E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 AT4G19670 |
| fragaria_vesca | FvH4_3g12010 FvH4_3g12010 FvH4_3g12010 FvH4_3g12010 |
| malus_domestica | MD05G1255900.v1.1 MD10G1236000.v1.1 MD10G1236100.v1.1 |
| prunus_persica | Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 Prupe.4G108300_v2.0.a1 |
| pyrus_communis | pycom05g23470 pycom10g19720 pycom10g19730 |
| rosa_chinensis | RchiOBHm_Chr5g0019691 |
| rosa_laevigata | RLG00000032461 |
| rosa_multiflora | Rmu_co8286553.1_g000001 Rmu_sc0012330.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00058420 |
| rosa_rugosa | Rorug05G0052500 Rorug05G0052500 Rorug05G0052600 |
| rosa_samantha | Rh5AG143300 Rh5BG141900 Rh5CG153800 Rh5DG142500 |
| rosa_wichuraiana | Rw5G012700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1547 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 230 |
| AccB1I | GGYRCC | 3 cut(s) | 753, 1018, 1220 |
| AccI | GTMKAC | 1 cut(s) | 393 |
| AciI | CCGC | 1 cut(s) | 385 |
| AclWI | GGATC | 3 cut(s) | 478, 491, 1393 |
| AcoI | YGGCCR | 1 cut(s) | 1195 |
| AcsI | RAATTY | 1 cut(s) | 61 |
| AcuI | CTGAAG | 2 cut(s) | 636, 915 |
| AfaI | GTAC | 1 cut(s) | 1477 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 601, 602, 1066, 1417 |
| AgsI | TTSAA | 5 cut(s) | 196, 509, 611, 620, 1035 |
| AjnI | CCWGG | 1 cut(s) | 1104 |
| Alw26I | GTCTC | 1 cut(s) | 592 |
| AlwI | GGATC | 3 cut(s) | 478, 491, 1393 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 410 |
| Ama87I | CYCGRG | 2 cut(s) | 226, 1526 |
| AoxI | GGCC | 2 cut(s) | 1195, 1455 |
| ApeKI | GCWGC | 2 cut(s) | 269, 969 |
| ApoI | RAATTY | 1 cut(s) | 61 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 90, 188 |
| AspLEI | GCGC | 1 cut(s) | 1111 |
| AspS9I | GGNCC | 1 cut(s) | 1456 |
| AsuC2I | CCSGG | 1 cut(s) | 389 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 193, 1430 |
| AsuII | TTCGAA | 2 cut(s) | 94, 825 |
| AvaI | CYCGRG | 2 cut(s) | 226, 1526 |
| BaeGI | GKGCMC | 1 cut(s) | 758 |
| BalI | TGGCCA | 1 cut(s) | 1197 |
| BamHI | GGATCC | 1 cut(s) | 483 |
| BanI | GGYRCC | 3 cut(s) | 753, 1018, 1220 |
| BbvCI | CCTCAGC | 1 cut(s) | 759 |
| BbvI | GCAGC | 2 cut(s) | 281, 956 |
| BccI | CCATC | 6 cut(s) | 343, 347, 562, 638, 713, 755 |
| BceAI | ACGGC | 1 cut(s) | 1128 |
| BciT130I | CCWGG | 1 cut(s) | 1106 |
| BclI | TGATCA | 3 cut(s) | 424, 1353, 1435 |
| BcnI | CCSGG | 1 cut(s) | 389 |
| BcoDI | GTCTC | 1 cut(s) | 592 |
| BfaI | CTAG | 5 cut(s) | 69, 341, 488, 936, 1412 |
| BfmI | CTRYAG | 2 cut(s) | 537, 1083 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 572, 1194 |
| BglII | AGATCT | 2 cut(s) | 541, 1504 |
| BisI | GCNGC | 2 cut(s) | 270, 970 |
| BlpI | GCTNAGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 2 cut(s) | 271, 971 |
