Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007852

Physical Location & Seq

Genomic Coordinates Reverse (-)

35239575 .. 35241757

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1297100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGACTCGCAGGGCAAACCGCCCAGCGAGAAACAGTTTGAGATTCTCATCAGAATGCACTCTGATGCTAATAGAGGTCTTAGGGTTTATTATGTGTATGAAAAAATGAAGAAATTTGCGGTTAAACCTAGGGTTTTCTTGTACAATAGGATCATGGATGCGTTGGCGAAAACGGGTTATTTGGATTTGGCGTTATTCGTTTACGAAGATTTTCGTGGTGATGGATTGGTGGAGGAGAGTGTTACTTTCATGATCTTAATAAAGAGTATGTGTAAAATGGGAAGAATTGATGAAATGTTGCAGCTTTTGGAGAGAATGAGGGCGAATTTGTGCAAACCGGACGTGTTTGCATACACGGCAATGATTAAGGTTTTGCTTTCGGAGGGAAACTTGGATGGGTGTTTGAGGGTTTGGGAGGAAATGAAGAGAGAGAGGGTTGAGGCAGACGCTATGGCATATGTAACTCTGGTTACAGGGTTGTGTACGGGTGGAAGGGTGGAGAAAGGGTACGAGTTGTTTAGGGAAATGAAGGCAAAGGGTTTCTTGATTGATAGAGCAATTTATGGGGTGTTGGTTGAGGGGTTTGTGGCAGACAAGAAGGTTGGGGTGGCGTGTGATTTGTTGAAGGATTTGGTGGATTCGGGGTATAGGGCAGATTTGGGGATATATAATTCTCCTATCGAGGGTTTATGTAATGTGAAGAGGGTTGATAAGGCTTATAAGATTTTCCGAGTAACAGTTCAAGAGGGTCTTCAGCCAGAATTCGCTACGGTGAATCCCATTTTGGTGTTCTACGTTGAGACAAGAAGAATGGATAAGTTATGCGAGATGCTTGCACAGATGGAGAAATTTGGTTTTCCTGTTATTGATGATCTTTCGAAATTCTTCTCCTTTACGAAAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

303

Amino Acids

34.67

Weight (kDa)

