Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007852

Physical Location & Seq

Genomic Coordinates Forward (+)

4854477 .. 4858513

Gene Structure 4037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG036300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGCCCCCTCCTCCCAAGTTCTCCTTATTCTACGGCCACCGCAACCCCTCCCGGAACCGCCCCACCGTCCGCGGCAGCCGCCTCTCTCCCCCAAAACCCAACCCCACCCCAACTCAATCCCAGCCCTTCGATCTCTCCAAGTGGGACCCCCACCAATCTCCGCCGTCCACCACCCCCAACCCCAACCCCGCCGTCCCCCTCTCCTTCCTCTCCCCCATCGCCCGCTTCATCCTCGACGCCTTCCGCAAGAACCGCAACCGCTGGGGCCCGCCGGTCGTCTCGGAGCTCCAGAAGCTCCGCCGCGTCACCCCCGACCTGGTCGCCGAGGTCCTCAAGGTCCAAAACGACCCCGTTTCGGCCTCCAAGCTCTTCCACTGGGCAGGTAAGCAAAAGGGTTTCAAGCACACCTTCGCTTCCTACAATGCCCTGACCTATTGCCTGAACCGGGCCCACCGGTTCAGGTCGGCCGACCAAGTCCCCGACTTGATGGAGTCTCAGGGGAAACCCCCCACCGAGAAACAGTTTGAGATTCTGATCAGAATGCACTCTGACGCCAATAGAGGTCTTAGGGTTTATCATGTCTATGAGAAGATGAAGAAGTTTGGGGTTAAACCCAGGGTTTATTTGTACAATAGGGTGATGGATGCATTGGTCAAAACGGGTCATTTGGATTTGGCATTGTCGGTTTACGACGATTTTCGGGGTGATGGGCTGGTGGAGGAGAGTGTGACTTTTATGATTTTGATAAAGGGGATGTGTAAGTTTGGGAGAGTTGATGAAATGTTGGGACTTTTGGATAGAATGAGGGTGAGTTTGTGTAAGCCGGACGTGTTTGCTTACACCGCAATGATAAAGGTGATGGTTTCGGAGGGGGATTTGGATGGTTGTTTGAAGGTTTGGGAGGAAATGAGGAGGGATAGAGTTGAGGCGGATGCTATGGCGTATGCGACTCTAGTTACAGGGTTGTGTAAAGGAGGGAGGGTGGAGAAGGGGTATGAGTTGTTTAGGGAGATGAAGGAGAAGGGTTTTTTGATTGATAGAGCGATTTATGGGGTGCTGGTTGAGGGGTTTGTGGAAGACAGGAAGGTTGGGGCAGCGTGTGATTTGTTGAAGGATTTGGTGGGATCAGGGTATAGAGCAGATTTGGGGATATATAATTCTCTAATCAAGGGTTTATGTGATGTTAAGCGGGTTGATAAGGCTTATAAGCTTTTCCGAGTTGCAGTTCAAGAGGGTCTTGGGCCGGATTTTGCGACGGTGAATCCCATTCTGGTGTCTTATGCTGAGATGAGAAAAATGGATAACTTTTGCGAGTTGCTTGCACAGATGGAGAAATGTGGTTGTCCTGTTATTGATGATCTTTCGAAATTCTTCTCCAATGTTGCTGAAAAGGAGGATGGAGTCATGATGGCTTTGGAAGTGTTTGAAGACTTGAAAGTTAAAAATTATTCTAGTGTTGCGATCTACAATTTCCTTATTGCCGGCCTCCACAAATTTGGGAAAGTGAAGAAAGCATTATCCCTCTTTGATGAGATGAAGAGTTTTGATTTCCAGCCTGACTCGTCCACTTATAGCTCTGCGATTATGTGTTATATTGAAGAAGGGGATCTCCATGAAGCTTGTGCCTGTCATAATAAGATAATTGAGATGTCTTGTGTTCCTTCTATTGCTGCCTATCGCTCTCTTGCTAAAGGGCTTTTCAATGTTGGAGAGATTGATGCAGTTATGCTGCTAGTCCGGGACTGCTTAGCCAGTGTGACAAGTGGGCCCATGACATTCAAGTATTCTCTTACCGTTCTCCATGCATGTAGATCCAATAATGCTGAGAAGGTGATTGATGTACTGAATGAGATGATGCAGCAGGGTTGTCCACCAGATCATGTTATATACTCTGCTATAATCTCTGGCATGTGTAAACATGGCACAATAGAGGAGGCAAGGAAGGTATTTTCAAATTTGAAAGAGCGCAAACTTATAACAGAAGCCAACATGATTGTGTATGATGATATGTTAATTGAACACATGAAGAAGAAGACAGCAGATCTGGTAATGTCAGGGTTGAAGTTTTTTGGTTTAGAATCCAAGCTGAAAGCAAAGGGTTGTAAACTGCTGTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

706

Amino Acids

79.41

Weight (kDa)

8.79

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	131 - 273	8.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	242 - 286	4.6e-10	PPR repeat family
PPR_2	PF13041	275 - 324	5.1e-11	PPR repeat family
PPR_1	PF12854	308 - 339	1.3e-07	PPR repeat
PPR_2	PF13041	311 - 358	8.6e-08	PPR repeat family
