Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007852

Physical Location & Seq

Genomic Coordinates Reverse (-)

62407322 .. 62409678

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGCCACCACCTCCCAAGTTCTCCTTATTCCACGGCCACCGCAACCCCTCCCGTAACCGCCCCACCGTCCGTGGCAGCCGCCTCTCTCCCCCTAAACCCAACCCCACCCCAACTCAATCCCAGCCCTTCGATCTCTCCAAGTGGGACCCCCACCAATCTCCGCCGTCCACCTCCTCCACCCCCAACCCCGCCGTCCCCTTCTCCTCCCTCTCCCCCATCGCCCGCTTCATCCTCGATGCCTTCCGCAAGAACCGCAACCACTGGGGCCCGCCGGTCGTCTCGGAGCTCCAGAAGCTCCGCCGCGTCACGCCCGACCTGGTCGCCGAGGTCCTCAAGGTCCAAAACGACCCCGTTTCGGCCTCCAAGCTCTTCCACTGGGCCGGTAAGCAAAAGGGTTTCAAGCACACCTTCGCTTCCTACAATGCCCTGACCTATTGCCTGAACCGGGCCCACCGGTTCAGGTCGGCCGACCAAGTCCCGGACTTGATGGAGTCTCAGGGCAAACCCCCAACCGAGAAACAGTTTGAGATTCTGATCAGAATGCACTCTGATGCCAATAGAGGTCTTAGGGTTTATCATGTCTATGAGAAGATGAAGAAGTTTGGGGTTAAACCCAGGGTTTATTTGTACAATAGGGTAATGGATGCATTGGTGAAAACAGGTCATTTGGATTTGGCATTGTCGGTTTACGATGATTTTCGGGGTGATGGGTTGGTGGAGGAGAGTGTGACTTTTATGATTTTGATAAAGGGGATGTGTAAGTTTGGGAGAGTTGATGAAATGTTGGGGCTTTTGGATAGAATGAGGGTGAGTTTGTGTAAGCCGGATGTGTTTGCTTACACCGCAATGATAAAGGTGATGGTTTCGGAGGGGGATTTGGATGGTTGTTTGAAGGTTTGGGAGGAAATGAGGAAGGATAGAGTTGAGGCGGATGCTATGGCGTATGTGACTCTGGTTACGGGGTTGTGTAAAGGAGGGAGGGTGGAGAAGGGGTATGAGTTGTTTAGGGAGATGAAGGAGAAGGGTTTTTTGATTGATAGAGCGATTTATGGGGTGCTGGTTGAGGGGTTTGTGGAAGACAGGAAGGTTGGGGCAGCGTGTGATTTGTTGAAGGATTTGGTGGGATCAGGGTATAGAGCAGATTTGGGGATATATAATTCTCTAATCAAGGGTTTATGTGATGTTAAGCGGGTGGATAAGGCTTATAAGCTTTTCCGAGTTGCAGTTCAAGAGGGTCTTGGGCCGGATTTTGCGACGGTGAGTCCCATTCTGGTGTCTTATGCTGAGATGAGAAGAATGGATGACTTTTGCGAGTTGCTTGCACAGATGGAGAAATGTGGTTGTCCTGTTATTGATGATCTTTCAAAATTCTTTTCCATTGTTGCTGAAAAGGAGGATGGAGTAATGATGGCTTTAGAAGTGTTTGAAGACTTGAAAGTTAAAAGCTATTCTAGTGTTGTGATCTACAATATCCTTATTGCTGGCCTCCACAAATTTGGGAAAGTGAAGAAAGCATTATCCCTCATTGATGAGATGAAGAGTTTTGATTTCCAGCCTGACTCGTCCACGTATAGCTCTGCGATTATGTGTTATATTGAAGAAGGGGATCTCCATGAAGCTTGTGCCTGTCATAATAAGATAATTGAGATGTCTTGCGTTCCTTCTATTGCTGCCTATTGCTCTCTTGCTAAAGGGCTTTTCAATGTTGGAGAGATTGATGCAGTAATGCTGCTAGTCCGGGACTGCTTAGCCAGTGTGACAAGTGGGCCCATGACATTCAAGTATTCTCTTACTGTTCTCCATGCATGTAGATCCAATAATGCTGAGAAGGTGATTGATGTACTGAATGAGATGATGCAGCAGGGCTGTCCACCAGATCATGTTATATACTCTGCTATAATCTCTGGCATGTGTAAGCATGGCACAATAGAGGAGGCAAGGAAGGTATTTTCAAATTTGAAAGAGCGCAAACTTATAACAGAAGCCAACACGATTGTGTATGATGATATATTAATTGAACACATGAAGAAGAAGACAGCAGATCTGGTTGAAATTATGAAGCCAGCATCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

