Rroxscaffold_4G00328510

PPR repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007852
Physical Location & Seq
Reverse (-)
61541782 .. 61544900
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328510.1

Sequence Viewer

Length: 1923 bp
ATGCCCCCTCCTCCCAAGTTCTCCTTATTCCACGGCCACCGCACCCCCTCCCGTAACCGCCCCACCGTCCGCGGCAGCCGCCTCTCTCCCCCTAAACCCAACCCCACCCCAACTCAATCCCATCCCTTCGATCTCTCCAAGTGGGACCCCCACCAATCTCCGCCGTCCACCTCCTCCACCCCCAACCCCAACCCCGCCGTCCCCCTCTCCTTCCTCTCCCCCATCGCCCGCTTCATCCTCGACGCCCTCCGCAAGAACCGCAACCGCTGGGGCCCGCCGGTCGTCTCGGAGCTCCAGAAGCTCCGCCGCGTCACCCCCGACCTGGTCGCCGAGGTCCTCAAGGTCCAAAACGACCCCGTTTCGGCCTCCAAGCTCTTCCACTGGGCCGGGGAAACCCCCACCGAGAAACAGTTTGAGATTCTGATCAGAATGCACTCTGATGCCAATAGAGGTCTTAGGGTTTACCATGTCTATGAGAAGATGAAGAAGTTTGGGGTTAAACCCAGGGTTTATTTGTACAATAGGGTCATGGATGCGTTGGTGAAAACAGGTCATTTGGATTTGGCATTGTCGGTTTACGACGATTTTCGGGGTGATGGGCTGGTGGAGGAGAGTGTGACTTTTATGATTTTGATAAAGGGGATGTGTAAATGTGGGAGAGTTGATGAAATGTTGGGGCTTTTGGATAGAATGAGGGTTTGGGAGGAAATGAGGAGGGACAGAGTTGAGGCGGATGCTATGGCGTATGTGACTCTAGTTACAGGGTTGTGTAAAGGAGGGAGGGTGGAGAAGGGGTATGAGTTGTTTAGGGAGATGAAGGAGAAGGGTTTTTTGATTGATAGAGCGATTTATGGTGTGCTGGTTGAGGGTTTTGTGGAAGACAGGAAGGTTGGGGCAGCGTGTGATTTGTTGAAGGATTTGGTGGGATCGGGGTACAGAGCAGATTTGGGGATATATAATTCTCTAATCAAGGGGTTATGTGATGTTAAGCGGGTAGATAAGGCTTATAAGCTTTTCCGAGTTGCAGTTCAAGAGGGTCTTGGGCCGGATTTTGCGACGGTGAATCCCATTCTGGTGTCTTATGCTGAGATGAGAAAAATGGATAACTTTTGCGAGTTGCTTGCACAGATGGAGAAATGTGGTTGTCCTGTTATTGATGATCTTTCGAAATTCTTCTCCAATGTTGCTGAAAAGGAGGATGGAGTCATGATGGCTTTGGAAGTGTTTGAAGACTTGAAAGTTAAAAATTATTCTAGTGTTGTGATCTACAATATCCTTATTGCCGGCCTCCACAAATTTGGGAAAGTGAAGAAAGCATTATCCCTCTTTGATGAGATGAAGAGTTTTGATTTCCAGCCTGACTCGTCCACTTATAGCTCTGCGATTATGTGTTATATTGAAGAAGGGGATCTCCATGAAGCTTGTGCCTGTCATAATAAGATAATTGAGATGTCTTGTGTTCCTTCTATTGCTGCATATCGCTCTCTTGCTAAAGGGCTTTTCAATGTTGGAGAGATTGATGCAGTTATGCTGCTAGTCCGGGACTGCTTAGCCAGTGTGACAAGTGGGCCCGTGACATTCAAGTATTCTCTTACCGTTCTCCATGCATGTAGATCCAATAATGCTGAGAAGGTGATTGATGTACTGAATGAGATGATGCAGCAGGGTTGTCCACCAGATCATGTTATATACTCTGCTATAATCTCTGGCATGTGTAAGCATGGCACAATAGAGGAGGCAAGGAAGGTATTTTCATATTTGAAAGAGCGCAAACTTATAACAGAAGCCAACATGATTGTGTATGATGATATATTAATTGAACACATGAAGAAGAAGACGGCAGATCTGGTAGTGTCAGGGTTGAAGTTTTTTGGTTTAGAATCCAAGTTGAAAGCAAAGGGTTGTAAGCTGCTGTCAGGTTGA

Protein Analysis

640

Amino Acids

71.86

Weight (kDa)

8.63

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 129 - 232 7.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 205 - 258 1.2e-07 PPR repeat family
PPR_1 PF12854 205 - 232 2.3e-06 PPR repeat
PPR_1 PF12854 242 - 273 5.9e-07 PPR repeat
PPR_2 PF13041 245 - 292 1.4e-07 PPR repeat family
PPR PF01535 248 - 277 3.6e-07 PPR repeat