PPR	PF01535	315 - 343	8.8e-07	PPR repeat
PPR_1	PF12854	377 - 406	1.1e-06	PPR repeat
PPR_2	PF13041	383 - 421	3.7e-06	PPR repeat family
PPR_2	PF13041	485 - 528	1.8e-11	PPR repeat family
PPR	PF01535	488 - 516	6.9e-06	PPR repeat
PPR_1	PF12854	622 - 651	5.6e-09	PPR repeat
PPR_2	PF13041	625 - 657	4.2e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20740
fragaria_vesca	FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120
malus_domestica	MD02G1297100.v1.1 MD07G1026900.v1.1
prunus_persica	Prupe.2G027000_v2.0.a1 Prupe.2G027000_v2.0.a1
pyrus_communis	pycom02g25030 pycom07g02030 pycom07g02070
rosa_chinensis	RchiOBHm_Chr1g0319391
rosa_laevigata	RLG00000030490
rosa_multiflora	Rmu_sc0005870.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328510
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039500 Rh1BG036300 Rh1CG038400 Rh1DG031400
rosa_wichuraiana	Rw1G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1206, 1976
Acc36I	ACCTGC	1 cut(s)	371
AccII	CGCG	2 cut(s)	72, 303
AclWI	GGATC	3 cut(s)	1132, 1614, 1806
AcoI	YGGCCR	2 cut(s)	34, 465
AcsI	RAATTY	3 cut(s)	1367, 1493, 1954
AcyI	GRCGYC	2 cut(s)	237, 552
AfaI	GTAC	2 cut(s)	629, 1842
AfiI	CCNNNNNNNGG	3 cut(s)	316, 355, 445
AflIII	ACRYGT	1 cut(s)	828
AgeI	ACCGGT	1 cut(s)	453
AjiI	CACGTC	1 cut(s)	829
AjnI	CCWGG	2 cut(s)	315, 614
AluBI	AGCT	7 cut(s)	286, 295, 367, 1210, 1575, 1619, 2086
AluI	AGCT	7 cut(s)	286, 295, 367, 1210, 1575, 1619, 2086
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	283, 498
AlwI	GGATC	3 cut(s)	1132, 1614, 1806
AoxI	GGCC	8 cut(s)	34, 265, 357, 447, 465, 1241, 1483, 1766
ApaI	GGGCCC	3 cut(s)	269, 451, 1770
ApeKI	GCWGC	5 cut(s)	75, 1094, 1670, 1729, 1858
ApoI	RAATTY	3 cut(s)	1367, 1493, 1954
AsiGI	ACCGGT	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	1370
AspLEI	GCGC	1 cut(s)	1968
AsuC2I	CCSGG	3 cut(s)	52, 446, 1739
AsuHPI	GGTGA	7 cut(s)	298, 649, 716, 820, 868, 1270, 1843
AsuII	TTCGAA	1 cut(s)	1364
AvaII	GGWCC	3 cut(s)	145, 328, 337
BaeGI	GKGCMC	3 cut(s)	269, 451, 1770
BanII	GRGCYC	4 cut(s)	269, 288, 451, 1770
BbsI	GAAGAC	3 cut(s)	1083, 1434, 2039
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	5 cut(s)	87, 1106, 1657, 1716, 1870
BccI	CCATC	9 cut(s)	224, 481, 634, 701, 853, 875, 1321, 1391, 1402
BceAI	ACGGC	3 cut(s)	49, 148, 176
BcgI	CGANNNNNNTGC	2 cut(s)	1301, 1335
BciT130I	CCWGG	2 cut(s)	317, 616
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	3 cut(s)	52, 446, 1739
BcoDI	GTCTC	2 cut(s)	283, 498
BfaI	CTAG	3 cut(s)	953, 1452, 1733
BfuAI	ACCTGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	2041
BisI	GCNGC	8 cut(s)	73, 76, 79, 301, 1095, 1671, 1730, 1859
BlpI	GCTNAGC	1 cut(s)	1747
BlsI	GCNGC	8 cut(s)	74, 77, 80, 302, 1096, 1672, 1731, 1860
Bme1390I	CCNGG	5 cut(s)	52, 317, 446, 616, 1739
Bme18I	GGWCC	3 cut(s)	145, 328, 337
BmgBI	CACGTC	1 cut(s)	829
