Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007852

Physical Location & Seq

Genomic Coordinates Forward (+)

1666326 .. 1667165

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCTGAGACAAGTAAAGTGGATAAGTTCTGCGAGATGCTTGCACAGATGGAGAAATGTGGTTTTCCTGTCATTGATCGATCTTTCGAAATTCTTCTCCCTTATTGTAGGAAAGGAGGATGGAGTAACAATGGGTTTGGAAGTGTTTGAAGAGTTAAAAGTGAAAGGTTATTATAGTTTAGGAATCTACAATATCTTTATGGAGGCCCTCCACAAATCTGGGAAAGTGAAAAAAGCATTGTCTCTCTTTAATGAAACGAAGGATGTGGGTTTGCAGCCCGACTCCTCTACTTACAGCATTGCCATAATGTGTTTTGTTGAAGATGGGGACATCCATGAGGCTTGTGCCTGTTATAATAAAATAATTGAGATGTCTTGTGTTCCTTTGATTGCTGCCTACCGTTCGCTTGCTAGAGGGCTTTGTAAAATTGGAGAGATTGACGCCGTTATGCTGTTACTTCGTGACTGCTTAGCCAGCGTGACAAGTGGACCCTTGGAATTCAAGTATTCTCTTACCATTCTTCATGCATGTAAATCAAATAATGCTGAGAAGGTGGTTGAGGTGCTAAATGAGATGATACAGCAGGGTTGTCCTCCAGATGATGTTGTATACTCTGCTATAATCTCTGGCATGTGTAAGCATGGTACAATAGAGGAGGCAAGAAAAATATTTTCAAATTTGAAAGAGCACAAAATTTTAACAGAAGCCAACATGATTATGTATGATGAAGTATTAATTGAACACATGAAGAAGAAGACGGCAGATCTGGTGGTGTCTGGTTTGAAGTTTTTTGGATTAGAAAACAAATTGAAAGCAAAGGGTTGTAAGCTGCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

280

Amino Acids

31.26

Weight (kDa)

