Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007852

Physical Location & Seq

Genomic Coordinates Forward (+)

1654403 .. 1657003

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

ATGCGTCCATTTCCGGTTCGATATGCGTCCAAGATTCTTCAAGAAATAAGAAAATTAGAAAATTACAAAACCCCTAAATCACCAAATGGAAAAGAAAGTAGCTCACCTCTTTCAGTGTGTGTCATTAGCTGCGAGCGTGAGGGACGACGGCCAACAGAGGAGAGAGGACACTCTGCGCACTGCAGACAACTGAGCAAAGAGAGAGTGAGAGAGAGCTCAGAGAAGAAGACGACGCTCTGCAGTGATGATAATAATCATTTTTTATTTTTTATTTTATTTAAAAGGGAACAGCCGGTGGCCATTTTGTCACTACATTATCAAACGAAAAGAATTAGAGAGAAAGGGGCAGCAACAAATGTTAAAATGCCACCTCAGTCCCCACCCCCTAAATTCCAGATCTTCCACGGCCACCGCAAGCCCACACAGAACCGCCCCACCGTCCGCGGCGGCCTCTTCTCCGACCGTGTCTCTCAGCCGAGCCGCAAATACCCCACCACCGTAACTCAATCCCAGCCCTTCGATCTCTCCAAGTGGGACCCACACCTGCCCCAAACCTCGCCGTCCACTTCATCGCCCAACCCCGACGACACGACCCTCCTCTCGTTCCTCTCCCCCATCGCCCGCTTCATACTCGATGCTTTCCGCAAGAACCGGAACCACTGGGGCCCGCCAGTCGTCTCGGAGCTCCGGAAGTTCCGCCGGGTCACGCCGGACCTCGTCGCCGAGGTGCTCAAGGTCCAGAATGACCCCGTTTCGGCCTCCAAGTTCTTCCACTGGGCAGGTAAGCAAAAGGGTTTCAAGCACACTTATGCTTCGTACAATGCCTTGGCTTATTGTCTGAACCGGTCCAACCGGTTCCGGTCGGCGGACCAAGTCCCCGAGCTGATGGACTCGCAGGGCAAACCGCCGAGCGAGAAACAGTTTGAGATTCTCATCAGAATGCACTCTGATGCCAATAGAGGTCTCAGGGTTTATTATGTGTATGAAAAAATGAAGAAATTTGGGGTTAAACCCAGGGTTTTCTTGTACAATAGGATCATGGATGCGTTGGCGAAAACGGGTTATTTGGATTTGGCCTTATCGGTTTACGATGACTTTCGTGATGATGGATTGGTGGAGGAGAGTGTTACTTTCATGATCTTGATAAAGGGTATGTGTAAAATGGGAAGAATTGATGAAATGTTGCAGCTTTTGGAGAGAATGAGGGCGAATTTGTGTAAACCGGACGTGTTTGCATACACGGCAATGATTAAGGTTTTGCTTTCAGAGGGGAACTTAGATGGGTGTTTGAGGGTTTGGGAGGAAATGAAGCGAGATAGGGTTGAGGCTGATGCTATGGCATATGCAACTCTGGTTACAGGGTTGTGTAAGGGTGGCAGGGTGGAGAAAGGGTACGAATTGTTTAGAGAGATGAAGGCGAAGGGTTTCTTGATTGATAGAGCGATATACGGGGTGTTGATTGAGGGGTTTGTGGCGGACAGGAAGGTTGGGGTGGCTTGTGATTTGTTGAAGGATTTGGTGGACTCGGGCTATAGGCCAGACTTGGGGATAAATAATTCTCTTATCGAGGGTTTATGTAATGTGAAGCGGGTTGATAAGGCTTATAAAATTTTCCGAGTTACTGTTCAAGAGGGTCTTCAGCCAGATTTCGCTACAGTGAATCCCATTTTGGTGTTCTATGCGGAGACAAGTAAAGTGGATAAGTTCTGCGAGATGCTTGCACAGATGGAGAAATGTGGTTTTCCTGTCATTGACGATCTTTTGAAATTCTTCTCCTTTATTGTAGGAAAGGAGGACAGAGTAACAATGGGTTTGGAAGTGTTTGAAGAGTTAAAAGTCAAAGGTTATTATAGTTTAGGAATCTACAATATCTTTATGGAGGCCCTCCACAAATCTGGGAAAGTGAAAAAAGCATTGTCTCTCTTTAATGAAACGAAGGATGTGGGTTTGCAGCCCGACTCCTCTACTTACAGCATTGCCATAATGTGTTTTGTTGAAGATGGGGACATCCATGAGGCTTGTGCCTGTTATAATAAAATAATTGAGATGTCTTGTGTTCCTTTGATTGCTGCCTACCGTTCGCTTGCTAGAGGGCTTTGTAAAATTGGAGAGATTGACGCCGTTATGCTGTTACTTCGTGACTGCTTAGCCAGCGTGACAAGTGGACCCTTGGAATTCAAGTATTCTCTTACCATTCTCCATGCATGTAAATCAAATAATGCTGAGAAGGTGGTTGAGGTGCTAAATGAGATGATACAGCAGGGTTGTCCTCCAGATGATGTTGTATACTCTGCTATAATCTCTGGCATGTGTAAGCATGGCACAATAGAGGAGGCAAGAAAAATATTTTCAAATTTGAAAGAGCACAAAATTTTAACAGAAGCCAACATGATTGTGTATGATGTATTAATTGAACACATGAAGAAGAAGACGGCAGATCTGGTGGTGTCTGGTTTGAAGTTTTTTGGATTAGAAAACAAATTGAAAGCAAAGGGTTGTAAGCTGCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