BmiI	GGNNCC	7 cut(s)	56, 146, 147, 266, 267, 449, 1768
BmrFI	CCNGG	5 cut(s)	52, 317, 446, 616, 1739
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	4 cut(s)	634, 922, 1708, 1845
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	3 cut(s)	1083, 1434, 2039
BpmI	CTGGAG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	1747
Bpu14I	TTCGAA	1 cut(s)	1364
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	3 cut(s)	52, 446, 1739
BsaBI	GATNNNNATC	1 cut(s)	533
BsaHI	GRCGYC	2 cut(s)	237, 552
BsaJI	CCNNGG	4 cut(s)	70, 324, 614, 615
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	4 cut(s)	966, 977, 996, 1007
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 355, 445
Bse118I	RCCGGY	3 cut(s)	271, 453, 1481
Bse1I	ACTGG	2 cut(s)	380, 1752
Bse3DI	GCAATG	1 cut(s)	852
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	317, 616
BseDI	CCNNGG	4 cut(s)	70, 324, 614, 615
BseGI	GGATG	6 cut(s)	228, 649, 759, 886, 937, 1402
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	3 cut(s)	316, 355, 445
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	3 cut(s)	509, 1275, 1815
BseNI	ACTGG	2 cut(s)	380, 1752
BseRI	GAGGAG	3 cut(s)	734, 925, 1946
BseSI	GKGCMC	3 cut(s)	269, 451, 1770
BseX3I	CGGCCG	1 cut(s)	465
BseXI	GCAGC	5 cut(s)	87, 1106, 1657, 1716, 1870
BseYI	CCCAGC	2 cut(s)	120, 261
Bsh1236I	CGCG	2 cut(s)	72, 303
Bsh1285I	CGRYCG	2 cut(s)	276, 468
BshFI	GGCC	8 cut(s)	36, 267, 359, 449, 467, 1243, 1485, 1768
BshTI	ACCGGT	1 cut(s)	453
BsiEI	CGRYCG	2 cut(s)	276, 468
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	8 cut(s)	52, 272, 445, 454, 824, 1244, 1482, 1738
BslFI	GGGAC	5 cut(s)	158, 179, 461, 801, 1754
BslI	CCNNNNNNNGG	3 cut(s)	316, 355, 445
BsmAI	GTCTC	2 cut(s)	283, 498
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	5 cut(s)	158, 179, 461, 801, 1754
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	8 cut(s)	36, 267, 359, 449, 467, 1243, 1485, 1768
Bsp119I	TTCGAA	1 cut(s)	1364
Bsp120I	GGGCCC	3 cut(s)	265, 447, 1766
Bsp1286I	GDGCHC	4 cut(s)	269, 288, 451, 1770
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
Bsp1720I	GCTNAGC	1 cut(s)	1747
BspANI	GGCC	8 cut(s)	36, 267, 359, 449, 467, 1243, 1485, 1768
BspCNI	CTCAG	3 cut(s)	508, 1276, 1816
BspFNI	CGCG	2 cut(s)	72, 303
BspHI	TCATGA	1 cut(s)	1404
BspLI	GGNNCC	7 cut(s)	56, 146, 147, 266, 267, 449, 1768
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	3 cut(s)	1132, 1614, 1806
BspQI	GCTCTTC	1 cut(s)	374
BspT104I	TTCGAA	1 cut(s)	1364
BsrDI	GCAATG	1 cut(s)	852
BsrFI	RCCGGY	3 cut(s)	271, 453, 1481
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	2 cut(s)	380, 1752
BssAI	RCCGGY	3 cut(s)	271, 453, 1481
BssECI	CCNNGG	4 cut(s)	70, 324, 614, 615
BssMI	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
BssNI	GRCGYC	2 cut(s)	237, 552
Bst2UI	CCWGG	2 cut(s)	317, 616