8.33

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	1 - 113	1.2e-07	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	51 - 175	3e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	80 - 125	3.4e-11	PPR repeat family
PPR_1	PF12854	80 - 107	6e-06	PPR repeat
PPR_long	PF17177	96 - 186	2.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	113 - 161	1.1e-11	PPR repeat family
PPR_1	PF12854	146 - 177	3.7e-06	PPR repeat
PPR_2	PF13041	149 - 195	1.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20740
fragaria_vesca	FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120
malus_domestica	MD02G1297100.v1.1 MD07G1026900.v1.1
prunus_persica	Prupe.2G027000_v2.0.a1 Prupe.2G027000_v2.0.a1
pyrus_communis	pycom02g25030 pycom07g02030 pycom07g02070
rosa_chinensis	RchiOBHm_Chr1g0319391
rosa_laevigata	RLG00000030490
rosa_multiflora	Rmu_sc0005870.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328510
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039500 Rh1BG036300 Rh1CG038400 Rh1DG031400
rosa_wichuraiana	Rw1G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	720
AciI	CCGC	2 cut(s)	20, 119
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	5 cut(s)	113, 325, 761, 848, 881
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	3 cut(s)	143, 484, 509
AfiI	CCNNNNNNNGG	1 cut(s)	683
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	625, 743
AjiI	CACGTC	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	794
AlwI	GGATC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	5 cut(s)	113, 325, 761, 848, 881
Asp700I	GAANNNNTTC	2 cut(s)	210, 884
AspA2I	CCTAGG	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	230, 784
AsuII	TTCGAA	1 cut(s)	878
AvrII	CCTAGG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	215, 389, 835
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	815, 849
BcoDI	GTCTC	1 cut(s)	794
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	302
BlnI	CCTAGG	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	303
BmgBI	CACGTC	1 cut(s)	343
BmsI	GCATC	3 cut(s)	55, 148, 819
BpiI	GAAGAC	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	878
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	163, 400
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMI	GCAATG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	1 cut(s)	794
BsmI	GAATGC	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	878
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	150, 252, 871
BspACI	CCGC	2 cut(s)	20, 119
BspHI	TCATGA	1 cut(s)	249
BspPI	GGATC	1 cut(s)	158
BspT104I	TTCGAA	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	366
BsrGI	TGTACA	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	3 cut(s)	150, 252, 871
BssT1I	CCWWGG	1 cut(s)	128
Bst4CI	ACNGT	3 cut(s)	36, 739, 772
Bst6I	CTCTTC	2 cut(s)	419, 695
BstAUI	TGTACA	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	878
BstC8I	GCNNGC	1 cut(s)	834
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	163, 400
BstKTI	GATC	3 cut(s)	153, 255, 874
BstMAI	GTCTC	1 cut(s)	794
BstMBI	GATC	3 cut(s)	150, 252, 871
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	743
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	163, 400
Cac8I	GCNNGC	1 cut(s)	834
CciI	TCATGA	1 cut(s)	249
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	3 cut(s)	142, 483, 508
CviAII	CATG	2 cut(s)	154, 250
CviJI	RGCY	3 cut(s)	304, 716, 757
CviKI_1	RGCY	3 cut(s)	304, 716, 757
CviQI	GTAC	3 cut(s)	142, 483, 508
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	3 cut(s)	152, 254, 873
DpnII	GATC	3 cut(s)	150, 252, 871
Eam1104I	CTCTTC	2 cut(s)	419, 695
EarI	CTCTTC	2 cut(s)	419, 695
Eco130I	CCWWGG	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	761
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	2 cut(s)	157, 253
FalI	AAGNNNNNCTT	4 cut(s)	527, 559, 735, 767
FatI	CATG	2 cut(s)	153, 249
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	2 cut(s)	170, 407
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	302
GsaI	CCCAGC	1 cut(s)	27
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	455
Hin1II	CATG	2 cut(s)	157, 253
HinfI	GANTC	4 cut(s)	5, 43, 638, 775
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	230, 784
Hpy166II	GTNNAC	2 cut(s)	202, 483
Hpy188I	TCNGA	4 cut(s)	53, 64, 382, 731
Hpy188III	TCNNGA	3 cut(s)	250, 544, 743
Hpy8I	GTNNAC	2 cut(s)	202, 483
HpyAV	CCTTC	4 cut(s)	486, 523, 592, 619
HpyCH4III	ACNGT	3 cut(s)	36, 739, 772
HpyCH4IV	ACGT	2 cut(s)	342, 795
HpyCH4V	TGCA	5 cut(s)	58, 301, 333, 350, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	342, 795
Hsp92II	CATG	2 cut(s)	157, 253
Kzo9I	GATC	3 cut(s)	150, 252, 871
LpnPI	CCDG	6 cut(s)	37, 351, 452, 459, 771, 873
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	3 cut(s)	55, 148, 819
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	2 cut(s)	342, 795
MaeIII	GTNAC	4 cut(s)	241, 460, 469, 733
MalI	GATC	3 cut(s)	152, 254, 873
MboI	GATC	3 cut(s)	150, 252, 871
MboII	GAAGA	8 cut(s)	121, 218, 294, 436, 712, 743, 819, 877
MluCI	AATT	8 cut(s)	113, 285, 325, 558, 670, 761, 848, 881
MroXI	GAANNNNTTC	2 cut(s)	210, 884
MseI	TTAA	3 cut(s)	123, 257, 366
MslI	CAYNNNNRTG	4 cut(s)	53, 63, 359, 785
MspI	CCGG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	3 cut(s)	150, 252, 871
NlaIII	CATG	2 cut(s)	157, 253
NspV	TTCGAA	1 cut(s)	878
PagI	TCATGA	1 cut(s)	249
PctI	GAATGC	1 cut(s)	60
PdmI	GAANNNNTTC	2 cut(s)	210, 884
PfeI	GAWTC	3 cut(s)	43, 638, 775
PkrI	GCNGC	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	720
PspFI	CCCAGC	1 cut(s)	23
RsaI	GTAC	3 cut(s)	143, 484, 509
RsaNI	GTAC	3 cut(s)	142, 483, 508
RseI	CAYNNNNRTG	4 cut(s)	53, 63, 359, 785
SaqAI	TTAA	3 cut(s)	123, 257, 366
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	3 cut(s)	150, 252, 871
SetI	ASST	7 cut(s)	79, 130, 306, 345, 372, 603, 798
SfaNI	GCATC	3 cut(s)	55, 148, 819
SfuI	TTCGAA	1 cut(s)	878
SmiMI	CAYNNNNRTG	4 cut(s)	53, 63, 359, 785
Sse9I	AATT	8 cut(s)	113, 285, 325, 558, 670, 761, 848, 881
SsiI	CCGC	2 cut(s)	20, 119
SspMI	CTAG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	3 cut(s)	36, 739, 772
TaiI	ACGT	2 cut(s)	345, 798
TaqI	TCGA	2 cut(s)	681, 878
TasI	AATT	8 cut(s)	113, 285, 325, 558, 670, 761, 848, 881
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	3 cut(s)	43, 638, 775
Tru1I	TTAA	3 cut(s)	123, 257, 366
Tru9I	TTAA	3 cut(s)	123, 257, 366
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	6 cut(s)	114, 122, 238, 306, 437, 542
XapI	RAATTY	5 cut(s)	113, 325, 761, 848, 881
XmaJI	CCTAGG	1 cut(s)	128
XmnI	GAANNNNTTC	2 cut(s)	210, 884
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.