AT4G20740

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
11126140 .. 11128916
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G20740.1

Sequence Viewer

Length: 2184 bp
ATGAAATCACCAAAACCTCCGAATCTCTCTGATAAATCTCTTAAACCCAATTTCTTCCACGGACACCGTAAGCCGTCACAAAACCGCCCAACTGTCTACGGTGGTCTCTTCTCCAACCGCCAATCTATACCCAGAGTCTCACCCCAACCACAATCCAACTCCCTCGCTCACCGAACACCTTTCGATCTCCGCAAATGGGATCCAGAAACCCATCTCCCTCCTCCTTCTCCGCCGTCACATTCCACGGTGATCTCCGCCGCCTCCGAGCGTCTATCTCCAATCGCGAGATTCGTCCTCGACGCATTCCGTAAGAACCGTAACCATTGGGGTCCCTCAGTGGTCTCCGAGCTAAACAAACTCCGCCGCGTCACACCAAGTATCGTCGCCGAGGTTTTGAAACTAGGTAACGATGCTGCAGTCGCGGCTAAGTTCTTTCATTGGGCTGGTAAACAAAAAGGGTATAAACACGATTTCGCTGCTTACAATGCTTTTGCTTATTGCCTTAATCGAAACGGACATTTTCGTGCTGCGGATCAGTTACCTGAGCTTATGGATTCTCAGGGAAGACCACCGTCGGAGAAACAATTTGAGATTTTGATTAGAATGCACGCTGATAATAGAAGAGGTTTAAGGGTTTATTACGTTTACGAGAAGATGAAGAAGTTTGGGTTTAAGCCTAGGGTGTTCTTGTATAATAGGATTATGGATGCTTTGGTTAAAAATGGTTACTTTGATTTAGCTTTGGCTGTTTATGAGGATTTTAAGGAAGATGGGTTGGTGGAGGAGAGTACTACTTTTATGATCTTGGTTAAAGGGTTGTGTAAAGCAGGTAGGATCGAGGAAATGCTTGAGATTTTGCAGAGAATGAGGGAGAATTTGTGTAAGCCTGATGTTTTTGCTTACACGGCTATGATCAAGACTTTGGTTTCTGAAGGGAACTTGGATGCAAGTTTACGAGTTTGGGATGAGATGAGACGGGATGAGATAAAACCGGATGTGATGGCGTATGGAACACTTGTTGTGGGTTTGTGCAAGGACGGTAGAGTTGAAAGAGGCTATGAGTTGTTTATGGAGATGAAGGGGAAACAGATTTTGATTGATAGGGAGATCTACAGGGTTTTGATTGAAGGATTTGTAGCGGATGGGAAGGTTAGATCTGCTTGCAATCTGTGGGAGGATCTTGTGGATTCTGGGTATATAGCTGATATAGGGATATACAATGCAGTTATTAAAGGGTTATGTAGTGTGAACCAGGTTGATAAAGCATATAAGCTCTTCCAAGTTGCAATTGAGGAAGAACTAGAACCAGATTTTGAGACTCTAAGTCCCATTATGGTTGCTTATGTTGTGATGAATAGACTGAGTGATTTCTCCAATGTGCTAGAACGAATTGGAGAATTAGGATACCCTGTCTCAGATTACCTTACACAATTTTTTAAATTGTTGTGTGCTGATGAAGAAAAGAATGCGATGGCTTTAGATGTCTTTTATATACTAAAGACTAAAGGTCATGGCAGTGTCTCTGTGTACAACATTCTTATGGAAGCTCTTTACAAGATGGGTGATATTCAAAAGTCCTTGTCACTTTTCTATGAAATGAGGAAACTTGGGTTTGAACCAGATTCATCATCTTACAGTATTGCAATTTGCTGTTTTGTTGAGAAAGGGGATGTCAAAGCGGCTTGTTCATTTCATGAAAAAATCATTGAGATGTCGTGTGTTCCTTCCATAGCTGCGTATCTGTCTCTCACTAAAGGTCTCTGCCAAATTGGAGAAATTGATGCGGTGATGTTATTAGTCCGTGAATGTCTAGGAAATGTTGAAAGTGGTCCTATGGAGTTTAAGTACGCTCTTACGGTTTGTCATGTATGCAAAGGTAGTAATGCCGAGAAGGTTATGAAGGTGGTAGACGAGATGAACCAGGAAGGTGTCTTTATCAATGAAGTTATATACTGTGCGATTATCTCTGGTATGTCTAAGCATGGAACAATAAAAGTAGCAAGAGAAGTCTTTACAGAGCTGAAAAAGCGCAAAGTCATGACAGAGGCTGATATGGTAGTCTATGAGGAAATGTTAATTGAGCAGACAAAGAAGAAGACAGCTGATTTGGTGCTTTCAGGGATCAAGTTTTTTGGTCTCGAATCAAAACTAAGAGCAAAGGGTTGCAGACTACTCGATAACTAA