Bst4CI	ACNGT	4 cut(s)	67, 522, 1258, 1795
Bst6I	CTCTTC	2 cut(s)	374, 1532
BstACI	GRCGYC	2 cut(s)	237, 552
BstAUI	TGTACA	1 cut(s)	627
BstBI	TTCGAA	1 cut(s)	1364
BstC8I	GCNNGC	4 cut(s)	223, 269, 1320, 1483
BstDEI	CTNAG	5 cut(s)	495, 566, 1284, 1747, 1824
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	6 cut(s)	228, 649, 759, 886, 937, 1402
BstFNI	CGCG	2 cut(s)	72, 303
BstHHI	GCGC	1 cut(s)	1968
BstKTI	GATC	9 cut(s)	133, 537, 1127, 1360, 1464, 1609, 1814, 1879, 2044
BstMAI	GTCTC	2 cut(s)	283, 498
BstMBI	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
BstMCI	CGRYCG	2 cut(s)	276, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 252, 292, 842
BstNI	CCWGG	2 cut(s)	317, 616
BstNSI	RCATGY	2 cut(s)	1809, 1912
BstSCI	CCNGG	5 cut(s)	50, 315, 444, 614, 1737
BstSLI	GKGCMC	3 cut(s)	269, 451, 1770
BstUI	CGCG	2 cut(s)	72, 303
BstV1I	GCAGC	5 cut(s)	87, 1106, 1657, 1716, 1870
BstV2I	GAAGAC	3 cut(s)	1083, 1434, 2039
BstX2I	RGATCY	3 cut(s)	1606, 1811, 2041
BstXI	CCANNNNNNTGG	1 cut(s)	1496
BstYI	RGATCY	3 cut(s)	1606, 1811, 2041
BstZI	CGGCCG	1 cut(s)	465
BsuRI	GGCC	8 cut(s)	36, 267, 359, 449, 467, 1243, 1485, 1768
BtgI	CCRYGG	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	202
BtrI	CACGTC	1 cut(s)	829
BtsCI	GGATG	6 cut(s)	228, 649, 759, 886, 937, 1402
BtsIMutI	CAGTG	2 cut(s)	373, 1759
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	4 cut(s)	223, 269, 1320, 1483
CciI	TCATGA	1 cut(s)	1404
CfoI	GCGC	1 cut(s)	1968
Cfr10I	RCCGGY	3 cut(s)	271, 453, 1481
Cfr42I	CCGCGG	1 cut(s)	73
CseI	GACGC	3 cut(s)	245, 292, 560
CsiI	ACCWGGT	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	628, 1841
CspAI	ACCGGT	1 cut(s)	453
CviQI	GTAC	2 cut(s)	628, 1841
DdeI	CTNAG	5 cut(s)	495, 566, 1284, 1747, 1824
DpnI	GATC	9 cut(s)	132, 536, 1126, 1359, 1463, 1608, 1813, 1878, 2043
DpnII	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
EaeI	YGGCCR	2 cut(s)	34, 465
EagI	CGGCCG	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	374, 1532
EarI	CTCTTC	2 cut(s)	374, 1532
EciI	GGCGGA	3 cut(s)	150, 287, 944
Ecl136II	GAGCTC	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	465
Eco24I	GRGCYC	4 cut(s)	269, 288, 451, 1770
Eco47I	GGWCC	3 cut(s)	145, 328, 337
Eco52I	CGGCCG	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	3 cut(s)	145, 265, 328
EcoRII	CCWGG	2 cut(s)	315, 614
EcoT22I	ATGCAT	2 cut(s)	649, 1807
EcoT38I	GRGCYC	4 cut(s)	269, 288, 451, 1770
Esp3I	CGTCTC	1 cut(s)	283
FalI	AAGNNNNNCTT	6 cut(s)	8, 40, 392, 424, 1221, 1253
FaqI	GGGAC	5 cut(s)	158, 179, 461, 801, 1754
FauI	CCCGC	4 cut(s)	196, 230, 276, 1182
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	8 cut(s)	73, 76, 79, 301, 1095, 1671, 1730, 1859
FokI	GGATG	6 cut(s)	215, 656, 766, 893, 944, 1409
FriOI	GRGCYC	4 cut(s)	269, 288, 451, 1770
Fsp4HI	GCNGC	8 cut(s)	73, 76, 79, 301, 1095, 1671, 1730, 1859
