG	5 cut(s)	443, 467, 915, 1085, 1397
BfmI	CTRYAG	2 cut(s)	516, 1062
BfoI	RGCGCY	1 cut(s)	452
BglII	AGATCT	2 cut(s)	520, 1480
BisI	GCNGC	4 cut(s)	395, 530, 949, 1062
BlsI	GCNGC	4 cut(s)	396, 531, 950, 1063
Bme1390I	CCNGG	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	1502
BmiI	GGNNCC	5 cut(s)	132, 303, 464, 999, 1394
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	3 cut(s)	478, 1048, 1459
BpiI	GAAGAC	2 cut(s)	1257, 1275
BpmI	CTGGAG	1 cut(s)	1123
Bpu10I	CCTNAGC	3 cut(s)	452, 579, 738
BpuEI	CTTGAG	3 cut(s)	531, 545, 1128
BpuMI	CCSGG	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	1465
BsaBI	GATNNNNATC	1 cut(s)	1485
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	743, 1001, 1496
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	5 cut(s)	192, 581, 829, 1045, 1402
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	477, 962
Bse3DI	GCAATG	3 cut(s)	676, 1310, 1479
Bse8I	GATNNNNATC	1 cut(s)	1485
BseDI	CCNNGG	3 cut(s)	743, 1001, 1496
BseGI	GGATG	5 cut(s)	337, 629, 1134, 1252, 1548
BseJI	GATNNNNATC	1 cut(s)	1485
BseLI	CCNNNNNNNGG	5 cut(s)	192, 581, 829, 1045, 1402
BseMI	GCAATG	3 cut(s)	676, 1310, 1479
BseNI	ACTGG	2 cut(s)	477, 962
BseRI	GAGGAG	2 cut(s)	314, 1040
BseXI	GCAGC	4 cut(s)	381, 516, 935, 1048
BseYI	CCCAGC	2 cut(s)	191, 1400
BsgI	GTGCAG	3 cut(s)	246, 293, 728
BshFI	GGCC	2 cut(s)	336, 1218
BshTI	ACCGGT	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	1140
BsiHKCI	CYCGRG	1 cut(s)	1502
BsiSI	CCGG	2 cut(s)	119, 367
BslFI	GGGAC	3 cut(s)	215, 494, 707
BslI	CCNNNNNNNGG	5 cut(s)	192, 581, 829, 1045, 1402
BsmAI	GTCTC	4 cut(s)	101, 571, 766, 1099
BsmBI	CGTCTC	2 cut(s)	766, 1099
BsmFI	GGGAC	3 cut(s)	215, 494, 707
BsmI	GAATGC	2 cut(s)	377, 1006
BsnI	GGCC	2 cut(s)	336, 1218
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	1502
Bsp1286I	GDGCHC	1 cut(s)	1140
Bsp1407I	TGTACA	1 cut(s)	1451
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	2 cut(s)	336, 1218
BspLI	GGNNCC	5 cut(s)	132, 303, 464, 999, 1394
BspMAI	CTGCAG	1 cut(s)	1066
BspPI	GGATC	6 cut(s)	125, 138, 457, 470, 887, 1378
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	3 cut(s)	676, 1310, 1479
BsrFI	RCCGGY	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	1451
BsrI	ACTGG	2 cut(s)	477, 962
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	743, 1001, 1496
BssT1I	CCWWGG	2 cut(s)	1001, 1496
Bst4CI	ACNGT	4 cut(s)	517, 605, 959, 1374
Bst6I	CTCTTC	2 cut(s)	60, 1044
BstAUI	TGTACA	1 cut(s)	1451
BstBAI	YACGTR	1 cut(s)	1465
BstC8I	GCNNGC	2 cut(s)	474, 1115
BstENI	CCTNNNNNAGG	1 cut(s)	827
BstF5I	GGATG	5 cut(s)	337, 629, 1134, 1252, 1548
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	451
BstMAI	GTCTC	4 cut(s)	101, 571, 766, 1099
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 551, 715, 1498
BstNSI	RCATGY	3 cut(s)	184, 476, 1167
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	516, 1062
BstSNI	TACGTA	1 cut(s)	1465
BstV1I	GCAGC	4 cut(s)	381, 516, 935, 1048