Protein Analysis

727

Amino Acids

82.43

Weight (kDa)

8.26

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 179 - 296 2.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 226 - 275 2.9e-08 PPR repeat family
TPR_24 PF23276 239 - 332 6.7e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 264 - 308 5.6e-10 PPR repeat family
PPR_long PF17177 281 - 383 7.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 296 - 345 4.1e-11 PPR repeat family
PPR_1 PF12854 328 - 360 3e-08 PPR repeat
PPR_2 PF13041 331 - 378 2.4e-07 PPR repeat family
PPR_2 PF13041 402 - 442 5.2e-06 PPR repeat family
PPR_2 PF13041 506 - 552 2.3e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 818
AccI GTMKAC 2 cut(s) 96, 1908
AccII CGCG 3 cut(s) 284, 366, 422
AclWI GGATC 6 cut(s) 194, 207, 540, 842, 1185, 2129
AcsI RAATTY 1 cut(s) 874
AcuI CTGAAG 1 cut(s) 951
AfaI GTAC 3 cut(s) 790, 1529, 1847
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 6 cut(s) 397, 1049, 1127, 1571, 1616, 1823
AhdI GACNNNNNGTC 2 cut(s) 1323, 1506
AjnI CCWGG 2 cut(s) 1251, 1920
AluBI AGCT 9 cut(s) 349, 547, 740, 1202, 1273, 1547, 1733, 2020, 2102
AluI AGCT 9 cut(s) 349, 547, 740, 1202, 1273, 1547, 1733, 2020, 2102
AlwI GGATC 6 cut(s) 194, 207, 540, 842, 1185, 2129
AlwNI CAGNNNCTG 1 cut(s) 2048
ApeKI GCWGC 4 cut(s) 413, 476, 527, 1733
ApoI RAATTY 1 cut(s) 874
ArsI GACNNNNNNTTYG 2 cut(s) 2089, 2121
AspA2I CCTAGG 1 cut(s) 677
AspLEI GCGC 1 cut(s) 2031
AspS9I GGNCC 2 cut(s) 329, 1829
AsuHPI GGTGA 5 cut(s) 132, 161, 259, 1574, 1798
AvaII GGWCC 2 cut(s) 329, 1829
AvrII CCTAGG 1 cut(s) 677
BamHI GGATCC 1 cut(s) 199
BbsI GAAGAC 2 cut(s) 571, 2102
BbvI GCAGC 4 cut(s) 400, 463, 514, 1720
BccI CCATC 6 cut(s) 219, 764, 994, 1136, 1465, 1552
BceAI ACGGC 3 cut(s) 58, 217, 921
BcgI CGANNNNNNTGC 3 cut(s) 458, 492, 2155
BciT130I CCWGG 2 cut(s) 1253, 1922
BciVI GTATCC 1 cut(s) 1397
BclI TGATCA 1 cut(s) 912
BfaI CTAG 5 cut(s) 401, 678, 1301, 1382, 1811
BfmI CTRYAG 2 cut(s) 414, 1111
BfuAI ACCTGC 1 cut(s) 818
BfuI GTATCC 1 cut(s) 1397
BglII AGATCT 2 cut(s) 1107, 1154
BisI GCNGC 8 cut(s) 258, 364, 414, 423, 477, 528, 1680, 1734
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 8 cut(s) 259, 365, 415, 424, 478, 529, 1681, 1735
BmcAI AGTACT 1 cut(s) 790
Bme1390I CCNGG 2 cut(s) 1253, 1922
Bme18I GGWCC 2 cut(s) 329, 1829
BmeRI GACNNNNNGTC 2 cut(s) 1323, 1506
BmgT120I GGNCC 2 cut(s) 329, 1829
BmiI GGNNCC 3 cut(s) 201, 330, 331
BmrFI CCNGG 2 cut(s) 1253, 1922
BmsI GCATC 4 cut(s) 400, 697, 934, 1771
BoxI GACNNNNGTC 1 cut(s) 571
BpiI GAAGAC 2 cut(s) 571, 2102