FspBI	CTAG	3 cut(s)	953, 1452, 1733
GlaI	GCGC	1 cut(s)	1967
GluI	GCNGC	8 cut(s)	73, 76, 79, 301, 1095, 1671, 1730, 1859
GsaI	CCCAGC	2 cut(s)	124, 265
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	8 cut(s)	36, 267, 359, 449, 467, 1243, 1485, 1768
HapII	CCGG	8 cut(s)	52, 272, 445, 454, 824, 1244, 1482, 1738
HgaI	GACGC	3 cut(s)	245, 292, 560
HhaI	GCGC	1 cut(s)	1968
Hin1I	GRCGYC	2 cut(s)	237, 552
Hin6I	GCGC	1 cut(s)	1966
HinP1I	GCGC	1 cut(s)	1966
HindIII	AAGCTT	2 cut(s)	1208, 1617
HinfI	GANTC	7 cut(s)	491, 529, 949, 1261, 1401, 1559, 2078
HpaII	CCGG	8 cut(s)	52, 272, 445, 454, 824, 1244, 1482, 1738
HphI	GGTGA	7 cut(s)	298, 649, 716, 820, 868, 1270, 1843
Hpy166II	GTNNAC	6 cut(s)	168, 688, 1566, 1871, 1916, 2105
Hpy188I	TCNGA	6 cut(s)	283, 534, 539, 550, 868, 1217
Hpy188III	TCNNGA	3 cut(s)	289, 1229, 1405
Hpy8I	GTNNAC	6 cut(s)	168, 688, 1566, 1871, 1916, 2105
Hpy99I	CGWCG	3 cut(s)	239, 695, 1258
HpyCH4III	ACNGT	4 cut(s)	67, 522, 1258, 1795
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	7 cut(s)	544, 647, 1223, 1322, 1721, 1805, 1858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 252, 292, 842
HpyF3I	CTNAG	5 cut(s)	495, 566, 1284, 1747, 1824
HpySE526I	ACGT	1 cut(s)	828
Hsp92I	GRCGYC	2 cut(s)	237, 552
HspAI	GCGC	1 cut(s)	1966
KflI	GGGWCCC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	1481
KroNI	GCCGGC	1 cut(s)	1483
Ksp22I	TGATCA	1 cut(s)	534
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
LguI	GCTCTTC	1 cut(s)	374
LmnI	GCTCC	3 cut(s)	283, 291, 300
Lsp1109I	GCAGC	5 cut(s)	87, 1106, 1657, 1716, 1870
LweI	GCATC	4 cut(s)	634, 922, 1708, 1845
MabI	ACCWGGT	1 cut(s)	315
MaeI	CTAG	3 cut(s)	953, 1452, 1733
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	4 cut(s)	304, 727, 955, 1756
MalI	GATC	9 cut(s)	132, 536, 1126, 1359, 1463, 1608, 1813, 1878, 2043
MboI	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
MflI	RGATCY	3 cut(s)	1606, 1811, 2041
MhlI	GDGCHC	4 cut(s)	269, 288, 451, 1770
MluCI	AATT	8 cut(s)	1156, 1367, 1444, 1468, 1493, 1641, 1954, 2013
MlyI	GAGTC	4 cut(s)	500, 943, 1410, 1553
MmeI	TCCRAC	1 cut(s)	1687
Mph1103I	ATGCAT	2 cut(s)	649, 1807
MroNI	GCCGGC	1 cut(s)	1481
MroXI	GAANNNNTTC	1 cut(s)	1370
MseI	TTAA	4 cut(s)	609, 1185, 1440, 2012
MslI	CAYNNNNRTG	4 cut(s)	582, 845, 1271, 1994
MspA1I	CMGCKG	2 cut(s)	72, 261
MspI	CCGG	8 cut(s)	52, 272, 445, 454, 824, 1244, 1482, 1738
MspR9I	CCNGG	5 cut(s)	52, 317, 446, 616, 1739
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	317, 616
MvnI	CGCG	2 cut(s)	72, 303
MwoI	GCNNNNNNNGC	4 cut(s)	78, 252, 292, 842
NaeI	GCCGGC	1 cut(s)	1483
NciI	CCSGG	3 cut(s)	52, 446, 1739
NdeII	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
NgoMIV	GCCGGC	1 cut(s)	1481
NlaIV	GGNNCC	7 cut(s)	56, 146, 147, 266, 267, 449, 1768
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	3 cut(s)	304, 727, 1756