838

Amino Acids

94.97

Weight (kDa)

9.04

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20740
fragaria_vesca	FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120
malus_domestica	MD02G1297100.v1.1 MD07G1026900.v1.1
prunus_persica	Prupe.2G027000_v2.0.a1 Prupe.2G027000_v2.0.a1
pyrus_communis	pycom02g25030 pycom07g02030 pycom07g02070
rosa_chinensis	RchiOBHm_Chr1g0319391
rosa_laevigata	RLG00000030490
rosa_multiflora	Rmu_sc0005870.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328510
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039500 Rh1BG036300 Rh1CG038400 Rh1DG031400
rosa_wichuraiana	Rw1G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1605, 2031
AarI	CACCTGC	1 cut(s)	552
Acc16I	TGCGCA	1 cut(s)	177
Acc36I	ACCTGC	2 cut(s)	552, 770
AccI	GTMKAC	1 cut(s)	2286
AccII	CGCG	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	687
AclWI	GGATC	1 cut(s)	1043
AcoI	YGGCCR	3 cut(s)	149, 297, 406
AcsI	RAATTY	8 cut(s)	389, 998, 1210, 1608, 1766, 2174, 2353, 2370
AcuI	CTGAAG	1 cut(s)	1622
AcyI	GRCGYC	1 cut(s)	2118
AfaI	GTAC	3 cut(s)	818, 1028, 1394
AfiI	CCNNNNNNNGG	3 cut(s)	754, 865, 1544
AflIII	ACRYGT	1 cut(s)	1227
AgeI	ACCGGT	2 cut(s)	843, 852
AjiI	CACGTC	1 cut(s)	1228
AjnI	CCWGG	1 cut(s)	1013
AjuI	GAANNNNNNNTTGG	2 cut(s)	1652, 1684
AluBI	AGCT	7 cut(s)	102, 129, 216, 685, 883, 1189, 2503
AluI	AGCT	7 cut(s)	102, 129, 216, 685, 883, 1189, 2503
Alw21I	GWGCWC	4 cut(s)	218, 687, 732, 2367
Alw26I	GTCTC	5 cut(s)	472, 682, 968, 1679, 1923
AlwI	GGATC	1 cut(s)	1043
Ama87I	CYCGRG	2 cut(s)	878, 1525
Aor13HI	TCCGGA	1 cut(s)	687
AoxI	GGCC	9 cut(s)	149, 297, 406, 448, 664, 756, 1074, 1535, 1881
ApaI	GGGCCC	1 cut(s)	668
ApeKI	GCWGC	6 cut(s)	129, 347, 1186, 1951, 2069, 2503
ApoI	RAATTY	8 cut(s)	389, 998, 1210, 1608, 1766, 2174, 2353, 2370
AseI	ATTAAT	1 cut(s)	2408
AsiGI	ACCGGT	2 cut(s)	843, 852
Asp700I	GAANNNNTTC	2 cut(s)	1424, 1769
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	2 cut(s)	72, 96
AvaI	CYCGRG	2 cut(s)	878, 1525
AvaII	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
BaeGI	GKGCMC	1 cut(s)	668
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	3 cut(s)	218, 668, 687
BbsI	GAAGAC	3 cut(s)	233, 1628, 2435
Bbv12I	GWGCWC	4 cut(s)	218, 687, 732, 2367
BbvI	GCAGC	6 cut(s)	116, 359, 1198, 1963, 2056, 2490