PPR_1 PF12854 311 - 340 9.5e-07 PPR repeat
PPR_2 PF13041 317 - 355 3.3e-06 PPR repeat family
PPR_2 PF13041 419 - 462 6.5e-13 PPR repeat family
PPR_1 PF12854 420 - 447 1.1e-06 PPR repeat
PPR PF01535 421 - 450 3.3e-07 PPR repeat
PPR_1 PF12854 556 - 585 3.9e-09 PPR repeat
PPR_2 PF13041 559 - 591 4.1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1008, 1778
AccII CGCG 2 cut(s) 72, 309
AclWI GGATC 3 cut(s) 934, 1416, 1608
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 2 cut(s) 1169, 1295
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 3 cut(s) 518, 935, 1644
AfiI CCNNNNNNNGG 2 cut(s) 322, 361
AjnI CCWGG 2 cut(s) 321, 503
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AluBI AGCT 7 cut(s) 292, 301, 373, 1012, 1377, 1421, 1909
AluI AGCT 7 cut(s) 292, 301, 373, 1012, 1377, 1421, 1909
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 3 cut(s) 934, 1416, 1608
AoxI GGCC 7 cut(s) 34, 271, 363, 384, 1043, 1285, 1568
ApaI GGGCCC 2 cut(s) 275, 1572
ApeKI GCWGC 6 cut(s) 75, 896, 1472, 1531, 1660, 1909
ApoI RAATTY 2 cut(s) 1169, 1295
AseI ATTAAT 1 cut(s) 1814
Asp700I GAANNNNTTC 1 cut(s) 1172
AspLEI GCGC 1 cut(s) 1770
AspS9I GGNCC 9 cut(s) 145, 271, 272, 334, 343, 384, 1043, 1568, 1569
AsuC2I CCSGG 2 cut(s) 388, 1541
AsuHPI GGTGA 5 cut(s) 304, 553, 605, 1072, 1645
AsuII TTCGAA 1 cut(s) 1166
AvaII GGWCC 3 cut(s) 145, 334, 343
BaeGI GKGCMC 2 cut(s) 275, 1572
BanII GRGCYC 3 cut(s) 275, 294, 1572
BbsI GAAGAC 3 cut(s) 885, 1236, 1841
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 6 cut(s) 87, 908, 1459, 1518, 1672, 1896
BccI CCATC 6 cut(s) 129, 230, 590, 1123, 1193, 1204
BceAI ACGGC 4 cut(s) 49, 148, 182, 1854
BcgI CGANNNNNNTGC 2 cut(s) 1103, 1137
BciT130I CCWGG 2 cut(s) 323, 505
BclI TGATCA 1 cut(s) 423
BcnI CCSGG 2 cut(s) 388, 1541
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 3 cut(s) 755, 1254, 1535
BglII AGATCT 1 cut(s) 1843
BisI GCNGC 9 cut(s) 73, 76, 79, 307, 897, 1473, 1532, 1661, 1910
BlpI GCTNAGC 1 cut(s) 1549
BlsI GCNGC 9 cut(s) 74, 77, 80, 308, 898, 1474, 1533, 1662, 1911
Bme1390I CCNGG 4 cut(s) 323, 388, 505, 1541
Bme18I GGWCC 3 cut(s) 145, 334, 343
BmgT120I GGNCC 9 cut(s) 145, 271, 272, 334, 343, 384, 1043, 1568, 1569
BmiI GGNNCC 5 cut(s) 146, 147, 272, 273, 1570
BmrFI CCNGG 4 cut(s) 323, 388, 505, 1541
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 5 cut(s) 430, 523, 724, 1510, 1647
BmuI ACTGGG 1 cut(s) 391
BpiI GAAGAC 3 cut(s) 885, 1236, 1841
BpmI CTGGAG 1 cut(s) 278
Bpu1102I GCTNAGC 1 cut(s) 1549
Bpu14I TTCGAA 1 cut(s) 1166
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 2 cut(s) 388, 1541