Bpu10I CCTNAGC 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 869
BsaI GGTCTC 4 cut(s) 110, 346, 1763, 2141
BsaJI CCNNGG 4 cut(s) 58, 243, 387, 677
BsaWI WCCGGW 1 cut(s) 991
BsaXI ACNNNNNCTCC 4 cut(s) 863, 893, 1829, 1859
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseBI CCWGG 2 cut(s) 1253, 1922
BseDI CCNNGG 4 cut(s) 58, 243, 387, 677
BseGI GGATG 7 cut(s) 712, 949, 970, 985, 1000, 1147, 1675
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 5 cut(s) 348, 534, 572, 1352, 1428
BseRI GAGGAG 2 cut(s) 210, 797
BseXI GCAGC 4 cut(s) 400, 463, 514, 1720
Bsh1236I CGCG 3 cut(s) 284, 366, 422
BsiSI CCGG 1 cut(s) 992
BslFI GGGAC 2 cut(s) 315, 1311
BslI CCNNNNNNNGG 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 967
BsmFI GGGAC 2 cut(s) 315, 1311
BsmI GAATGC 3 cut(s) 302, 609, 1471
Bso31I GGTCTC 4 cut(s) 110, 346, 1763, 2141
Bsp1407I TGTACA 1 cut(s) 1527
Bsp68I TCGCGA 1 cut(s) 284
BspCNI CTCAG 5 cut(s) 347, 535, 571, 1353, 1427
BspFNI CGCG 3 cut(s) 284, 366, 422
BspHI TCATGA 2 cut(s) 1693, 2037
BspLI GGNNCC 3 cut(s) 201, 330, 331
BspMAI CTGCAG 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 818
BspPI GGATC 6 cut(s) 194, 207, 540, 842, 1185, 2129
BspQI GCTCTTC 1 cut(s) 1280
BspTNI GGTCTC 4 cut(s) 110, 346, 1763, 2141
BsrGI TGTACA 1 cut(s) 1527
BssECI CCNNGG 4 cut(s) 58, 243, 387, 677
BssT1I CCWWGG 1 cut(s) 677
Bst2UI CCWGG 2 cut(s) 1253, 1922
Bst6I CTCTTC 3 cut(s) 113, 616, 1280
BstAUI TGTACA 1 cut(s) 1527
BstC8I GCNNGC 2 cut(s) 609, 1162
BstDEI CTNAG 9 cut(s) 334, 426, 543, 558, 1322, 1361, 1414, 1977, 2150
BstDSI CCRYGG 2 cut(s) 58, 243
BstF5I GGATG 7 cut(s) 712, 949, 970, 985, 1000, 1147, 1675
BstFNI CGCG 3 cut(s) 284, 366, 422
BstHHI GCGC 1 cut(s) 2031
BstMWI GCNNNNNNNGC 5 cut(s) 419, 422, 485, 905, 2026
BstNI CCWGG 2 cut(s) 1253, 1922
BstPAI GACNNNNGTC 1 cut(s) 571
BstSCI CCNGG 2 cut(s) 1251, 1920
BstSFI CTRYAG 2 cut(s) 414, 1111
BstUI CGCG 3 cut(s) 284, 366, 422
BstV1I GCAGC 4 cut(s) 400, 463, 514, 1720
BstV2I GAAGAC 2 cut(s) 571, 2102
BstX2I RGATCY 4 cut(s) 199, 1107, 1154, 1177
BstYI RGATCY 4 cut(s) 199, 1107, 1154, 1177
BsuI GTATCC 1 cut(s) 1397
BtgI CCRYGG 2 cut(s) 58, 243
BtgZI GCGATG 1 cut(s) 1484
BtsCI GGATG 7 cut(s) 712, 949, 970, 985, 1000, 1147, 1675
BtsI GCAGTG 1 cut(s) 1522
BtsIMutI CAGTG 2 cut(s) 342, 1522
BtuMI TCGCGA 1 cut(s) 284
BveI ACCTGC 1 cut(s) 818
Cac8I GCNNGC 2 cut(s) 609, 1162
CaiI CAGNNNCTG 1 cut(s) 2048
CciI TCATGA 2 cut(s) 1693, 2037
CfoI GCGC 1 cut(s) 2031
Cfr13I GGNCC 2 cut(s) 329, 1829
CseI GACGC 3 cut(s) 257, 308, 355
CsiI ACCWGGT 1 cut(s) 1251
Csp6I GTAC 3 cut(s) 789, 1528, 1846
