FvH4_3g12010

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
7098541 .. 7102462
3922 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12010.t1

Sequence Viewer

Length: 1581 bp
ATGGCTGAGCTGTTGTGGGAAATGGAGGGTCAGGTATTGTTTGGTGATGAGATTCATGTGAATTTAGCTAGAGAGGAAGATGAGGAAGAGTTTCGAAGTTGTTGTGAAGATGATGAGGTTTGGAAGGAGAATGATGAACCTGTGAAAGTGGAGTCAAAAGATGATCTTGATGAGTTTTCGGTGAAGATGTTCTTCAAGGGCATTTCTATGACTGGGTTTGGGGACTCGAGTGTCGGGCTTTCTGGAATTGGAGTTGTTATGGAAAGAGCAGCCAATGTTCCTGTAATTCAGGTGCAGAAAAGGCTTGATTTTTATGTGGAGGAGCCTGTGGCTGACTATCTAGCACTGATGGATGGTTTAGTGGAGGCTGTGCAGAATAATGTCCGCCGGGTATACGCATTCACAGATTCTGAGCTTCTCTATGATCAGGTATCAAATGAGGAGAAACTTGACATGCCCCTCCTTGTAGCACTGAGGGAAAGGATCCTAGAGCATGCCGGTAATCTTGAAGCTTTTGTTCTGAAACTTGTCCCCACTATAGATCTTGACCGACCATCAAAATTAGCCCAAGTGGCAATCGGAGTTGTCTCTTTCCCTGCTAAGGGCGTTGAATCACTTGAAACCTGTTCCATCTGTTGCGATGATAAACCTTCAGTAATGATGATCGCTATGAAATGTTCTCATGAGTTCTGTTCACATTGTATGAGGACATATGTTGATGGGAAGATACAAGCCTCTCAAGTCCCCATCAGGTGCCCTCAGCTCAGATGCAAGTATTACATCTCCACTGCTGAATGCAAATCTTTCCTTCCACTCACTTCTTTCGAATCATTGGAAAAAGCCCTTGAGGAAGCAAATATTCTACATTCGGATAGATTTTACTGCCCATTTCCAAATTGTTCTGTCCTGCTCGATCGTTCTGAATGTTCTTCAGCTAGTGAAAGTTCATCAAGTCAGTCAGATAACAGCTGCATGGAATGTCCAGTTTGCAAGAGATTCATCTGTGTGGATTGTGGGGTGCCTTGGCATTCTTCAATGAGCTGTGAGGAGTTCCAAAACCTCCCACTGGAAGAGAGAGATTCTGCAGATATTACCTTACATCGCCTGGCGCAAAATAAAAGCTGGAGGCGTTGCCAGCAGTGCCGTAGGATGATTAAGCTTACTCAAGGTTGCTACCACATGACATGCCGGTGTGGCCATGAGTTCTGTTATTCTTGTGGTGCCGAATATAGAGAAGGTCAACAGTCGTGTCAATGTGCCTTCTGGGATGAAGATAACCAAGAAGATTTGGTCACTCAGTCTATGCAAGAATCTGAGCAATGGGCATGGGAAACATTTAATTCACTTCCCATGATCATGGATGCTTACTCTGAGCAAGAGAGATCACAACTGGCACTGATCCAAAGGTTCCTAGCTGGGGGTTTCAGTTTAAGTGATCACCACCCTTACCAACCGGCCCAATCTCCTCCTCGTTGTACAGATGCCTATGTAGATGCCATGAAAGATCTCCACCAGCTTCCTTGGCTCGAGAGGTTTGTTTCTGTTATAAGTGATAACTACTATGAAGAATATATCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

60.15

Weight (kDa)

4.61

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 78 - 178 2e-07 Reverse transcriptase-like
IBR PF01485 281 - 348 1.3e-07 IBR domain, a half RING-finger domain
IBR PF01485 368 - 417 1e-08 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1547
AasI GACNNNNNNGTC 1 cut(s) 230
AccB1I GGYRCC 3 cut(s) 753, 1018, 1220
AccI GTMKAC 1 cut(s) 393
AciI CCGC 1 cut(s) 385
AclWI GGATC 3 cut(s) 478, 491, 1393
AcoI YGGCCR 1 cut(s) 1195
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 2 cut(s) 636, 915
AfaI GTAC 1 cut(s) 1477
AfiI CCNNNNNNNGG 4 cut(s) 601, 602, 1066, 1417
AgsI TTSAA 5 cut(s) 196, 509, 611, 620, 1035