692

Amino Acids

77.6

Weight (kDa)

8.43

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	119 - 274	7.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	242 - 286	4.5e-10	PPR repeat family
PPR_2	PF13041	275 - 324	2.5e-11	PPR repeat family
PPR_1	PF12854	308 - 339	6.5e-07	PPR repeat
PPR_2	PF13041	311 - 358	1.6e-07	PPR repeat family
PPR	PF01535	314 - 343	4e-07	PPR repeat
PPR_1	PF12854	377 - 406	1e-06	PPR repeat
PPR_2	PF13041	383 - 421	4.3e-06	PPR repeat family
PPR_2	PF13041	485 - 528	1.1e-11	PPR repeat family
PPR	PF01535	487 - 516	4.2e-06	PPR repeat
PPR_1	PF12854	622 - 651	5.5e-09	PPR repeat
PPR_2	PF13041	625 - 658	3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20740
fragaria_vesca	FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120
malus_domestica	MD02G1297100.v1.1 MD07G1026900.v1.1
prunus_persica	Prupe.2G027000_v2.0.a1 Prupe.2G027000_v2.0.a1
pyrus_communis	pycom02g25030 pycom07g02030 pycom07g02070
rosa_chinensis	RchiOBHm_Chr1g0319391
rosa_laevigata	RLG00000030490
rosa_multiflora	Rmu_sc0005870.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328510
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039500 Rh1BG036300 Rh1CG038400 Rh1DG031400
rosa_wichuraiana	Rw1G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1206, 1976
AccII	CGCG	1 cut(s)	303
AclWI	GGATC	3 cut(s)	1132, 1614, 1806
AcoI	YGGCCR	2 cut(s)	34, 465
AcsI	RAATTY	3 cut(s)	1367, 1493, 1954
AfaI	GTAC	2 cut(s)	629, 1842
AfiI	CCNNNNNNNGG	3 cut(s)	355, 445, 478
AgeI	ACCGGT	1 cut(s)	453
AhdI	GACNNNNNGTC	1 cut(s)	1260
AjnI	CCWGG	2 cut(s)	315, 614
AleI	CACNNNNGTG	1 cut(s)	1994
AluBI	AGCT	7 cut(s)	286, 295, 367, 1210, 1446, 1575, 1619
AluI	AGCT	7 cut(s)	286, 295, 367, 1210, 1446, 1575, 1619
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	283, 498
AlwI	GGATC	3 cut(s)	1132, 1614, 1806
AoxI	GGCC	9 cut(s)	34, 265, 357, 378, 447, 465, 1241, 1483, 1766
ApaI	GGGCCC	3 cut(s)	269, 451, 1770
ApeKI	GCWGC	5 cut(s)	75, 1094, 1670, 1729, 1858
ApoI	RAATTY	3 cut(s)	1367, 1493, 1954
AseI	ATTAAT	1 cut(s)	2012
AsiGI	ACCGGT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	1968
AsuC2I	CCSGG	3 cut(s)	446, 479, 1739
AsuHPI	GGTGA	6 cut(s)	664, 716, 820, 868, 1270, 1843
AvaII	GGWCC	3 cut(s)	145, 328, 337
BaeGI	GKGCMC	3 cut(s)	269, 451, 1770
BanII	GRGCYC	4 cut(s)	269, 288, 451, 1770
BbsI	GAAGAC	3 cut(s)	1083, 1434, 2039
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	5 cut(s)	87, 1106, 1657, 1716, 1870
BccI	CCATC	8 cut(s)	224, 481, 701, 853, 875, 1321, 1391, 1402
BceAI	ACGGC	3 cut(s)	49, 148, 176
BcgI	CGANNNNNNTGC	2 cut(s)	1301, 1335
BciT130I	CCWGG	2 cut(s)	317, 616
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	3 cut(s)	446, 479, 1739
BcoDI	GTCTC	2 cut(s)	283, 498
BfaI	CTAG	2 cut(s)	1452, 1733
BglII	AGATCT	1 cut(s)	2041
BisI	GCNGC	7 cut(s)	76, 79, 301, 1095, 1671, 1730, 1859
BlpI	GCTNAGC	1 cut(s)	1747
BlsI	GCNGC	7 cut(s)	77, 80, 302, 1096, 1672, 1731, 1860