BstV2I	GAAGAC	2 cut(s)	1257, 1275
BstX2I	RGATCY	4 cut(s)	130, 462, 520, 1480
BstXI	CCANNNNNNTGG	1 cut(s)	1342
BstYI	RGATCY	4 cut(s)	130, 462, 520, 1480
BsuRI	GGCC	2 cut(s)	336, 1218
BtgZI	GCGATG	1 cut(s)	1064
BtsCI	GGATG	5 cut(s)	337, 629, 1134, 1252, 1548
BtsI	GCAGTG	2 cut(s)	765, 1124
BtsIMutI	CAGTG	5 cut(s)	165, 513, 765, 1124, 1379
Cac8I	GCNNGC	2 cut(s)	474, 1115
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	118
CseI	GACGC	1 cut(s)	1355
Csp6I	GTAC	1 cut(s)	1452
CspAI	ACCGGT	1 cut(s)	118
CviQI	GTAC	1 cut(s)	1452
EaeI	YGGCCR	1 cut(s)	1216
Eam1104I	CTCTTC	2 cut(s)	60, 1044
EarI	CTCTTC	2 cut(s)	60, 1044
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	1138
Eco105I	TACGTA	1 cut(s)	1465
Eco130I	CCWWGG	2 cut(s)	1001, 1496
Eco24I	GRGCYC	1 cut(s)	1140
Eco31I	GGTCTC	1 cut(s)	101
Eco47III	AGCGCT	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	1138
Eco57I	CTGAAG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	1502
EcoICRI	GAGCTC	1 cut(s)	1138
EcoNI	CCTNNNNNAGG	1 cut(s)	827
EcoT14I	CCWWGG	2 cut(s)	1001, 1496
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	1140
ErhI	CCWWGG	2 cut(s)	1001, 1496
Esp3I	CGTCTC	2 cut(s)	766, 1099
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	3 cut(s)	215, 494, 707
FbaI	TGATCA	2 cut(s)	403, 642
Fnu4HI	GCNGC	4 cut(s)	395, 530, 949, 1062
FokI	GGATG	5 cut(s)	344, 616, 1141, 1259, 1535
FriOI	GRGCYC	1 cut(s)	1140
Fsp4HI	GCNGC	4 cut(s)	395, 530, 949, 1062
FspBI	CTAG	5 cut(s)	443, 467, 915, 1085, 1397
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	4 cut(s)	395, 530, 949, 1062
GsaI	CCCAGC	2 cut(s)	195, 1404
GsuI	CTGGAG	1 cut(s)	1123
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	2 cut(s)	336, 1218
HapII	CCGG	2 cut(s)	119, 367
HgaI	GACGC	1 cut(s)	1355
HhaI	GCGC	1 cut(s)	451
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	7 cut(s)	203, 386, 590, 806, 975, 1295, 1457
HpaII	CCGG	2 cut(s)	119, 367
HphI	GGTGA	3 cut(s)	35, 133, 637
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	9 cut(s)	50, 391, 501, 731, 850, 940, 972, 1300, 1357
Hpy188III	TCNNGA	7 cut(s)	146, 222, 485, 524, 899, 1387, 1504
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	623
HpyAV	CCTTC	3 cut(s)	97, 118, 697
HpyCH4III	ACNGT	4 cut(s)	517, 605, 959, 1374
HpyCH4IV	ACGT	4 cut(s)	693, 759, 1108, 1464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 551, 715, 1498
HpySE526I	ACGT	4 cut(s)	693, 759, 1108, 1464
HspAI	GCGC	1 cut(s)	449
Ksp22I	TGATCA	2 cut(s)	403, 642
LmnI	GCTCC	2 cut(s)	301, 1335
Lsp1109I	GCAGC	4 cut(s)	381, 516, 935, 1048
LweI	GCATC	3 cut(s)	478, 1048, 1459
MaeI	CTAG	5 cut(s)	443, 467, 915, 1085, 1397
MaeII	ACGT	4 cut(s)	693, 759, 1108, 1464
MaeIII	GTNAC	2 cut(s)	1276, 1418
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	4 cut(s)	130, 462, 520, 1480
MhlI	GDGCHC	1 cut(s)	1140
MlsI	TGGCCA	1 cut(s)	1218
MluCI	AATT	9 cut(s)	40, 152, 225, 432, 539, 555, 855, 874, 1324
MluNI	TGGCCA	1 cut(s)	1218
MlyI	GAGTC	1 cut(s)	197
Mox20I	TGGCCA	1 cut(s)	1218