| Bme1390I | CCNGG | 2 cut(s) | 389, 1106 |
| BmeT110I | CYCGRG | 2 cut(s) | 226, 1526 |
| BmgT120I | GGNCC | 1 cut(s) | 1456 |
| BmiI | GGNNCC | 6 cut(s) | 324, 485, 755, 1020, 1222, 1409 |
| BmrFI | CCNGG | 2 cut(s) | 389, 1106 |
| BmrI | ACTGGG | 1 cut(s) | 222 |
| BmsI | GCATC | 4 cut(s) | 758, 1351, 1471, 1483 |
| BmuI | ACTGGG | 1 cut(s) | 222 |
| BpmI | CTGGAG | 1 cut(s) | 1144 |
| Bpu10I | CCTNAGC | 2 cut(s) | 600, 759 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 6 |
| Bpu14I | TTCGAA | 2 cut(s) | 94, 825 |
| BpuEI | CTTGAG | 3 cut(s) | 723, 866, 1149 |
| BpuMI | CCSGG | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 2 cut(s) | 1022, 1520 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 601, 602, 1066, 1417 |
| Bse118I | RCCGGY | 3 cut(s) | 497, 1188, 1453 |
| Bse1I | ACTGG | 4 cut(s) | 217, 983, 1071, 1395 |
| Bse3DI | GCAATG | 1 cut(s) | 1325 |
| BseBI | CCWGG | 1 cut(s) | 1106 |
| BseDI | CCNNGG | 2 cut(s) | 1022, 1520 |
| BseGI | GGATG | 4 cut(s) | 358, 1155, 1273, 1366 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 601, 602, 1066, 1417 |
| BseMI | GCAATG | 1 cut(s) | 1325 |
| BseMII | CTCAG | 7 cut(s) | 402, 464, 773, 778, 1305, 1310, 1362 |
| BseNI | ACTGG | 4 cut(s) | 217, 983, 1071, 1395 |
| BseRI | GAGGAG | 5 cut(s) | 335, 455, 1061, 1455, 1458 |
| BseSI | GKGCMC | 1 cut(s) | 758 |
| BseXI | GCAGC | 2 cut(s) | 281, 956 |
| BseYI | CCCAGC | 1 cut(s) | 1415 |
| BsgI | GTGCAG | 2 cut(s) | 314, 392 |
| Bsh1285I | CGRYCG | 1 cut(s) | 916 |
| BshFI | GGCC | 2 cut(s) | 1197, 1457 |
| BshNI | GGYRCC | 3 cut(s) | 753, 1018, 1220 |
| BsiEI | CGRYCG | 1 cut(s) | 916 |
| BsiHKCI | CYCGRG | 2 cut(s) | 226, 1526 |
| BsiSI | CCGG | 4 cut(s) | 388, 498, 1189, 1454 |
| BslFI | GGGAC | 3 cut(s) | 236, 515, 728 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 601, 602, 1066, 1417 |
| BsmAI | GTCTC | 1 cut(s) | 592 |
| BsmFI | GGGAC | 3 cut(s) | 236, 515, 728 |
| BsmI | GAATGC | 3 cut(s) | 398, 800, 1027 |
| BsnI | GGCC | 2 cut(s) | 1197, 1457 |
| BsoBI | CYCGRG | 2 cut(s) | 226, 1526 |
| Bsp119I | TTCGAA | 2 cut(s) | 94, 825 |
| Bsp1286I | GDGCHC | 1 cut(s) | 758 |
| Bsp1407I | TGTACA | 1 cut(s) | 1475 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 6 |
| BspACI | CCGC | 1 cut(s) | 385 |
| BspANI | GGCC | 2 cut(s) | 1197, 1457 |
| BspCNI | CTCAG | 7 cut(s) | 403, 465, 772, 777, 1306, 1309, 1363 |
| BspHI | TCATGA | 1 cut(s) | 682 |
| BspLI | GGNNCC | 6 cut(s) | 324, 485, 755, 1020, 1222, 1409 |
| BspMAI | CTGCAG | 1 cut(s) | 1087 |
| BspPI | GGATC | 3 cut(s) | 478, 491, 1393 |
| BspT104I | TTCGAA | 2 cut(s) | 94, 825 |
| BspT107I | GGYRCC | 3 cut(s) | 753, 1018, 1220 |
| BsrDI | GCAATG | 1 cut(s) | 1325 |
| BsrFI | RCCGGY | 3 cut(s) | 497, 1188, 1453 |
| BsrGI | TGTACA | 1 cut(s) | 1475 |