BccI	CCATC	6 cut(s)	623, 880, 1100, 1274, 1720, 1994
BceAI	ACGGC	6 cut(s)	164, 421, 544, 1257, 2105, 2448
BcgI	CGANNNNNNTGC	2 cut(s)	1700, 1734
BciT130I	CCWGG	1 cut(s)	1015
BcnI	CCSGG	1 cut(s)	701
BcoDI	GTCTC	5 cut(s)	472, 682, 968, 1679, 1923
BfaI	CTAG	1 cut(s)	2088
BfmI	CTRYAG	4 cut(s)	181, 238, 1531, 1653
BfuAI	ACCTGC	2 cut(s)	552, 770
BglII	AGATCT	2 cut(s)	396, 2437
BisI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
BlpI	GCTNAGC	1 cut(s)	2146
BlsI	GCNGC	9 cut(s)	131, 349, 446, 449, 482, 1188, 1953, 2071, 2505
Bme1390I	CCNGG	2 cut(s)	701, 1015
Bme18I	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
BmeT110I	CYCGRG	2 cut(s)	878, 1525
BmgBI	CACGTC	1 cut(s)	1228
BmgT120I	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
BmiI	GGNNCC	7 cut(s)	536, 537, 656, 665, 666, 857, 2167
BmrFI	CCNGG	2 cut(s)	701, 1015
BmrI	ACTGGG	2 cut(s)	670, 784
BmsI	GCATC	5 cut(s)	625, 940, 1033, 1321, 1704
BmuI	ACTGGG	2 cut(s)	670, 784
BpiI	GAAGAC	3 cut(s)	233, 1628, 2435
BpmI	CTGGAG	1 cut(s)	2256
Bpu1102I	GCTNAGC	1 cut(s)	2146
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	701
BsaBI	GATNNNNATC	2 cut(s)	252, 932
BsaHI	GRCGYC	1 cut(s)	2118
BsaI	GGTCTC	1 cut(s)	968
BsaJI	CCNNGG	7 cut(s)	403, 442, 723, 825, 1013, 1014, 2169
BsaWI	WCCGGW	7 cut(s)	13, 651, 687, 843, 852, 858, 1222
BsaXI	ACNNNNNCTCC	2 cut(s)	1376, 1406
Bsc4I	CCNNNNNNNGG	3 cut(s)	754, 865, 1544
Bse118I	RCCGGY	3 cut(s)	292, 843, 852
Bse1I	ACTGG	3 cut(s)	665, 671, 779
Bse3DI	GCAATG	2 cut(s)	1251, 1974
Bse8I	GATNNNNATC	2 cut(s)	252, 932
BseAI	TCCGGA	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	1015
BseDI	CCNNGG	7 cut(s)	403, 442, 723, 825, 1013, 1014, 2169
BseGI	GGATG	3 cut(s)	1048, 1945, 2007
BseJI	GATNNNNATC	2 cut(s)	252, 932
BseLI	CCNNNNNNNGG	3 cut(s)	754, 865, 1544
BseMI	GCAATG	2 cut(s)	1251, 1974
BseMII	CTCAG	6 cut(s)	182, 231, 386, 485, 979, 2214
BseNI	ACTGG	3 cut(s)	665, 671, 779
BseRI	GAGGAG	5 cut(s)	173, 587, 1133, 1951, 2345
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	6 cut(s)	116, 359, 1198, 1963, 2056, 2490
BseYI	CCCAGC	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	444
Bsh1285I	CGRYCG	2 cut(s)	463, 863
BshFI	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
BshTI	ACCGGT	2 cut(s)	843, 852
BsiEI	CGRYCG	2 cut(s)	463, 863
BsiHKAI	GWGCWC	4 cut(s)	218, 687, 732, 2367
BsiHKCI	CYCGRG	2 cut(s)	878, 1525
BslFI	GGGAC	5 cut(s)	156, 361, 548, 860, 2018
BslI	CCNNNNNNNGG	3 cut(s)	754, 865, 1544
BsmAI	GTCTC	5 cut(s)	472, 682, 968, 1679, 1923
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	5 cut(s)	156, 361, 548, 860, 2018