AjnI CCWGG 1 cut(s) 1104
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 3 cut(s) 478, 491, 1393
AlwNI CAGNNNCTG 1 cut(s) 410
Ama87I CYCGRG 2 cut(s) 226, 1526
AoxI GGCC 2 cut(s) 1195, 1455
ApeKI GCWGC 2 cut(s) 269, 969
ApoI RAATTY 1 cut(s) 61
Asp700I GAANNNNTTC 2 cut(s) 90, 188
AspLEI GCGC 1 cut(s) 1111
AspS9I GGNCC 1 cut(s) 1456
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 56, 193, 1430
AsuII TTCGAA 2 cut(s) 94, 825
AvaI CYCGRG 2 cut(s) 226, 1526
BaeGI GKGCMC 1 cut(s) 758
BalI TGGCCA 1 cut(s) 1197
BamHI GGATCC 1 cut(s) 483
BanI GGYRCC 3 cut(s) 753, 1018, 1220
BbvCI CCTCAGC 1 cut(s) 759
BbvI GCAGC 2 cut(s) 281, 956
BccI CCATC 6 cut(s) 343, 347, 562, 638, 713, 755
BceAI ACGGC 1 cut(s) 1128
BciT130I CCWGG 1 cut(s) 1106
BclI TGATCA 3 cut(s) 424, 1353, 1435
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 5 cut(s) 69, 341, 488, 936, 1412
BfmI CTRYAG 2 cut(s) 537, 1083
BglI GCCNNNNNGGC 2 cut(s) 572, 1194
BglII AGATCT 2 cut(s) 541, 1504
BisI GCNGC 2 cut(s) 270, 970
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 271, 971
Bme1390I CCNGG 2 cut(s) 389, 1106
BmeT110I CYCGRG 2 cut(s) 226, 1526
BmgT120I GGNCC 1 cut(s) 1456
BmiI GGNNCC 6 cut(s) 324, 485, 755, 1020, 1222, 1409
BmrFI CCNGG 2 cut(s) 389, 1106
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 4 cut(s) 758, 1351, 1471, 1483
BmuI ACTGGG 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 1144
Bpu10I CCTNAGC 2 cut(s) 600, 759
Bpu1102I GCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 2 cut(s) 94, 825
BpuEI CTTGAG 3 cut(s) 723, 866, 1149
BpuMI CCSGG 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 1022, 1520
Bsc4I CCNNNNNNNGG 4 cut(s) 601, 602, 1066, 1417
Bse118I RCCGGY 3 cut(s) 497, 1188, 1453
Bse1I ACTGG 4 cut(s) 217, 983, 1071, 1395
Bse3DI GCAATG 1 cut(s) 1325
BseBI CCWGG 1 cut(s) 1106
BseDI CCNNGG 2 cut(s) 1022, 1520
BseGI GGATG 4 cut(s) 358, 1155, 1273, 1366
BseLI CCNNNNNNNGG 4 cut(s) 601, 602, 1066, 1417
BseMI GCAATG 1 cut(s) 1325
BseMII CTCAG 7 cut(s) 402, 464, 773, 778, 1305, 1310, 1362
BseNI ACTGG 4 cut(s) 217, 983, 1071, 1395
BseRI GAGGAG 5 cut(s) 335, 455, 1061, 1455, 1458
BseSI GKGCMC 1 cut(s) 758
BseXI GCAGC 2 cut(s) 281, 956
BseYI CCCAGC 1 cut(s) 1415
BsgI GTGCAG 2 cut(s) 314, 392
Bsh1285I CGRYCG 1 cut(s) 916
BshFI GGCC 2 cut(s) 1197, 1457
BshNI GGYRCC 3 cut(s) 753, 1018, 1220
BsiEI CGRYCG 1 cut(s) 916
BsiHKCI CYCGRG 2 cut(s) 226, 1526
BsiSI CCGG 4 cut(s) 388, 498, 1189, 1454