Bme1390I	CCNGG	5 cut(s)	317, 446, 479, 616, 1739
Bme18I	GGWCC	3 cut(s)	145, 328, 337
BmeRI	GACNNNNNGTC	1 cut(s)	1260
BmiI	GGNNCC	6 cut(s)	146, 147, 266, 267, 449, 1768
BmrFI	CCNGG	5 cut(s)	317, 446, 479, 616, 1739
BmrI	ACTGGG	2 cut(s)	271, 385
BmsI	GCATC	6 cut(s)	226, 541, 634, 922, 1708, 1845
BmuI	ACTGGG	2 cut(s)	271, 385
BpiI	GAAGAC	3 cut(s)	1083, 1434, 2039
BpmI	CTGGAG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	1747
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	3 cut(s)	446, 479, 1739
BsaAI	YACGTR	1 cut(s)	1569
BsaBI	GATNNNNATC	1 cut(s)	533
BsaJI	CCNNGG	5 cut(s)	31, 70, 324, 614, 615
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	4 cut(s)	966, 977, 996, 1007
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 445, 478
Bse118I	RCCGGY	3 cut(s)	271, 380, 453
Bse1I	ACTGG	3 cut(s)	266, 380, 1752
Bse3DI	GCAATG	1 cut(s)	852
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	317, 616
BseDI	CCNNGG	5 cut(s)	31, 70, 324, 614, 615
BseGI	GGATG	8 cut(s)	228, 649, 759, 832, 886, 937, 1306, 1402
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	3 cut(s)	355, 445, 478
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	3 cut(s)	509, 1275, 1815
BseNI	ACTGG	3 cut(s)	266, 380, 1752
BseRI	GAGGAG	4 cut(s)	163, 193, 734, 1946
BseSI	GKGCMC	3 cut(s)	269, 451, 1770
BseX3I	CGGCCG	1 cut(s)	465
BseXI	GCAGC	5 cut(s)	87, 1106, 1657, 1716, 1870
BseYI	CCCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	303
Bsh1285I	CGRYCG	2 cut(s)	276, 468
BshFI	GGCC	9 cut(s)	36, 267, 359, 380, 449, 467, 1243, 1485, 1768
BshTI	ACCGGT	1 cut(s)	453
BsiEI	CGRYCG	2 cut(s)	276, 468
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	8 cut(s)	272, 381, 445, 454, 479, 824, 1244, 1738
BslFI	GGGAC	5 cut(s)	158, 179, 461, 1248, 1754
BslI	CCNNNNNNNGG	3 cut(s)	355, 445, 478
BsmAI	GTCTC	2 cut(s)	283, 498
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	5 cut(s)	158, 179, 461, 1248, 1754
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	9 cut(s)	36, 267, 359, 380, 449, 467, 1243, 1485, 1768
Bsp120I	GGGCCC	3 cut(s)	265, 447, 1766
Bsp1286I	GDGCHC	4 cut(s)	269, 288, 451, 1770
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
Bsp1720I	GCTNAGC	1 cut(s)	1747
BspANI	GGCC	9 cut(s)	36, 267, 359, 380, 449, 467, 1243, 1485, 1768
BspCNI	CTCAG	3 cut(s)	508, 1276, 1816
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	6 cut(s)	146, 147, 266, 267, 449, 1768
BspPI	GGATC	3 cut(s)	1132, 1614, 1806
BspQI	GCTCTTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	852
BsrFI	RCCGGY	3 cut(s)	271, 380, 453
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	3 cut(s)	266, 380, 1752
BssAI	RCCGGY	3 cut(s)	271, 380, 453
BssECI	CCNNGG	5 cut(s)	31, 70, 324, 614, 615
BssMI	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
Bst2UI	CCWGG	2 cut(s)	317, 616
Bst4CI	ACNGT	4 cut(s)	67, 522, 1258, 1795
Bst6I	CTCTTC	2 cut(s)	374, 1532
BstAUI	TGTACA	1 cut(s)	627
BstBAI	YACGTR	1 cut(s)	1569