BsaBI GATNNNNATC 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 6 cut(s) 31, 70, 330, 387, 503, 504
BsaXI ACNNNNNCTCC 4 cut(s) 768, 779, 798, 809
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 361
Bse118I RCCGGY 2 cut(s) 277, 1283
Bse1I ACTGG 2 cut(s) 386, 1554
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 2 cut(s) 323, 505
BseDI CCNNGG 6 cut(s) 31, 70, 330, 387, 503, 504
BseGI GGATG 6 cut(s) 121, 234, 538, 648, 739, 1204
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 322, 361
BseMII CTCAG 2 cut(s) 1077, 1617
BseNI ACTGG 2 cut(s) 386, 1554
BseRI GAGGAG 4 cut(s) 163, 623, 727, 1748
BseSI GKGCMC 2 cut(s) 275, 1572
BseXI GCAGC 6 cut(s) 87, 908, 1459, 1518, 1672, 1896
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 2 cut(s) 72, 309
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 7 cut(s) 36, 273, 365, 386, 1045, 1287, 1570
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 5 cut(s) 278, 387, 1046, 1284, 1540
BslFI GGGAC 4 cut(s) 158, 185, 731, 1556
BslI CCNNNNNNNGG 2 cut(s) 322, 361
BsmAI GTCTC 1 cut(s) 289
BsmBI CGTCTC 1 cut(s) 289
BsmFI GGGAC 4 cut(s) 158, 185, 731, 1556
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 7 cut(s) 36, 273, 365, 386, 1045, 1287, 1570
Bsp119I TTCGAA 1 cut(s) 1166
Bsp120I GGGCCC 2 cut(s) 271, 1568
Bsp1286I GDGCHC 3 cut(s) 275, 294, 1572
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 9 cut(s) 130, 423, 926, 1159, 1263, 1408, 1613, 1678, 1843
Bsp1720I GCTNAGC 1 cut(s) 1549
BspANI GGCC 7 cut(s) 36, 273, 365, 386, 1045, 1287, 1570
BspCNI CTCAG 2 cut(s) 1078, 1618
BspFNI CGCG 2 cut(s) 72, 309
BspHI TCATGA 1 cut(s) 1206
BspLI GGNNCC 5 cut(s) 146, 147, 272, 273, 1570
BspPI GGATC 3 cut(s) 934, 1416, 1608
BspQI GCTCTTC 1 cut(s) 380
BspT104I TTCGAA 1 cut(s) 1166
BsrFI RCCGGY 2 cut(s) 277, 1283
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 2 cut(s) 386, 1554
BssAI RCCGGY 2 cut(s) 277, 1283
BssECI CCNNGG 6 cut(s) 31, 70, 330, 387, 503, 504
BssMI GATC 9 cut(s) 130, 423, 926, 1159, 1263, 1408, 1613, 1678, 1843
BssNI GRCGYC 1 cut(s) 243
Bst2UI CCWGG 2 cut(s) 323, 505
Bst4CI ACNGT 4 cut(s) 67, 411, 1060, 1597
Bst6I CTCTTC 2 cut(s) 380, 1334
BstACI GRCGYC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 1166
BstC8I GCNNGC 4 cut(s) 229, 275, 1122, 1285
BstDEI CTNAG 4 cut(s) 455, 1086, 1549, 1626
BstDSI CCRYGG 2 cut(s) 31, 70
BstF5I GGATG 6 cut(s) 121, 234, 538, 648, 739, 1204
BstFNI CGCG 2 cut(s) 72, 309
BstHHI GCGC 1 cut(s) 1770
BstKTI GATC 9 cut(s) 133, 426, 929, 1162, 1266, 1411, 1616, 1681, 1846