CviAII CATG 5 cut(s) 1511, 1694, 1865, 1982, 2038
CviQI GTAC 3 cut(s) 789, 1528, 1846
DdeI CTNAG 9 cut(s) 334, 426, 543, 558, 1322, 1361, 1414, 1977, 2150
DraI TTTAAA 1 cut(s) 1438
DriI GACNNNNNGTC 2 cut(s) 1323, 1506
Eam1104I CTCTTC 3 cut(s) 113, 616, 1280
Eam1105I GACNNNNNGTC 2 cut(s) 1323, 1506
EarI CTCTTC 3 cut(s) 113, 616, 1280
EciI GGCGGA 3 cut(s) 219, 244, 350
Eco130I CCWWGG 1 cut(s) 677
Eco31I GGTCTC 4 cut(s) 110, 346, 1763, 2141
Eco47I GGWCC 2 cut(s) 329, 1829
Eco57I CTGAAG 1 cut(s) 951
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 1251, 1920
EcoT14I CCWWGG 1 cut(s) 677
ErhI CCWWGG 1 cut(s) 677
Esp3I CGTCTC 1 cut(s) 967
FaeI CATG 5 cut(s) 1514, 1697, 1868, 1985, 2041
FaqI GGGAC 2 cut(s) 315, 1311
FatI CATG 5 cut(s) 1510, 1693, 1864, 1981, 2037
FbaI TGATCA 1 cut(s) 912
FblI GTMKAC 2 cut(s) 96, 1908
Fnu4HI GCNGC 8 cut(s) 258, 364, 414, 423, 477, 528, 1680, 1734
FokI GGATG 7 cut(s) 719, 956, 977, 992, 1007, 1154, 1682
Fsp4HI GCNGC 8 cut(s) 258, 364, 414, 423, 477, 528, 1680, 1734
FspBI CTAG 5 cut(s) 401, 678, 1301, 1382, 1811
GlaI GCGC 1 cut(s) 2030
GluI GCNGC 8 cut(s) 258, 364, 414, 423, 477, 528, 1680, 1734
HapII CCGG 1 cut(s) 992
HgaI GACGC 3 cut(s) 257, 308, 355
HhaI GCGC 1 cut(s) 2031
Hin1II CATG 5 cut(s) 1514, 1697, 1868, 1985, 2041
Hin6I GCGC 1 cut(s) 2029
HinP1I GCGC 1 cut(s) 2029
HinfI GANTC 8 cut(s) 22, 135, 288, 554, 1187, 1318, 1622, 2141
HpaII CCGG 1 cut(s) 992
HphI GGTGA 5 cut(s) 132, 161, 259, 1574, 1798
Hpy166II GTNNAC 7 cut(s) 97, 449, 646, 953, 1249, 1528, 1909
Hpy188I TCNGA 7 cut(s) 21, 31, 265, 346, 577, 931, 1417
Hpy188III TCNNGA 6 cut(s) 203, 283, 916, 1694, 2038, 2138
Hpy8I GTNNAC 7 cut(s) 97, 449, 646, 953, 1249, 1528, 1909
Hpy99I CGWCG 3 cut(s) 302, 386, 577
HpyAV CCTTC 9 cut(s) 234, 926, 1072, 1121, 1141, 1734, 1885, 1894, 1919
HpyCH4IV ACGT 1 cut(s) 642
HpyF10VI GCNNNNNNNGC 5 cut(s) 419, 422, 485, 905, 2026
HpyF3I CTNAG 9 cut(s) 334, 426, 543, 558, 1322, 1361, 1414, 1977, 2150
HpySE526I ACGT 1 cut(s) 642
Hsp92II CATG 5 cut(s) 1514, 1697, 1868, 1985, 2041
HspAI GCGC 1 cut(s) 2029
KflI GGGWCCC 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 912
LguI GCTCTTC 1 cut(s) 1280
Lsp1109I GCAGC 4 cut(s) 400, 463, 514, 1720
LweI GCATC 4 cut(s) 400, 697, 934, 1771
MabI ACCWGGT 1 cut(s) 1251
MaeI CTAG 5 cut(s) 401, 678, 1301, 1382, 1811
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 8 cut(s) 75, 234, 317, 367, 404, 537, 725, 1581
MfeI CAATTG 1 cut(s) 1287
MflI RGATCY 4 cut(s) 199, 1107, 1154, 1177
MlyI GAGTC 2 cut(s) 144, 1312
MmeI TCCRAC 3 cut(s) 138, 180, 555