BstC8I	GCNNGC	5 cut(s)	223, 269, 1320, 1483, 2064
BstDEI	CTNAG	5 cut(s)	495, 566, 1284, 1747, 1824
BstDSI	CCRYGG	2 cut(s)	31, 70
BstF5I	GGATG	8 cut(s)	228, 649, 759, 832, 886, 937, 1306, 1402
BstFNI	CGCG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	1968
BstKTI	GATC	9 cut(s)	133, 537, 1127, 1360, 1464, 1609, 1814, 1879, 2044
BstMAI	GTCTC	2 cut(s)	283, 498
BstMBI	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
BstMCI	CGRYCG	2 cut(s)	276, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 292, 842
BstNI	CCWGG	2 cut(s)	317, 616
BstNSI	RCATGY	2 cut(s)	1809, 1912
BstSCI	CCNGG	5 cut(s)	315, 444, 477, 614, 1737
BstSLI	GKGCMC	3 cut(s)	269, 451, 1770
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	5 cut(s)	87, 1106, 1657, 1716, 1870
BstV2I	GAAGAC	3 cut(s)	1083, 1434, 2039
BstX2I	RGATCY	3 cut(s)	1606, 1811, 2041
BstXI	CCANNNNNNTGG	1 cut(s)	1496
BstYI	RGATCY	3 cut(s)	1606, 1811, 2041
BstZI	CGGCCG	1 cut(s)	465
BsuRI	GGCC	9 cut(s)	36, 267, 359, 380, 449, 467, 1243, 1485, 1768
BtgI	CCRYGG	2 cut(s)	31, 70
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	8 cut(s)	228, 649, 759, 832, 886, 937, 1306, 1402
BtsIMutI	CAGTG	3 cut(s)	259, 373, 1759
Cac8I	GCNNGC	5 cut(s)	223, 269, 1320, 1483, 2064
CfoI	GCGC	1 cut(s)	1968
Cfr10I	RCCGGY	3 cut(s)	271, 380, 453
CseI	GACGC	1 cut(s)	292
CsiI	ACCWGGT	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	628, 1841
CspAI	ACCGGT	1 cut(s)	453
CviAII	CATG	9 cut(s)	578, 1613, 1771, 1802, 1806, 1880, 1909, 1919, 2023
CviQI	GTAC	2 cut(s)	628, 1841
DdeI	CTNAG	5 cut(s)	495, 566, 1284, 1747, 1824
DpnI	GATC	9 cut(s)	132, 536, 1126, 1359, 1463, 1608, 1813, 1878, 2043
DpnII	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
DriI	GACNNNNNGTC	1 cut(s)	1260
EaeI	YGGCCR	2 cut(s)	34, 465
EagI	CGGCCG	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	374, 1532
Eam1105I	GACNNNNNGTC	1 cut(s)	1260
EarI	CTCTTC	2 cut(s)	374, 1532
EciI	GGCGGA	3 cut(s)	150, 287, 944
Ecl136II	GAGCTC	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	465
Eco24I	GRGCYC	4 cut(s)	269, 288, 451, 1770
Eco47I	GGWCC	3 cut(s)	145, 328, 337
Eco52I	CGGCCG	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	3 cut(s)	145, 265, 328
EcoRII	CCWGG	2 cut(s)	315, 614
EcoT22I	ATGCAT	2 cut(s)	649, 1807
EcoT38I	GRGCYC	4 cut(s)	269, 288, 451, 1770
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	9 cut(s)	581, 1616, 1774, 1805, 1809, 1883, 1912, 1922, 2026
FalI	AAGNNNNNCTT	6 cut(s)	8, 40, 392, 424, 1221, 1253
FaqI	GGGAC	5 cut(s)	158, 179, 461, 1248, 1754
FatI	CATG	9 cut(s)	577, 1612, 1770, 1801, 1805, 1879, 1908, 1918, 2022
FauI	CCCGC	4 cut(s)	196, 230, 276, 1182
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	7 cut(s)	76, 79, 301, 1095, 1671, 1730, 1859
FokI	GGATG	8 cut(s)	215, 656, 766, 839, 893, 944, 1313, 1409
FriOI	GRGCYC	4 cut(s)	269, 288, 451, 1770
Fsp4HI	GCNGC	7 cut(s)	76, 79, 301, 1095, 1671, 1730, 1859