| BsrI | ACTGG | 4 cut(s) | 217, 983, 1071, 1395 |
| BssAI | RCCGGY | 3 cut(s) | 497, 1188, 1453 |
| BssECI | CCNNGG | 2 cut(s) | 1022, 1520 |
| BssNAI | GTATAC | 1 cut(s) | 394 |
| BssT1I | CCWWGG | 2 cut(s) | 1022, 1520 |
| Bst1107I | GTATAC | 1 cut(s) | 394 |
| Bst2UI | CCWGG | 1 cut(s) | 1106 |
| Bst4CI | ACNGT | 1 cut(s) | 1245 |
| Bst6I | CTCTTC | 2 cut(s) | 81, 1065 |
| BstAUI | TGTACA | 1 cut(s) | 1475 |
| BstBI | TTCGAA | 2 cut(s) | 94, 825 |
| BstC8I | GCNNGC | 2 cut(s) | 495, 1136 |
| BstDEI | CTNAG | 9 cut(s) | 6, 411, 473, 600, 759, 764, 1296, 1314, 1371 |
| BstF5I | GGATG | 4 cut(s) | 358, 1155, 1273, 1366 |
| BstHHI | GCGC | 1 cut(s) | 1111 |
| BstMAI | GTCTC | 1 cut(s) | 592 |
| BstMCI | CGRYCG | 1 cut(s) | 916 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 301, 572, 1135, 1140, 1194, 1522 |
| BstNI | CCWGG | 1 cut(s) | 1106 |
| BstNSI | RCATGY | 3 cut(s) | 457, 497, 1188 |
| BstSCI | CCNGG | 2 cut(s) | 387, 1104 |
| BstSFI | CTRYAG | 2 cut(s) | 537, 1083 |
| BstSLI | GKGCMC | 1 cut(s) | 758 |
| BstV1I | GCAGC | 2 cut(s) | 281, 956 |
| BstX2I | RGATCY | 3 cut(s) | 483, 541, 1504 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1357 |
| BstYI | RGATCY | 3 cut(s) | 483, 541, 1504 |
| BstZ17I | GTATAC | 1 cut(s) | 394 |
| BsuRI | GGCC | 2 cut(s) | 1197, 1457 |
| BtgZI | GCGATG | 2 cut(s) | 654, 1085 |
| BtsCI | GGATG | 4 cut(s) | 358, 1155, 1273, 1366 |
| BtsI | GCAGTG | 2 cut(s) | 786, 1145 |
| BtsIMutI | CAGTG | 6 cut(s) | 344, 470, 786, 1064, 1145, 1394 |
| Cac8I | GCNNGC | 2 cut(s) | 495, 1136 |
| CaiI | CAGNNNCTG | 1 cut(s) | 410 |
| CciI | TCATGA | 1 cut(s) | 682 |
| CfoI | GCGC | 1 cut(s) | 1111 |
| Cfr10I | RCCGGY | 3 cut(s) | 497, 1188, 1453 |
| Cfr13I | GGNCC | 1 cut(s) | 1456 |
| Csp6I | GTAC | 1 cut(s) | 1476 |
| CviQI | GTAC | 1 cut(s) | 1476 |
| DdeI | CTNAG | 9 cut(s) | 6, 411, 473, 600, 759, 764, 1296, 1314, 1371 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 230 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 230 |
| EaeI | YGGCCR | 1 cut(s) | 1195 |
| Eam1104I | CTCTTC | 2 cut(s) | 81, 1065 |
| EarI | CTCTTC | 2 cut(s) | 81, 1065 |
| EciI | GGCGGA | 1 cut(s) | 374 |
| Eco130I | CCWWGG | 2 cut(s) | 1022, 1520 |
| Eco57I | CTGAAG | 2 cut(s) | 636, 915 |
| Eco88I | CYCGRG | 2 cut(s) | 226, 1526 |
| EcoRII | CCWGG | 1 cut(s) | 1104 |
| EcoT14I | CCWWGG | 2 cut(s) | 1022, 1520 |
| ErhI | CCWWGG | 2 cut(s) | 1022, 1520 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 150, 182, 176, 208 |
| FaqI | GGGAC | 3 cut(s) | 236, 515, 728 |
| FauNDI | CATATG | 1 cut(s) | 712 |
| FbaI | TGATCA | 3 cut(s) | 424, 1353, 1435 |
| FblI | GTMKAC | 1 cut(s) | 393 |
| Fnu4HI | GCNGC | 2 cut(s) | 270, 970 |
| FokI | GGATG | 4 cut(s) | 365, 1162, 1280, 1373 |
| Fsp4HI | GCNGC | 2 cut(s) | 270, 970 |