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 9 cut(s) 130, 423, 926, 1159, 1263, 1408, 1613, 1678, 1843
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 3 cut(s) 78, 258, 298
BstNI CCWGG 2 cut(s) 323, 505
BstNSI RCATGY 2 cut(s) 1611, 1714
BstSCI CCNGG 4 cut(s) 321, 386, 503, 1539
BstSLI GKGCMC 2 cut(s) 275, 1572
BstUI CGCG 2 cut(s) 72, 309
BstV1I GCAGC 6 cut(s) 87, 908, 1459, 1518, 1672, 1896
BstV2I GAAGAC 3 cut(s) 885, 1236, 1841
BstX2I RGATCY 3 cut(s) 1408, 1613, 1843
BstXI CCANNNNNNTGG 1 cut(s) 1298
BstYI RGATCY 3 cut(s) 1408, 1613, 1843
BsuRI GGCC 7 cut(s) 36, 273, 365, 386, 1045, 1287, 1570
BtgI CCRYGG 2 cut(s) 31, 70
BtgZI GCGATG 1 cut(s) 208
BtsCI GGATG 6 cut(s) 121, 234, 538, 648, 739, 1204
BtsIMutI CAGTG 2 cut(s) 379, 1561
Cac8I GCNNGC 4 cut(s) 229, 275, 1122, 1285
CciI TCATGA 1 cut(s) 1206
CfoI GCGC 1 cut(s) 1770
Cfr10I RCCGGY 2 cut(s) 277, 1283
Cfr13I GGNCC 9 cut(s) 145, 271, 272, 334, 343, 384, 1043, 1568, 1569
Cfr42I CCGCGG 1 cut(s) 73
CseI GACGC 2 cut(s) 251, 298
CsiI ACCWGGT 1 cut(s) 321
Csp6I GTAC 3 cut(s) 517, 934, 1643
CviQI GTAC 3 cut(s) 517, 934, 1643
DdeI CTNAG 4 cut(s) 455, 1086, 1549, 1626
DpnI GATC 9 cut(s) 132, 425, 928, 1161, 1265, 1410, 1615, 1680, 1845
DpnII GATC 9 cut(s) 130, 423, 926, 1159, 1263, 1408, 1613, 1678, 1843
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 380, 1334
EarI CTCTTC 2 cut(s) 380, 1334
EciI GGCGGA 3 cut(s) 150, 293, 746
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 3 cut(s) 275, 294, 1572
Eco47I GGWCC 3 cut(s) 145, 334, 343
Eco53kI GAGCTC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 292
EcoO109I RGGNCCY 3 cut(s) 145, 271, 334
EcoRII CCWGG 2 cut(s) 321, 503
EcoT22I ATGCAT 1 cut(s) 1609
EcoT38I GRGCYC 3 cut(s) 275, 294, 1572
Esp3I CGTCTC 1 cut(s) 289
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 1023, 1055
FaqI GGGAC 4 cut(s) 158, 185, 731, 1556
FauI CCCGC 4 cut(s) 202, 236, 282, 984
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 9 cut(s) 73, 76, 79, 307, 897, 1473, 1532, 1661, 1910
FokI GGATG 6 cut(s) 108, 221, 545, 655, 746, 1211
FriOI GRGCYC 3 cut(s) 275, 294, 1572
Fsp4HI GCNGC 9 cut(s) 73, 76, 79, 307, 897, 1473, 1532, 1661, 1910
FspBI CTAG 3 cut(s) 755, 1254, 1535
GlaI GCGC 1 cut(s) 1769
GluI GCNGC 9 cut(s) 73, 76, 79, 307, 897, 1473, 1532, 1661, 1910
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 7 cut(s) 36, 273, 365, 386, 1045, 1287, 1570
HapII CCGG 5 cut(s) 278, 387, 1046, 1284, 1540
HgaI GACGC 2 cut(s) 251, 298
HhaI GCGC 1 cut(s) 1770
Hin1I GRCGYC 1 cut(s) 243
Hin6I GCGC 1 cut(s) 1768
HinP1I GCGC 1 cut(s) 1768
HindIII AAGCTT 2 cut(s) 1010, 1419