BsmI	GAATGC	1 cut(s)	945
BsnI	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
Bso31I	GGTCTC	1 cut(s)	968
BsoBI	CYCGRG	2 cut(s)	878, 1525
Bsp120I	GGGCCC	1 cut(s)	664
Bsp1286I	GDGCHC	5 cut(s)	218, 668, 687, 732, 2367
Bsp13I	TCCGGA	1 cut(s)	687
Bsp1407I	TGTACA	1 cut(s)	1026
Bsp143I	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
Bsp1720I	GCTNAGC	1 cut(s)	2146
BspANI	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
BspCNI	CTCAG	6 cut(s)	183, 230, 385, 484, 978, 2215
BspEI	TCCGGA	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	1134
BspLI	GGNNCC	7 cut(s)	536, 537, 656, 665, 666, 857, 2167
BspMAI	CTGCAG	2 cut(s)	185, 242
BspMI	ACCTGC	2 cut(s)	552, 770
BspPI	GGATC	1 cut(s)	1043
BspTNI	GGTCTC	1 cut(s)	968
BsrDI	GCAATG	2 cut(s)	1251, 1974
BsrFI	RCCGGY	3 cut(s)	292, 843, 852
BsrGI	TGTACA	1 cut(s)	1026
BsrI	ACTGG	3 cut(s)	665, 671, 779
BssAI	RCCGGY	3 cut(s)	292, 843, 852
BssECI	CCNNGG	7 cut(s)	403, 442, 723, 825, 1013, 1014, 2169
BssMI	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
BssNAI	GTATAC	1 cut(s)	2287
BssNI	GRCGYC	1 cut(s)	2118
BssT1I	CCWWGG	2 cut(s)	825, 2169
Bst1107I	GTATAC	1 cut(s)	2287
Bst2UI	CCWGG	1 cut(s)	1015
Bst4CI	ACNGT	7 cut(s)	439, 464, 499, 921, 1624, 1657, 2078
Bst6I	CTCTTC	2 cut(s)	458, 1821
BstACI	GRCGYC	1 cut(s)	2118
BstAUI	TGTACA	1 cut(s)	1026
BstC8I	GCNNGC	7 cut(s)	134, 416, 622, 668, 1719, 2085, 2152
BstDEI	CTNAG	8 cut(s)	191, 217, 372, 471, 965, 1276, 2146, 2223
BstDSI	CCRYGG	2 cut(s)	403, 442
BstF5I	GGATG	3 cut(s)	1048, 1945, 2007
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	6 cut(s)	399, 523, 1038, 1140, 1759, 2440
BstMAI	GTCTC	5 cut(s)	472, 682, 968, 1679, 1923
BstMBI	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
BstMCI	CGRYCG	2 cut(s)	463, 863
BstMWI	GCNNNNNNNGC	2 cut(s)	1241, 2151
BstNI	CCWGG	1 cut(s)	1015
BstNSI	RCATGY	2 cut(s)	2208, 2311
BstSCI	CCNGG	2 cut(s)	699, 1013
BstSFI	CTRYAG	4 cut(s)	181, 238, 1531, 1653
BstSLI	GKGCMC	1 cut(s)	668
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	6 cut(s)	116, 359, 1198, 1963, 2056, 2490
BstV2I	GAAGAC	3 cut(s)	233, 1628, 2435
BstX2I	RGATCY	2 cut(s)	396, 2437
BstXI	CCANNNNNNTGG	1 cut(s)	1895
BstYI	RGATCY	2 cut(s)	396, 2437
BstZ17I	GTATAC	1 cut(s)	2287
BsuRI	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
BtgI	CCRYGG	2 cut(s)	403, 442
BtgZI	GCGATG	2 cut(s)	555, 601
BtrI	CACGTC	1 cut(s)	1228
BtsCI	GGATG	3 cut(s)	1048, 1945, 2007
BtsI	GCAGTG	2 cut(s)	178, 247
BtsIMutI	CAGTG	6 cut(s)	120, 178, 247, 658, 772, 1662
BveI	ACCTGC	2 cut(s)	552, 770