7.94

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	62 - 105	8.7e-11	PPR repeat family
PPR_2	PF13041	173 - 213	1.7e-09	PPR repeat family
PPR_1	PF12854	196 - 225	1.4e-08	PPR repeat
PPR_2	PF13041	199 - 232	5.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20740
fragaria_vesca	FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120
malus_domestica	MD02G1297100.v1.1 MD07G1026900.v1.1
prunus_persica	Prupe.2G027000_v2.0.a1 Prupe.2G027000_v2.0.a1
pyrus_communis	pycom02g25030 pycom07g02030 pycom07g02070
rosa_chinensis	RchiOBHm_Chr1g0319391
rosa_laevigata	RLG00000030490
rosa_multiflora	Rmu_sc0005870.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328510
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039500 Rh1BG036300 Rh1CG038400 Rh1DG031400
rosa_wichuraiana	Rw1G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	609
AcsI	RAATTY	4 cut(s)	89, 497, 676, 693
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	646
AgsI	TTSAA	8 cut(s)	149, 320, 502, 675, 682, 740, 784, 811
AluBI	AGCT	1 cut(s)	829
AluI	AGCT	1 cut(s)	829
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	274, 392, 829
ApoI	RAATTY	4 cut(s)	89, 497, 676, 693
AseI	ATTAAT	1 cut(s)	734
Asp700I	GAANNNNTTC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	205, 488
AsuII	TTCGAA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	761
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	3 cut(s)	286, 379, 816
BccI	CCATC	3 cut(s)	42, 113, 317
BceAI	ACGGC	2 cut(s)	428, 774
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	411
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	3 cut(s)	275, 393, 830
BlpI	GCTNAGC	1 cut(s)	469
BlsI	GCNGC	3 cut(s)	276, 394, 831
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	205, 488
BmiI	GGNNCC	1 cut(s)	490
BmsI	GCATC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	469
Bpu14I	TTCGAA	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	297
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	3 cut(s)	124, 268, 330
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	537
BseRI	GAGGAG	2 cut(s)	274, 668
BseXI	GCAGC	3 cut(s)	286, 379, 816
BshFI	GGCC	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	3 cut(s)	75, 79, 763
Bsp1720I	GCTNAGC	1 cut(s)	469
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	538
BspDI	ATCGAT	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	3 cut(s)	75, 79, 763
BssNAI	GTATAC	1 cut(s)	610
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	492
Bst1107I	GTATAC	1 cut(s)	610
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	3 cut(s)	41, 408, 475
BstDEI	CTNAG	3 cut(s)	5, 469, 546
BstF5I	GGATG	3 cut(s)	124, 268, 330
BstKTI	GATC	3 cut(s)	78, 82, 766
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	3 cut(s)	75, 79, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNSI	RCATGY	2 cut(s)	531, 634
BstV1I	GCAGC	3 cut(s)	286, 379, 816
BstV2I	GAAGAC	1 cut(s)	761
BstX2I	RGATCY	1 cut(s)	763
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	763
BstZ17I	GTATAC	1 cut(s)	610
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	124, 268, 330
Cac8I	GCNNGC	3 cut(s)	41, 408, 475
Cfr13I	GGNCC	2 cut(s)	205, 488
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	645
CspCI	CAANNNNNGTGG	1 cut(s)	34
CviAII	CATG	7 cut(s)	335, 524, 528, 631, 641, 712, 745
CviJI	RGCY	7 cut(s)	206, 277, 341, 418, 473, 707, 829
CviKI_1	RGCY	7 cut(s)	206, 277, 341, 418, 473, 707, 829
CviQI	GTAC	1 cut(s)	645
DdeI	CTNAG	3 cut(s)	5, 469, 546
DpnI	GATC	3 cut(s)	77, 81, 765
DpnII	GATC	3 cut(s)	75, 79, 763
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	7 cut(s)	338, 527, 531, 634, 644, 715, 748
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	7 cut(s)	334, 523, 527, 630, 640, 711, 744
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	3 cut(s)	275, 393, 830
FokI	GGATG	3 cut(s)	131, 275, 317
Fsp4HI	GCNGC	3 cut(s)	275, 393, 830
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	3 cut(s)	275, 393, 830
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	206
HgaI	GACGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	7 cut(s)	338, 527, 531, 634, 644, 715, 748
HinfI	GANTC	2 cut(s)	183, 281
Hpy166II	GTNNAC	2 cut(s)	488, 610
Hpy188III	TCNNGA	2 cut(s)	461, 596
Hpy8I	GTNNAC	2 cut(s)	488, 610
HpyAV	CCTTC	2 cut(s)	253, 544
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4V	TGCA	3 cut(s)	43, 274, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpyF3I	CTNAG	3 cut(s)	5, 469, 546
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	7 cut(s)	338, 527, 531, 634, 644, 715, 748
Kzo9I	GATC	3 cut(s)	75, 79, 763
LpnPI	CCDG	9 cut(s)	80, 204, 361, 487, 569, 609, 612, 752, 762
Lsp1109I	GCAGC	3 cut(s)	286, 379, 816
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	4 cut(s)	124, 453, 461, 478
MalI	GATC	3 cut(s)	77, 81, 765
MboI	GATC	3 cut(s)	75, 79, 763
MboII	GAAGA	7 cut(s)	85, 161, 332, 512, 760, 763, 766
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	8 cut(s)	89, 363, 426, 497, 676, 693, 735, 806
MlyI	GAGTC	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	4 cut(s)	155, 249, 698, 734
MslI	CAYNNNNRTG	1 cut(s)	716
MwoI	GCNNNNNNNGC	1 cut(s)	474
NdeII	GATC	3 cut(s)	75, 79, 763
NlaIII	CATG	7 cut(s)	338, 527, 531, 634, 644, 715, 748
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	461, 478
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	2 cut(s)	531, 634
NspV	TTCGAA	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	276, 394, 831
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	734
PsiI	TTATAA	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	205, 488
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	1 cut(s)	646
RsaNI	GTAC	1 cut(s)	645
RseI	CAYNNNNRTG	1 cut(s)	716
SaqAI	TTAA	4 cut(s)	155, 249, 698, 734
SatI	GCNGC	3 cut(s)	275, 393, 830
Sau3AI	GATC	3 cut(s)	75, 79, 763
Sau96I	GGNCC	2 cut(s)	205, 488
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	690
SetI	ASST	4 cut(s)	169, 555, 564, 831
SfaNI	GCATC	1 cut(s)	26
SfuI	TTCGAA	1 cut(s)	86
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	716
Sse9I	AATT	8 cut(s)	89, 363, 426, 497, 676, 693, 735, 806
SspI	AATATT	1 cut(s)	669
SspMI	CTAG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	78, 86
TasI	AATT	8 cut(s)	89, 363, 426, 497, 676, 693, 735, 806
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	4 cut(s)	155, 249, 698, 734
Tru9I	TTAA	4 cut(s)	155, 249, 698, 734
TseFI	GTSAC	2 cut(s)	461, 478
TseI	GCWGC	3 cut(s)	274, 392, 829
Tsp45I	GTSAC	2 cut(s)	461, 478
TspDTI	ATGAA	4 cut(s)	267, 512, 741, 761
VpaK11BI	GGWCC	1 cut(s)	488
VspI	ATTAAT	1 cut(s)	734
XapI	RAATTY	4 cut(s)	89, 497, 676, 693
XceI	RCATGY	2 cut(s)	531, 634
XmiI	GTMKAC	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	1 cut(s)	411
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.