MslI CAYNNNNRTG 5 cut(s) 522, 908, 1515, 1538, 1709
MspA1I CMGCKG 1 cut(s) 2102
MspI CCGG 1 cut(s) 992
MspR9I CCNGG 2 cut(s) 1253, 1922
MunI CAATTG 1 cut(s) 1287
Mva1269I GAATGC 3 cut(s) 302, 609, 1471
MvaI CCWGG 2 cut(s) 1253, 1922
MvnI CGCG 3 cut(s) 284, 366, 422
MwoI GCNNNNNNNGC 5 cut(s) 419, 422, 485, 905, 2026
NlaIII CATG 5 cut(s) 1514, 1697, 1868, 1985, 2041
NlaIV GGNNCC 3 cut(s) 201, 330, 331
NmeAIII GCCGAG 2 cut(s) 412, 1912
NmuCI GTSAC 4 cut(s) 75, 234, 367, 1581
NruI TCGCGA 1 cut(s) 284
PagI TCATGA 2 cut(s) 1693, 2037
PciSI GCTCTTC 1 cut(s) 1280
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 3 cut(s) 302, 609, 1471
PfeI GAWTC 6 cut(s) 22, 288, 554, 1187, 1622, 2141
PkrI GCNGC 8 cut(s) 259, 365, 415, 424, 478, 529, 1681, 1735
PleI GAGTC 2 cut(s) 143, 1312
PpsI GAGTC 2 cut(s) 143, 1312
PpuMI RGGWCCY 1 cut(s) 329
PshAI GACNNNNGTC 1 cut(s) 571
Psp5II RGGWCCY 1 cut(s) 329
Psp6I CCWGG 2 cut(s) 1251, 1920
PspGI CCWGG 2 cut(s) 1251, 1920
PspN4I GGNNCC 3 cut(s) 201, 330, 331
PspPI GGNCC 2 cut(s) 329, 1829
PspPPI RGGWCCY 1 cut(s) 329
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 2048
PsuI RGATCY 4 cut(s) 199, 1107, 1154, 1177
PvuII CAGCTG 1 cut(s) 2102
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 3 cut(s) 790, 1529, 1847
RsaNI GTAC 3 cut(s) 789, 1528, 1846
RseI CAYNNNNRTG 5 cut(s) 522, 908, 1515, 1538, 1709
SapI GCTCTTC 1 cut(s) 1280
SatI GCNGC 8 cut(s) 258, 364, 414, 423, 477, 528, 1680, 1734
Sau96I GGNCC 2 cut(s) 329, 1829
ScaI AGTACT 1 cut(s) 790
SchI GAGTC 2 cut(s) 144, 1312
ScrFI CCNGG 2 cut(s) 1253, 1922
SexAI ACCWGGT 1 cut(s) 1251
SfaNI GCATC 4 cut(s) 400, 697, 934, 1771
SfcI CTRYAG 2 cut(s) 414, 1111
SinI GGWCC 2 cut(s) 329, 1829
SmiMI CAYNNNNRTG 5 cut(s) 522, 908, 1515, 1538, 1709
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
SspMI CTAG 5 cut(s) 401, 678, 1301, 1382, 1811
StyD4I CCNGG 2 cut(s) 1251, 1920
StyI CCWWGG 1 cut(s) 677
TaiI ACGT 1 cut(s) 645
TaqI TCGA 6 cut(s) 183, 297, 508, 837, 2139, 2175
TatI WGTACW 2 cut(s) 788, 1527
TauI GCSGC 4 cut(s) 260, 366, 425, 1682
TfiI GAWTC 6 cut(s) 22, 288, 554, 1187, 1622, 2141
TscAI CASTG 2 cut(s) 342, 1522
TseFI GTSAC 4 cut(s) 75, 234, 367, 1581
TseI GCWGC 4 cut(s) 413, 476, 527, 1733
Tsp45I GTSAC 4 cut(s) 75, 234, 367, 1581
TspGWI ACGGA 4 cut(s) 75, 296, 528, 1790
TspRI CASTG 2 cut(s) 342, 1522
VpaK11BI GGWCC 2 cut(s) 329, 1829
XapI RAATTY 1 cut(s) 874
XmaJI CCTAGG 1 cut(s) 677
XmiI GTMKAC 2 cut(s) 96, 1908
XspI CTAG 5 cut(s) 401, 678, 1301, 1382, 1811
ZrmI AGTACT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.