Cac8I	GCNNGC	7 cut(s)	134, 416, 622, 668, 1719, 2085, 2152
CciI	TCATGA	1 cut(s)	1134
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	3 cut(s)	292, 843, 852
Cfr13I	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
Cfr42I	CCGCGG	1 cut(s)	445
CseI	GACGC	3 cut(s)	15, 241, 2126
Csp6I	GTAC	3 cut(s)	817, 1027, 1393
CspAI	ACCGGT	2 cut(s)	843, 852
CspCI	CAANNNNNGTGG	2 cut(s)	1677, 1712
CviAII	CATG	9 cut(s)	1039, 1135, 2012, 2201, 2205, 2308, 2318, 2389, 2419
CviQI	GTAC	3 cut(s)	817, 1027, 1393
DdeI	CTNAG	8 cut(s)	191, 217, 372, 471, 965, 1276, 2146, 2223
DpnI	GATC	6 cut(s)	398, 522, 1037, 1139, 1758, 2439
DpnII	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	3 cut(s)	149, 297, 406
Eam1104I	CTCTTC	2 cut(s)	458, 1821
EarI	CTCTTC	2 cut(s)	458, 1821
EciI	GGCGGA	3 cut(s)	686, 881, 1490
Ecl136II	GAGCTC	2 cut(s)	216, 685
Eco130I	CCWWGG	2 cut(s)	825, 2169
Eco24I	GRGCYC	3 cut(s)	218, 668, 687
Eco31I	GGTCTC	1 cut(s)	968
Eco47I	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
Eco53kI	GAGCTC	2 cut(s)	216, 685
Eco57I	CTGAAG	1 cut(s)	1622
Eco88I	CYCGRG	2 cut(s)	878, 1525
EcoICRI	GAGCTC	2 cut(s)	216, 685
EcoO109I	RGGNCCY	3 cut(s)	535, 664, 1882
EcoRI	GAATTC	1 cut(s)	2174
EcoRII	CCWGG	1 cut(s)	1013
EcoT14I	CCWWGG	2 cut(s)	825, 2169
EcoT22I	ATGCAT	1 cut(s)	2206
EcoT38I	GRGCYC	3 cut(s)	218, 668, 687
ErhI	CCWWGG	2 cut(s)	825, 2169
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	9 cut(s)	1042, 1138, 2015, 2204, 2208, 2311, 2321, 2392, 2422
FalI	AAGNNNNNCTT	4 cut(s)	1412, 1444, 1620, 1652
FaqI	GGGAC	5 cut(s)	156, 361, 548, 860, 2018
FatI	CATG	9 cut(s)	1038, 1134, 2011, 2200, 2204, 2307, 2317, 2388, 2418
FauI	CCCGC	3 cut(s)	629, 675, 1581
FauNDI	CATATG	1 cut(s)	1342
FblI	GTMKAC	1 cut(s)	2286
Fnu4HI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
FokI	GGATG	3 cut(s)	1055, 1952, 1994
FriOI	GRGCYC	3 cut(s)	218, 668, 687
Fsp4HI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
FspBI	CTAG	1 cut(s)	2088
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
GsaI	CCCAGC	1 cut(s)	514
GsuI	CTGGAG	1 cut(s)	2256
HaeIII	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
HgaI	GACGC	3 cut(s)	15, 241, 2126
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	2118
Hin1II	CATG	9 cut(s)	1042, 1138, 2015, 2204, 2208, 2311, 2321, 2392, 2422
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	7 cut(s)	34, 890, 928, 1523, 1660, 1860, 1958
HphI	GGTGA	2 cut(s)	72, 96
Hpy166II	GTNNAC	6 cut(s)	564, 1087, 1220, 1522, 2165, 2287
Hpy188I	TCNGA	8 cut(s)	220, 460, 682, 840, 938, 949, 1267, 1616