NsiI	ATGCAT	2 cut(s)	649, 1807
NspI	RCATGY	2 cut(s)	1809, 1912
NspV	TTCGAA	1 cut(s)	1364
PagI	TCATGA	1 cut(s)	1404
PasI	CCCWGGG	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	546
PdiI	GCCGGC	1 cut(s)	1483
PdmI	GAANNNNTTC	1 cut(s)	1370
PfeI	GAWTC	3 cut(s)	529, 1261, 2078
PflFI	GACNNNGTC	2 cut(s)	317, 473
PfoI	TCCNGGA	2 cut(s)	50, 1737
PinAI	ACCGGT	1 cut(s)	453
PkrI	GCNGC	8 cut(s)	74, 77, 80, 302, 1096, 1672, 1731, 1860
PleI	GAGTC	4 cut(s)	499, 943, 1409, 1553
PpsI	GAGTC	4 cut(s)	499, 943, 1409, 1553
PpuMI	RGGWCCY	2 cut(s)	145, 328
PsiI	TTATAA	2 cut(s)	1206, 1976
Psp124BI	GAGCTC	1 cut(s)	288
Psp5II	RGGWCCY	2 cut(s)	145, 328
Psp6I	CCWGG	2 cut(s)	315, 614
PspFI	CCCAGC	2 cut(s)	120, 261
PspGI	CCWGG	2 cut(s)	315, 614
PspN4I	GGNNCC	7 cut(s)	56, 146, 147, 266, 267, 449, 1768
PspOMI	GGGCCC	3 cut(s)	265, 447, 1766
PspPPI	RGGWCCY	2 cut(s)	145, 328
PsuI	RGATCY	3 cut(s)	1606, 1811, 2041
PsyI	GACNNNGTC	2 cut(s)	317, 473
RsaI	GTAC	2 cut(s)	629, 1842
RsaNI	GTAC	2 cut(s)	628, 1841
RseI	CAYNNNNRTG	4 cut(s)	582, 845, 1271, 1994
SacI	GAGCTC	1 cut(s)	288
SacII	CCGCGG	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	4 cut(s)	609, 1185, 1440, 2012
SatI	GCNGC	8 cut(s)	73, 76, 79, 301, 1095, 1671, 1730, 1859
Sau3AI	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
SchI	GAGTC	4 cut(s)	500, 943, 1410, 1553
ScrFI	CCNGG	5 cut(s)	52, 317, 446, 616, 1739
SduI	GDGCHC	4 cut(s)	269, 288, 451, 1770
SexAI	ACCWGGT	1 cut(s)	315
SfaNI	GCATC	4 cut(s)	634, 922, 1708, 1845
Sfr303I	CCGCGG	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	1364
SgrBI	CCGCGG	1 cut(s)	73
SinI	GGWCC	3 cut(s)	145, 328, 337
SmiMI	CAYNNNNRTG	4 cut(s)	582, 845, 1271, 1994
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	8 cut(s)	1156, 1367, 1444, 1468, 1493, 1641, 1954, 2013
SspMI	CTAG	3 cut(s)	953, 1452, 1733
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	5 cut(s)	50, 315, 444, 614, 1737
TaaI	ACNGT	4 cut(s)	67, 522, 1258, 1795
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	3 cut(s)	129, 234, 1364
TasI	AATT	8 cut(s)	1156, 1367, 1444, 1468, 1493, 1641, 1954, 2013
TatI	WGTACW	2 cut(s)	627, 1840
TauI	GCSGC	3 cut(s)	75, 81, 303
TfiI	GAWTC	3 cut(s)	529, 1261, 2078
Tru1I	TTAA	4 cut(s)	609, 1185, 1440, 2012
Tru9I	TTAA	4 cut(s)	609, 1185, 1440, 2012
TscAI	CASTG	2 cut(s)	380, 1759
TseFI	GTSAC	3 cut(s)	304, 727, 1756
TseI	GCWGC	5 cut(s)	75, 1094, 1670, 1729, 1858
Tsp45I	GTSAC	3 cut(s)	304, 727, 1756
TspDTI	ATGAA	7 cut(s)	217, 608, 792, 1028, 1550, 1629, 2039
TspRI	CASTG	2 cut(s)	380, 1759
Tth111I	GACNNNGTC	2 cut(s)	317, 473
VpaK11BI	GGWCC	3 cut(s)	145, 328, 337
XapI	RAATTY	3 cut(s)	1367, 1493, 1954
XceI	RCATGY	2 cut(s)	1809, 1912
XmnI	GAANNNNTTC	1 cut(s)	1370
XspI	CTAG	3 cut(s)	953, 1452, 1733
Zsp2I	ATGCAT	2 cut(s)	649, 1807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.