HinfI GANTC 6 cut(s) 418, 751, 1063, 1203, 1361, 1880
HpaII CCGG 5 cut(s) 278, 387, 1046, 1284, 1540
HphI GGTGA 5 cut(s) 304, 553, 605, 1072, 1645
Hpy166II GTNNAC 5 cut(s) 168, 463, 577, 1368, 1673
Hpy188I TCNGA 5 cut(s) 289, 423, 428, 439, 1019
Hpy188III TCNNGA 3 cut(s) 295, 1031, 1207
Hpy8I GTNNAC 5 cut(s) 168, 463, 577, 1368, 1673
Hpy99I CGWCG 3 cut(s) 245, 584, 1060
HpyCH4III ACNGT 4 cut(s) 67, 411, 1060, 1597
HpyCH4V TGCA 7 cut(s) 433, 1025, 1124, 1475, 1523, 1607, 1660
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 258, 298
HpyF3I CTNAG 4 cut(s) 455, 1086, 1549, 1626
Hsp92I GRCGYC 1 cut(s) 243
HspAI GCGC 1 cut(s) 1768
KflI GGGWCCC 1 cut(s) 145
KroI GCCGGC 1 cut(s) 1283
KroNI GCCGGC 1 cut(s) 1285
Ksp22I TGATCA 1 cut(s) 423
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 9 cut(s) 130, 423, 926, 1159, 1263, 1408, 1613, 1678, 1843
LguI GCTCTTC 1 cut(s) 380
LmnI GCTCC 3 cut(s) 289, 297, 306
Lsp1109I GCAGC 6 cut(s) 87, 908, 1459, 1518, 1672, 1896
LweI GCATC 5 cut(s) 430, 523, 724, 1510, 1647
MabI ACCWGGT 1 cut(s) 321
MaeI CTAG 3 cut(s) 755, 1254, 1535
MaeIII GTNAC 7 cut(s) 53, 310, 616, 748, 757, 1558, 1573
MalI GATC 9 cut(s) 132, 425, 928, 1161, 1265, 1410, 1615, 1680, 1845
MboI GATC 9 cut(s) 130, 423, 926, 1159, 1263, 1408, 1613, 1678, 1843
MflI RGATCY 3 cut(s) 1408, 1613, 1843
MhlI GDGCHC 3 cut(s) 275, 294, 1572
MluCI AATT 6 cut(s) 958, 1169, 1246, 1295, 1443, 1815
MlyI GAGTC 3 cut(s) 745, 1212, 1355
MmeI TCCRAC 1 cut(s) 1489
Mph1103I ATGCAT 1 cut(s) 1609
MroNI GCCGGC 1 cut(s) 1283
MroXI GAANNNNTTC 1 cut(s) 1172
MseI TTAA 4 cut(s) 498, 987, 1242, 1814
MslI CAYNNNNRTG 4 cut(s) 438, 471, 1073, 1796
MspA1I CMGCKG 2 cut(s) 72, 267
MspI CCGG 5 cut(s) 278, 387, 1046, 1284, 1540
MspR9I CCNGG 4 cut(s) 323, 388, 505, 1541
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 2 cut(s) 323, 505
MvnI CGCG 2 cut(s) 72, 309
MwoI GCNNNNNNNGC 3 cut(s) 78, 258, 298
NaeI GCCGGC 1 cut(s) 1285
NciI CCSGG 2 cut(s) 388, 1541
NdeII GATC 9 cut(s) 130, 423, 926, 1159, 1263, 1408, 1613, 1678, 1843
NgoMIV GCCGGC 1 cut(s) 1283
NlaIV GGNNCC 5 cut(s) 146, 147, 272, 273, 1570
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 5 cut(s) 310, 616, 748, 1558, 1573
NsiI ATGCAT 1 cut(s) 1609
NspI RCATGY 2 cut(s) 1611, 1714
NspV TTCGAA 1 cut(s) 1166
PagI TCATGA 1 cut(s) 1206
PasI CCCWGGG 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 380
PctI GAATGC 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 1285
PdmI GAANNNNTTC 1 cut(s) 1172
PfeI GAWTC 3 cut(s) 418, 1063, 1880
PflFI GACNNNGTC 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 1539