| FspBI | CTAG | 5 cut(s) | 69, 341, 488, 936, 1412 |
| GlaI | GCGC | 1 cut(s) | 1110 |
| GluI | GCNGC | 2 cut(s) | 270, 970 |
| GsaI | CCCAGC | 1 cut(s) | 1419 |
| GsuI | CTGGAG | 1 cut(s) | 1144 |
| HaeIII | GGCC | 2 cut(s) | 1197, 1457 |
| HapII | CCGG | 4 cut(s) | 388, 498, 1189, 1454 |
| HhaI | GCGC | 1 cut(s) | 1111 |
| Hin6I | GCGC | 1 cut(s) | 1109 |
| HinP1I | GCGC | 1 cut(s) | 1109 |
| HincII | GTYRAC | 1 cut(s) | 1241 |
| HindII | GTYRAC | 1 cut(s) | 1241 |
| HindIII | AAGCTT | 2 cut(s) | 510, 1157 |
| HinfI | GANTC | 9 cut(s) | 52, 152, 224, 407, 611, 827, 996, 1079, 1310 |
| HpaII | CCGG | 4 cut(s) | 388, 498, 1189, 1454 |
| HphI | GGTGA | 3 cut(s) | 56, 193, 1430 |
| Hpy166II | GTNNAC | 3 cut(s) | 394, 695, 1241 |
| Hpy188I | TCNGA | 9 cut(s) | 412, 522, 581, 767, 871, 922, 961, 1315, 1372 |
| Hpy188III | TCNNGA | 6 cut(s) | 167, 243, 506, 545, 683, 1528 |
| Hpy8I | GTNNAC | 3 cut(s) | 394, 695, 1241 |
| HpyAV | CCTTC | 5 cut(s) | 118, 660, 818, 1229, 1270 |
| HpyCH4III | ACNGT | 1 cut(s) | 1245 |
| HpyCH4V | TGCA | 8 cut(s) | 295, 373, 771, 798, 972, 990, 1085, 1306 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 301, 572, 1135, 1140, 1194, 1522 |
| HpyF3I | CTNAG | 9 cut(s) | 6, 411, 473, 600, 759, 764, 1296, 1314, 1371 |
| HspAI | GCGC | 1 cut(s) | 1109 |
| Ksp22I | TGATCA | 3 cut(s) | 424, 1353, 1435 |
| LmnI | GCTCC | 1 cut(s) | 322 |
| Lsp1109I | GCAGC | 2 cut(s) | 281, 956 |
| LweI | GCATC | 4 cut(s) | 758, 1351, 1471, 1483 |
| MaeI | CTAG | 5 cut(s) | 69, 341, 488, 936, 1412 |
| MaeIII | GTNAC | 1 cut(s) | 1291 |
| MflI | RGATCY | 3 cut(s) | 483, 541, 1504 |
| MhlI | GDGCHC | 1 cut(s) | 758 |
| MlsI | TGGCCA | 1 cut(s) | 1197 |
| MluCI | AATT | 6 cut(s) | 61, 246, 285, 560, 895, 1339 |
| MluNI | TGGCCA | 1 cut(s) | 1197 |
| MlyI | GAGTC | 2 cut(s) | 161, 218 |
| Mox20I | TGGCCA | 1 cut(s) | 1197 |
| MroXI | GAANNNNTTC | 2 cut(s) | 90, 188 |
| MscI | TGGCCA | 1 cut(s) | 1197 |
| MseI | TTAA | 3 cut(s) | 1155, 1338, 1430 |
| MslI | CAYNNNNRTG | 4 cut(s) | 206, 1004, 1189, 1355 |
| Msp20I | TGGCCA | 1 cut(s) | 1197 |
| MspA1I | CMGCKG | 1 cut(s) | 969 |
| MspI | CCGG | 4 cut(s) | 388, 498, 1189, 1454 |
| MspR9I | CCNGG | 2 cut(s) | 389, 1106 |
| Mva1269I | GAATGC | 3 cut(s) | 398, 800, 1027 |
| MvaI | CCWGG | 1 cut(s) | 1106 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 301, 572, 1135, 1140, 1194, 1522 |
| NciI | CCSGG | 1 cut(s) | 389 |
| NdeI | CATATG | 1 cut(s) | 712 |
| NlaIV | GGNNCC | 6 cut(s) | 324, 485, 755, 1020, 1222, 1409 |
| NmuCI | GTSAC | 1 cut(s) | 1291 |
| NspI | RCATGY | 3 cut(s) | 457, 497, 1188 |
| NspV | TTCGAA | 2 cut(s) | 94, 825 |
| PaeI | GCATGC | 1 cut(s) | 497 |
| PaeR7I | CTCGAG | 2 cut(s) | 226, 1526 |
| PagI | TCATGA | 1 cut(s) | 682 |
| PctI | GAATGC | 3 cut(s) | 398, 800, 1027 |