BslFI GGGAC 3 cut(s) 236, 515, 728
BslI CCNNNNNNNGG 4 cut(s) 601, 602, 1066, 1417
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 3 cut(s) 236, 515, 728
BsmI GAATGC 3 cut(s) 398, 800, 1027
BsnI GGCC 2 cut(s) 1197, 1457
BsoBI CYCGRG 2 cut(s) 226, 1526
Bsp119I TTCGAA 2 cut(s) 94, 825
Bsp1286I GDGCHC 1 cut(s) 758
Bsp1407I TGTACA 1 cut(s) 1475
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 1 cut(s) 385
BspANI GGCC 2 cut(s) 1197, 1457
BspCNI CTCAG 7 cut(s) 403, 465, 772, 777, 1306, 1309, 1363
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 6 cut(s) 324, 485, 755, 1020, 1222, 1409
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 3 cut(s) 478, 491, 1393
BspT104I TTCGAA 2 cut(s) 94, 825
BspT107I GGYRCC 3 cut(s) 753, 1018, 1220
BsrDI GCAATG 1 cut(s) 1325
BsrFI RCCGGY 3 cut(s) 497, 1188, 1453
BsrGI TGTACA 1 cut(s) 1475
BsrI ACTGG 4 cut(s) 217, 983, 1071, 1395
BssAI RCCGGY 3 cut(s) 497, 1188, 1453
BssECI CCNNGG 2 cut(s) 1022, 1520
BssNAI GTATAC 1 cut(s) 394
BssT1I CCWWGG 2 cut(s) 1022, 1520
Bst1107I GTATAC 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 1106
Bst4CI ACNGT 1 cut(s) 1245
Bst6I CTCTTC 2 cut(s) 81, 1065
BstAUI TGTACA 1 cut(s) 1475
BstBI TTCGAA 2 cut(s) 94, 825
BstC8I GCNNGC 2 cut(s) 495, 1136
BstDEI CTNAG 9 cut(s) 6, 411, 473, 600, 759, 764, 1296, 1314, 1371
BstF5I GGATG 4 cut(s) 358, 1155, 1273, 1366
BstHHI GCGC 1 cut(s) 1111
BstMAI GTCTC 1 cut(s) 592
BstMCI CGRYCG 1 cut(s) 916
BstMWI GCNNNNNNNGC 6 cut(s) 301, 572, 1135, 1140, 1194, 1522
BstNI CCWGG 1 cut(s) 1106
BstNSI RCATGY 3 cut(s) 457, 497, 1188
BstSCI CCNGG 2 cut(s) 387, 1104
BstSFI CTRYAG 2 cut(s) 537, 1083
BstSLI GKGCMC 1 cut(s) 758
BstV1I GCAGC 2 cut(s) 281, 956
BstX2I RGATCY 3 cut(s) 483, 541, 1504
BstXI CCANNNNNNTGG 1 cut(s) 1357
BstYI RGATCY 3 cut(s) 483, 541, 1504
BstZ17I GTATAC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 1197, 1457
BtgZI GCGATG 2 cut(s) 654, 1085
BtsCI GGATG 4 cut(s) 358, 1155, 1273, 1366
BtsI GCAGTG 2 cut(s) 786, 1145
BtsIMutI CAGTG 6 cut(s) 344, 470, 786, 1064, 1145, 1394
Cac8I GCNNGC 2 cut(s) 495, 1136
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 1 cut(s) 682
CfoI GCGC 1 cut(s) 1111
Cfr10I RCCGGY 3 cut(s) 497, 1188, 1453
Cfr13I GGNCC 1 cut(s) 1456
Csp6I GTAC 1 cut(s) 1476
CviQI GTAC 1 cut(s) 1476
DdeI CTNAG 9 cut(s) 6, 411, 473, 600, 759, 764, 1296, 1314, 1371
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 1195
Eam1104I CTCTTC 2 cut(s) 81, 1065
EarI CTCTTC 2 cut(s) 81, 1065