Hpy8I	GTNNAC	6 cut(s)	564, 1087, 1220, 1522, 2165, 2287
Hpy99I	CGWCG	4 cut(s)	150, 235, 587, 722
HpyAV	CCTTC	7 cut(s)	526, 1408, 1414, 1477, 1504, 1930, 2221
HpyCH4III	ACNGT	7 cut(s)	439, 464, 499, 921, 1624, 1657, 2078
HpyCH4IV	ACGT	1 cut(s)	1227
HpyCH4V	TGCA	9 cut(s)	183, 240, 943, 1186, 1235, 1346, 1721, 1951, 2204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1241, 2151
HpyF3I	CTNAG	8 cut(s)	191, 217, 372, 471, 965, 1276, 2146, 2223
HpySE526I	ACGT	1 cut(s)	1227
Hsp92I	GRCGYC	1 cut(s)	2118
Hsp92II	CATG	9 cut(s)	1042, 1138, 2015, 2204, 2208, 2311, 2321, 2392, 2422
HspAI	GCGC	1 cut(s)	176
KflI	GGGWCCC	1 cut(s)	535
Kpn2I	TCCGGA	1 cut(s)	687
KspI	CCGCGG	1 cut(s)	445
Kzo9I	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
LmnI	GCTCC	2 cut(s)	682, 690
Lsp1109I	GCAGC	6 cut(s)	116, 359, 1198, 1963, 2056, 2490
LweI	GCATC	5 cut(s)	625, 940, 1033, 1321, 1704
MaeI	CTAG	1 cut(s)	2088
MaeII	ACGT	1 cut(s)	1227
MalI	GATC	6 cut(s)	398, 522, 1037, 1139, 1758, 2439
MboI	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
MflI	RGATCY	2 cut(s)	396, 2437
MhlI	GDGCHC	5 cut(s)	218, 668, 687, 732, 2367
MlsI	TGGCCA	1 cut(s)	299
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	3 cut(s)	884, 1517, 1952
MmeI	TCCRAC	2 cut(s)	483, 873
Mox20I	TGGCCA	1 cut(s)	299
Mph1103I	ATGCAT	1 cut(s)	2206
MroI	TCCGGA	1 cut(s)	687
MroXI	GAANNNNTTC	2 cut(s)	1424, 1769
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	8 cut(s)	279, 360, 1008, 1251, 1832, 1926, 2375, 2408
MslI	CAYNNNNRTG	6 cut(s)	807, 938, 948, 1244, 1670, 2393
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	701, 1015
Mva1269I	GAATGC	1 cut(s)	945
MvaI	CCWGG	1 cut(s)	1015
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	1241, 2151
NciI	CCSGG	1 cut(s)	701
NdeI	CATATG	1 cut(s)	1342
NdeII	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
NlaIII	CATG	9 cut(s)	1042, 1138, 2015, 2204, 2208, 2311, 2321, 2392, 2422
NlaIV	GGNNCC	7 cut(s)	536, 537, 656, 665, 666, 857, 2167
NmeAIII	GCCGAG	3 cut(s)	501, 748, 933
NmuCI	GTSAC	4 cut(s)	306, 703, 2138, 2155
NsbI	TGCGCA	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	2206
NspI	RCATGY	2 cut(s)	2208, 2311
PagI	TCATGA	1 cut(s)	1134
PaqCI	CACCTGC	1 cut(s)	552
PasI	CCCWGGG	1 cut(s)	1014
PctI	GAATGC	1 cut(s)	945
PdmI	GAANNNNTTC	2 cut(s)	1424, 1769
PfeI	GAWTC	4 cut(s)	34, 928, 1660, 1860
PflFI	GACNNNGTC	3 cut(s)	464, 716, 872
PinAI	ACCGGT	2 cut(s)	843, 852
PkrI	GCNGC	9 cut(s)	131, 349, 446, 449, 482, 1188, 1953, 2071, 2505
PleI	GAGTC	3 cut(s)	884, 1517, 1952
PpsI	GAGTC	3 cut(s)	884, 1517, 1952