| PdmI | GAANNNNTTC | 2 cut(s) | 90, 188 |
| PfeI | GAWTC | 7 cut(s) | 52, 407, 611, 827, 996, 1079, 1310 |
| PkrI | GCNGC | 2 cut(s) | 271, 971 |
| Ple19I | CGATCG | 1 cut(s) | 916 |
| PleI | GAGTC | 2 cut(s) | 160, 218 |
| PpsI | GAGTC | 2 cut(s) | 160, 218 |
| PsiI | TTATAA | 1 cut(s) | 1547 |
| Psp6I | CCWGG | 1 cut(s) | 1104 |
| PspFI | CCCAGC | 1 cut(s) | 1415 |
| PspGI | CCWGG | 1 cut(s) | 1104 |
| PspN4I | GGNNCC | 6 cut(s) | 324, 485, 755, 1020, 1222, 1409 |
| PspPI | GGNCC | 1 cut(s) | 1456 |
| PspXI | VCTCGAGB | 1 cut(s) | 226 |
| PstI | CTGCAG | 1 cut(s) | 1087 |
| PstNI | CAGNNNCTG | 1 cut(s) | 410 |
| PsuI | RGATCY | 3 cut(s) | 483, 541, 1504 |
| PvuI | CGATCG | 1 cut(s) | 916 |
| PvuII | CAGCTG | 1 cut(s) | 969 |
| RsaI | GTAC | 1 cut(s) | 1477 |
| RsaNI | GTAC | 1 cut(s) | 1476 |
| RseI | CAYNNNNRTG | 4 cut(s) | 206, 1004, 1189, 1355 |
| SaqAI | TTAA | 3 cut(s) | 1155, 1338, 1430 |
| SatI | GCNGC | 2 cut(s) | 270, 970 |
| Sau96I | GGNCC | 1 cut(s) | 1456 |
| SchI | GAGTC | 2 cut(s) | 161, 218 |
| ScrFI | CCNGG | 2 cut(s) | 389, 1106 |
| SduI | GDGCHC | 1 cut(s) | 758 |
| SfaNI | GCATC | 4 cut(s) | 758, 1351, 1471, 1483 |
| SfcI | CTRYAG | 2 cut(s) | 537, 1083 |
| Sfr274I | CTCGAG | 2 cut(s) | 226, 1526 |
| SfuI | TTCGAA | 2 cut(s) | 94, 825 |
| SlaI | CTCGAG | 2 cut(s) | 226, 1526 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 206, 1004, 1189, 1355 |
| SmlI | CTYRAG | 5 cut(s) | 226, 738, 845, 1164, 1526 |
| SmoI | CTYRAG | 5 cut(s) | 226, 738, 845, 1164, 1526 |
| SphI | GCATGC | 1 cut(s) | 497 |
| Sse9I | AATT | 6 cut(s) | 61, 246, 285, 560, 895, 1339 |
| SsiI | CCGC | 1 cut(s) | 385 |
| SspI | AATATT | 1 cut(s) | 859 |
| SspMI | CTAG | 5 cut(s) | 69, 341, 488, 936, 1412 |
| StyD4I | CCNGG | 2 cut(s) | 387, 1104 |
| StyI | CCWWGG | 2 cut(s) | 1022, 1520 |
| TaaI | ACNGT | 1 cut(s) | 1245 |
| TaqI | TCGA | 5 cut(s) | 94, 227, 825, 912, 1527 |
| TaqII | GACCGA | 1 cut(s) | 564 |
| TasI | AATT | 6 cut(s) | 61, 246, 285, 560, 895, 1339 |
| TatI | WGTACW | 1 cut(s) | 1475 |
| TfiI | GAWTC | 7 cut(s) | 52, 407, 611, 827, 996, 1079, 1310 |
| Tru1I | TTAA | 3 cut(s) | 1155, 1338, 1430 |
| Tru9I | TTAA | 3 cut(s) | 1155, 1338, 1430 |
| TscAI | CASTG | 6 cut(s) | 351, 477, 793, 1071, 1145, 1401 |
| TseFI | GTSAC | 1 cut(s) | 1291 |
| TseI | GCWGC | 2 cut(s) | 269, 969 |
| Tsp45I | GTSAC | 1 cut(s) | 1291 |
| TspDTI | ATGAA | 8 cut(s) | 44, 150, 686, 936, 988, 1284, 1514, 1578 |
| TspRI | CASTG | 6 cut(s) | 351, 477, 793, 1071, 1145, 1401 |
| XapI | RAATTY | 1 cut(s) | 61 |
| XceI | RCATGY | 3 cut(s) | 457, 497, 1188 |
| XhoI | CTCGAG | 2 cut(s) | 226, 1526 |
| XmiI | GTMKAC | 1 cut(s) | 393 |
| XmnI | GAANNNNTTC | 2 cut(s) | 90, 188 |
| XspI | CTAG | 5 cut(s) | 69, 341, 488, 936, 1412 |