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 1022, 1520
Eco57I CTGAAG 2 cut(s) 636, 915
Eco88I CYCGRG 2 cut(s) 226, 1526
EcoRII CCWGG 1 cut(s) 1104
EcoT14I CCWWGG 2 cut(s) 1022, 1520
ErhI CCWWGG 2 cut(s) 1022, 1520
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 176, 208
FaqI GGGAC 3 cut(s) 236, 515, 728
FauNDI CATATG 1 cut(s) 712
FbaI TGATCA 3 cut(s) 424, 1353, 1435
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 270, 970
FokI GGATG 4 cut(s) 365, 1162, 1280, 1373
Fsp4HI GCNGC 2 cut(s) 270, 970
FspBI CTAG 5 cut(s) 69, 341, 488, 936, 1412
GlaI GCGC 1 cut(s) 1110
GluI GCNGC 2 cut(s) 270, 970
GsaI CCCAGC 1 cut(s) 1419
GsuI CTGGAG 1 cut(s) 1144
HaeIII GGCC 2 cut(s) 1197, 1457
HapII CCGG 4 cut(s) 388, 498, 1189, 1454
HhaI GCGC 1 cut(s) 1111
Hin6I GCGC 1 cut(s) 1109
HinP1I GCGC 1 cut(s) 1109
HincII GTYRAC 1 cut(s) 1241
HindII GTYRAC 1 cut(s) 1241
HindIII AAGCTT 2 cut(s) 510, 1157
HinfI GANTC 9 cut(s) 52, 152, 224, 407, 611, 827, 996, 1079, 1310
HpaII CCGG 4 cut(s) 388, 498, 1189, 1454
HphI GGTGA 3 cut(s) 56, 193, 1430
Hpy166II GTNNAC 3 cut(s) 394, 695, 1241
Hpy188I TCNGA 9 cut(s) 412, 522, 581, 767, 871, 922, 961, 1315, 1372
Hpy188III TCNNGA 6 cut(s) 167, 243, 506, 545, 683, 1528
Hpy8I GTNNAC 3 cut(s) 394, 695, 1241
HpyAV CCTTC 5 cut(s) 118, 660, 818, 1229, 1270
HpyCH4III ACNGT 1 cut(s) 1245
HpyCH4V TGCA 8 cut(s) 295, 373, 771, 798, 972, 990, 1085, 1306
HpyF10VI GCNNNNNNNGC 6 cut(s) 301, 572, 1135, 1140, 1194, 1522
HpyF3I CTNAG 9 cut(s) 6, 411, 473, 600, 759, 764, 1296, 1314, 1371
HspAI GCGC 1 cut(s) 1109
Ksp22I TGATCA 3 cut(s) 424, 1353, 1435
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 2 cut(s) 281, 956
LweI GCATC 4 cut(s) 758, 1351, 1471, 1483
MaeI CTAG 5 cut(s) 69, 341, 488, 936, 1412
MaeIII GTNAC 1 cut(s) 1291
MflI RGATCY 3 cut(s) 483, 541, 1504
MhlI GDGCHC 1 cut(s) 758
MlsI TGGCCA 1 cut(s) 1197
MluCI AATT 6 cut(s) 61, 246, 285, 560, 895, 1339
MluNI TGGCCA 1 cut(s) 1197
MlyI GAGTC 2 cut(s) 161, 218
Mox20I TGGCCA 1 cut(s) 1197
MroXI GAANNNNTTC 2 cut(s) 90, 188
MscI TGGCCA 1 cut(s) 1197
MseI TTAA 3 cut(s) 1155, 1338, 1430
MslI CAYNNNNRTG 4 cut(s) 206, 1004, 1189, 1355
Msp20I TGGCCA 1 cut(s) 1197
MspA1I CMGCKG 1 cut(s) 969
MspI CCGG 4 cut(s) 388, 498, 1189, 1454
MspR9I CCNGG 2 cut(s) 389, 1106
Mva1269I GAATGC 3 cut(s) 398, 800, 1027
MvaI CCWGG 1 cut(s) 1106
MwoI GCNNNNNNNGC 6 cut(s) 301, 572, 1135, 1140, 1194, 1522
NciI CCSGG 1 cut(s) 389
NdeI CATATG 1 cut(s) 712