PpuMI	RGGWCCY	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	2408
PsiI	TTATAA	2 cut(s)	1605, 2031
Psp124BI	GAGCTC	2 cut(s)	218, 687
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	1013
PspFI	CCCAGC	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	1013
PspN4I	GGNNCC	7 cut(s)	536, 537, 656, 665, 666, 857, 2167
PspOMI	GGGCCC	1 cut(s)	664
PspPI	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
PspPPI	RGGWCCY	1 cut(s)	535
PstI	CTGCAG	2 cut(s)	185, 242
PsuI	RGATCY	2 cut(s)	396, 2437
PsyI	GACNNNGTC	3 cut(s)	464, 716, 872
RsaI	GTAC	3 cut(s)	818, 1028, 1394
RsaNI	GTAC	3 cut(s)	817, 1027, 1393
RseI	CAYNNNNRTG	6 cut(s)	807, 938, 948, 1244, 1670, 2393
SacI	GAGCTC	2 cut(s)	218, 687
SacII	CCGCGG	1 cut(s)	445
SaqAI	TTAA	8 cut(s)	279, 360, 1008, 1251, 1832, 1926, 2375, 2408
SatI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
Sau3AI	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
Sau96I	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
SchI	GAGTC	3 cut(s)	884, 1517, 1952
ScrFI	CCNGG	2 cut(s)	701, 1015
SduI	GDGCHC	5 cut(s)	218, 668, 687, 732, 2367
SfaNI	GCATC	5 cut(s)	625, 940, 1033, 1321, 1704
SfcI	CTRYAG	4 cut(s)	181, 238, 1531, 1653
Sfr303I	CCGCGG	1 cut(s)	445
SgrBI	CCGCGG	1 cut(s)	445
SinI	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
SmiMI	CAYNNNNRTG	6 cut(s)	807, 938, 948, 1244, 1670, 2393
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SspI	AATATT	1 cut(s)	2346
SspMI	CTAG	1 cut(s)	2088
SstI	GAGCTC	2 cut(s)	218, 687
StyD4I	CCNGG	2 cut(s)	699, 1013
StyI	CCWWGG	2 cut(s)	825, 2169
TaaI	ACNGT	7 cut(s)	439, 464, 499, 921, 1624, 1657, 2078
TaiI	ACGT	1 cut(s)	1230
TaqI	TCGA	4 cut(s)	19, 519, 633, 1566
TatI	WGTACW	1 cut(s)	1026
TauI	GCSGC	3 cut(s)	447, 450, 483
TfiI	GAWTC	4 cut(s)	34, 928, 1660, 1860
Tru1I	TTAA	8 cut(s)	279, 360, 1008, 1251, 1832, 1926, 2375, 2408
Tru9I	TTAA	8 cut(s)	279, 360, 1008, 1251, 1832, 1926, 2375, 2408
TscAI	CASTG	6 cut(s)	120, 185, 247, 665, 779, 1662
TseFI	GTSAC	4 cut(s)	306, 703, 2138, 2155
TseI	GCWGC	6 cut(s)	129, 347, 1186, 1951, 2069, 2503
Tsp45I	GTSAC	4 cut(s)	306, 703, 2138, 2155
TspRI	CASTG	6 cut(s)	120, 185, 247, 665, 779, 1662
Tth111I	GACNNNGTC	3 cut(s)	464, 716, 872
VpaK11BI	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
VspI	ATTAAT	1 cut(s)	2408
XapI	RAATTY	8 cut(s)	389, 998, 1210, 1608, 1766, 2174, 2353, 2370
XceI	RCATGY	2 cut(s)	2208, 2311
XmiI	GTMKAC	1 cut(s)	2286
XmnI	GAANNNNTTC	2 cut(s)	1424, 1769
XspI	CTAG	1 cut(s)	2088
Zsp2I	ATGCAT	1 cut(s)	2206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.