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	2 cut(s)	69, 167
MscI	TGGCCA	1 cut(s)	1218
MseI	TTAA	1 cut(s)	1415
MslI	CAYNNNNRTG	3 cut(s)	486, 1168, 1340
Msp20I	TGGCCA	1 cut(s)	1218
MspA1I	CMGCKG	1 cut(s)	948
MspI	CCGG	2 cut(s)	119, 367
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	377, 1006
MwoI	GCNNNNNNNGC	4 cut(s)	280, 551, 715, 1498
NciI	CCSGG	1 cut(s)	368
NlaIV	GGNNCC	5 cut(s)	132, 303, 464, 999, 1394
NmeAIII	GCCGAG	1 cut(s)	768
NmuCI	GTSAC	2 cut(s)	1276, 1418
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	3 cut(s)	184, 476, 1167
PaeI	GCATGC	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	1502
PcsI	WCGNNNNNNNCGW	1 cut(s)	1509
PctI	GAATGC	2 cut(s)	377, 1006
PdmI	GAANNNNTTC	2 cut(s)	69, 167
PfeI	GAWTC	6 cut(s)	386, 590, 806, 975, 1295, 1457
PflFI	GACNNNGTC	1 cut(s)	1274
PinAI	ACCGGT	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	396, 531, 950, 1063
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	1465
Psp124BI	GAGCTC	1 cut(s)	1140
PspFI	CCCAGC	2 cut(s)	191, 1400
PspN4I	GGNNCC	5 cut(s)	132, 303, 464, 999, 1394
PstI	CTGCAG	1 cut(s)	1066
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	4 cut(s)	130, 462, 520, 1480
PsyI	GACNNNGTC	1 cut(s)	1274
PvuII	CAGCTG	1 cut(s)	948
RsaI	GTAC	1 cut(s)	1453
RsaNI	GTAC	1 cut(s)	1452
RseI	CAYNNNNRTG	3 cut(s)	486, 1168, 1340
SacI	GAGCTC	1 cut(s)	1140
SaqAI	TTAA	1 cut(s)	1415
SatI	GCNGC	4 cut(s)	395, 530, 949, 1062
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	1140
SfaNI	GCATC	3 cut(s)	478, 1048, 1459
SfcI	CTRYAG	2 cut(s)	516, 1062
Sfr274I	CTCGAG	1 cut(s)	1502
SlaI	CTCGAG	1 cut(s)	1502
SmiMI	CAYNNNNRTG	3 cut(s)	486, 1168, 1340
SmlI	CTYRAG	4 cut(s)	524, 546, 1143, 1502
SmoI	CTYRAG	4 cut(s)	524, 546, 1143, 1502
SnaBI	TACGTA	1 cut(s)	1465
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	9 cut(s)	40, 152, 225, 432, 539, 555, 855, 874, 1324
SsiI	CCGC	1 cut(s)	364
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	5 cut(s)	443, 467, 915, 1085, 1397
SstI	GAGCTC	1 cut(s)	1140
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	2 cut(s)	1001, 1496
TaaI	ACNGT	4 cut(s)	517, 605, 959, 1374
TaiI	ACGT	4 cut(s)	696, 762, 1111, 1467
TaqI	TCGA	3 cut(s)	147, 1134, 1503
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	9 cut(s)	40, 152, 225, 432, 539, 555, 855, 874, 1324
TatI	WGTACW	1 cut(s)	1451
TfiI	GAWTC	6 cut(s)	386, 590, 806, 975, 1295, 1457
Tru1I	TTAA	1 cut(s)	1415
Tru9I	TTAA	1 cut(s)	1415
TscAI	CASTG	5 cut(s)	165, 520, 772, 1124, 1386
TseFI	GTSAC	2 cut(s)	1276, 1418
TseI	GCWGC	4 cut(s)	394, 529, 948, 1061
Tsp45I	GTSAC	2 cut(s)	1276, 1418
TspRI	CASTG	5 cut(s)	165, 520, 772, 1124, 1386
Tth111I	GACNNNGTC	1 cut(s)	1274
XagI	CCTNNNNNAGG	1 cut(s)	827
XapI	RAATTY	4 cut(s)	40, 152, 432, 855
XceI	RCATGY	3 cut(s)	184, 476, 1167
XhoI	CTCGAG	1 cut(s)	1502
XmnI	GAANNNNTTC	2 cut(s)	69, 167
XspI	CTAG	5 cut(s)	443, 467, 915, 1085, 1397
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.