NlaIV GGNNCC 6 cut(s) 324, 485, 755, 1020, 1222, 1409
NmuCI GTSAC 1 cut(s) 1291
NspI RCATGY 3 cut(s) 457, 497, 1188
NspV TTCGAA 2 cut(s) 94, 825
PaeI GCATGC 1 cut(s) 497
PaeR7I CTCGAG 2 cut(s) 226, 1526
PagI TCATGA 1 cut(s) 682
PctI GAATGC 3 cut(s) 398, 800, 1027
PdmI GAANNNNTTC 2 cut(s) 90, 188
PfeI GAWTC 7 cut(s) 52, 407, 611, 827, 996, 1079, 1310
PkrI GCNGC 2 cut(s) 271, 971
Ple19I CGATCG 1 cut(s) 916
PleI GAGTC 2 cut(s) 160, 218
PpsI GAGTC 2 cut(s) 160, 218
PsiI TTATAA 1 cut(s) 1547
Psp6I CCWGG 1 cut(s) 1104
PspFI CCCAGC 1 cut(s) 1415
PspGI CCWGG 1 cut(s) 1104
PspN4I GGNNCC 6 cut(s) 324, 485, 755, 1020, 1222, 1409
PspPI GGNCC 1 cut(s) 1456
PspXI VCTCGAGB 1 cut(s) 226
PstI CTGCAG 1 cut(s) 1087
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 3 cut(s) 483, 541, 1504
PvuI CGATCG 1 cut(s) 916
PvuII CAGCTG 1 cut(s) 969
RsaI GTAC 1 cut(s) 1477
RsaNI GTAC 1 cut(s) 1476
RseI CAYNNNNRTG 4 cut(s) 206, 1004, 1189, 1355
SaqAI TTAA 3 cut(s) 1155, 1338, 1430
SatI GCNGC 2 cut(s) 270, 970
Sau96I GGNCC 1 cut(s) 1456
SchI GAGTC 2 cut(s) 161, 218
ScrFI CCNGG 2 cut(s) 389, 1106
SduI GDGCHC 1 cut(s) 758
SfaNI GCATC 4 cut(s) 758, 1351, 1471, 1483
SfcI CTRYAG 2 cut(s) 537, 1083
Sfr274I CTCGAG 2 cut(s) 226, 1526
SfuI TTCGAA 2 cut(s) 94, 825
SlaI CTCGAG 2 cut(s) 226, 1526
SmiMI CAYNNNNRTG 4 cut(s) 206, 1004, 1189, 1355
SmlI CTYRAG 5 cut(s) 226, 738, 845, 1164, 1526
SmoI CTYRAG 5 cut(s) 226, 738, 845, 1164, 1526
SphI GCATGC 1 cut(s) 497
Sse9I AATT 6 cut(s) 61, 246, 285, 560, 895, 1339
SsiI CCGC 1 cut(s) 385
SspI AATATT 1 cut(s) 859
SspMI CTAG 5 cut(s) 69, 341, 488, 936, 1412
StyD4I CCNGG 2 cut(s) 387, 1104
StyI CCWWGG 2 cut(s) 1022, 1520
TaaI ACNGT 1 cut(s) 1245
TaqI TCGA 5 cut(s) 94, 227, 825, 912, 1527
TaqII GACCGA 1 cut(s) 564
TasI AATT 6 cut(s) 61, 246, 285, 560, 895, 1339
TatI WGTACW 1 cut(s) 1475
TfiI GAWTC 7 cut(s) 52, 407, 611, 827, 996, 1079, 1310
Tru1I TTAA 3 cut(s) 1155, 1338, 1430
Tru9I TTAA 3 cut(s) 1155, 1338, 1430
TscAI CASTG 6 cut(s) 351, 477, 793, 1071, 1145, 1401
TseFI GTSAC 1 cut(s) 1291
TseI GCWGC 2 cut(s) 269, 969
Tsp45I GTSAC 1 cut(s) 1291
TspDTI ATGAA 8 cut(s) 44, 150, 686, 936, 988, 1284, 1514, 1578
TspRI CASTG 6 cut(s) 351, 477, 793, 1071, 1145, 1401
XapI RAATTY 1 cut(s) 61
XceI RCATGY 3 cut(s) 457, 497, 1188
XhoI CTCGAG 2 cut(s) 226, 1526
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 2 cut(s) 90, 188
XspI CTAG 5 cut(s) 69, 341, 488, 936, 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.