PkrI GCNGC 9 cut(s) 74, 77, 80, 308, 898, 1474, 1533, 1662, 1911
PleI GAGTC 3 cut(s) 745, 1211, 1355
PpsI GAGTC 3 cut(s) 745, 1211, 1355
PpuMI RGGWCCY 2 cut(s) 145, 334
PshBI ATTAAT 1 cut(s) 1814
PsiI TTATAA 2 cut(s) 1008, 1778
Psp124BI GAGCTC 1 cut(s) 294
Psp5II RGGWCCY 2 cut(s) 145, 334
Psp6I CCWGG 2 cut(s) 321, 503
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 2 cut(s) 321, 503
PspN4I GGNNCC 5 cut(s) 146, 147, 272, 273, 1570
PspOMI GGGCCC 2 cut(s) 271, 1568
PspPI GGNCC 9 cut(s) 145, 271, 272, 334, 343, 384, 1043, 1568, 1569
PspPPI RGGWCCY 2 cut(s) 145, 334
PsuI RGATCY 3 cut(s) 1408, 1613, 1843
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 3 cut(s) 518, 935, 1644
RsaNI GTAC 3 cut(s) 517, 934, 1643
RseI CAYNNNNRTG 4 cut(s) 438, 471, 1073, 1796
SacI GAGCTC 1 cut(s) 294
SacII CCGCGG 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 380
SaqAI TTAA 4 cut(s) 498, 987, 1242, 1814
SatI GCNGC 9 cut(s) 73, 76, 79, 307, 897, 1473, 1532, 1661, 1910
Sau3AI GATC 9 cut(s) 130, 423, 926, 1159, 1263, 1408, 1613, 1678, 1843
Sau96I GGNCC 9 cut(s) 145, 271, 272, 334, 343, 384, 1043, 1568, 1569
SchI GAGTC 3 cut(s) 745, 1212, 1355
ScrFI CCNGG 4 cut(s) 323, 388, 505, 1541
SduI GDGCHC 3 cut(s) 275, 294, 1572
SexAI ACCWGGT 1 cut(s) 321
SfaNI GCATC 5 cut(s) 430, 523, 724, 1510, 1647
Sfr303I CCGCGG 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 1166
SgrBI CCGCGG 1 cut(s) 73
SinI GGWCC 3 cut(s) 145, 334, 343
SmiMI CAYNNNNRTG 4 cut(s) 438, 471, 1073, 1796
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 6 cut(s) 958, 1169, 1246, 1295, 1443, 1815
SspMI CTAG 3 cut(s) 755, 1254, 1535
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 4 cut(s) 321, 386, 503, 1539
TaaI ACNGT 4 cut(s) 67, 411, 1060, 1597
TaqI TCGA 3 cut(s) 129, 240, 1166
TasI AATT 6 cut(s) 958, 1169, 1246, 1295, 1443, 1815
TatI WGTACW 2 cut(s) 516, 1642
TauI GCSGC 3 cut(s) 75, 81, 309
TfiI GAWTC 3 cut(s) 418, 1063, 1880
Tru1I TTAA 4 cut(s) 498, 987, 1242, 1814
Tru9I TTAA 4 cut(s) 498, 987, 1242, 1814
TscAI CASTG 2 cut(s) 386, 1561
TseFI GTSAC 5 cut(s) 310, 616, 748, 1558, 1573
TseI GCWGC 6 cut(s) 75, 896, 1472, 1531, 1660, 1909
Tsp45I GTSAC 5 cut(s) 310, 616, 748, 1558, 1573
TspDTI ATGAA 8 cut(s) 223, 497, 681, 830, 1352, 1431, 1743, 1841
TspRI CASTG 2 cut(s) 386, 1561
Tth111I GACNNNGTC 1 cut(s) 323
VpaK11BI GGWCC 3 cut(s) 145, 334, 343
VspI ATTAAT 1 cut(s) 1814
XapI RAATTY 2 cut(s) 1169, 1295
XceI RCATGY 2 cut(s) 1611, 1714
XmnI GAANNNNTTC 1 cut(s) 1172
XspI CTAG 3 cut(s) 755, 1254, 1535
Zsp2I ATGCAT 1 cut(s) 1609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.