FspBI	CTAG	2 cut(s)	1452, 1733
GlaI	GCGC	1 cut(s)	1967
GluI	GCNGC	7 cut(s)	76, 79, 301, 1095, 1671, 1730, 1859
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	9 cut(s)	36, 267, 359, 380, 449, 467, 1243, 1485, 1768
HapII	CCGG	8 cut(s)	272, 381, 445, 454, 479, 824, 1244, 1738
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	1968
Hin1II	CATG	9 cut(s)	581, 1616, 1774, 1805, 1809, 1883, 1912, 1922, 2026
Hin6I	GCGC	1 cut(s)	1966
HinP1I	GCGC	1 cut(s)	1966
HindIII	AAGCTT	2 cut(s)	1208, 1617
HinfI	GANTC	5 cut(s)	491, 529, 949, 1261, 1559
HpaII	CCGG	8 cut(s)	272, 381, 445, 454, 479, 824, 1244, 1738
HphI	GGTGA	6 cut(s)	664, 716, 820, 868, 1270, 1843
Hpy166II	GTNNAC	4 cut(s)	168, 688, 1566, 1871
Hpy188I	TCNGA	6 cut(s)	283, 534, 539, 550, 868, 1217
Hpy188III	TCNNGA	2 cut(s)	289, 1229
Hpy8I	GTNNAC	4 cut(s)	168, 688, 1566, 1871
Hpy99I	CGWCG	1 cut(s)	1258
HpyCH4III	ACNGT	4 cut(s)	67, 522, 1258, 1795
HpyCH4IV	ACGT	1 cut(s)	1568
HpyCH4V	TGCA	7 cut(s)	544, 647, 1223, 1322, 1721, 1805, 1858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 292, 842
HpyF3I	CTNAG	5 cut(s)	495, 566, 1284, 1747, 1824
HpySE526I	ACGT	1 cut(s)	1568
Hsp92II	CATG	9 cut(s)	581, 1616, 1774, 1805, 1809, 1883, 1912, 1922, 2026
HspAI	GCGC	1 cut(s)	1966
KflI	GGGWCCC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
LguI	GCTCTTC	1 cut(s)	374
LmnI	GCTCC	3 cut(s)	283, 291, 300
Lsp1109I	GCAGC	5 cut(s)	87, 1106, 1657, 1716, 1870
LweI	GCATC	6 cut(s)	226, 541, 634, 922, 1708, 1845
MabI	ACCWGGT	1 cut(s)	315
MaeI	CTAG	2 cut(s)	1452, 1733
MaeII	ACGT	1 cut(s)	1568
MaeIII	GTNAC	6 cut(s)	53, 304, 727, 946, 955, 1756
MalI	GATC	9 cut(s)	132, 536, 1126, 1359, 1463, 1608, 1813, 1878, 2043
MboI	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
MflI	RGATCY	3 cut(s)	1606, 1811, 2041
MhlI	GDGCHC	4 cut(s)	269, 288, 451, 1770
MluCI	AATT	7 cut(s)	1156, 1367, 1493, 1641, 1954, 2013, 2052
MlyI	GAGTC	4 cut(s)	500, 943, 1270, 1553
MmeI	TCCRAC	1 cut(s)	1687
Mph1103I	ATGCAT	2 cut(s)	649, 1807
MseI	TTAA	4 cut(s)	609, 1185, 1440, 2012
MslI	CAYNNNNRTG	6 cut(s)	549, 582, 845, 1271, 1994, 2071
MspI	CCGG	8 cut(s)	272, 381, 445, 454, 479, 824, 1244, 1738
MspR9I	CCNGG	5 cut(s)	317, 446, 479, 616, 1739
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	317, 616
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	252, 292, 842
NciI	CCSGG	3 cut(s)	446, 479, 1739
NdeII	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
NlaIII	CATG	9 cut(s)	581, 1616, 1774, 1805, 1809, 1883, 1912, 1922, 2026
NlaIV	GGNNCC	6 cut(s)	146, 147, 266, 267, 449, 1768
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	4 cut(s)	304, 727, 946, 1756
NsiI	ATGCAT	2 cut(s)	649, 1807
NspI	RCATGY	2 cut(s)	1809, 1912
OliI	CACNNNNGTG	1 cut(s)	1994
PasI	CCCWGGG	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	529
PflFI	GACNNNGTC	2 cut(s)	317, 473
PfoI	TCCNGGA	2 cut(s)	477, 1737
PinAI	ACCGGT	1 cut(s)	453
PkrI	GCNGC	7 cut(s)	77, 80, 302, 1096, 1672, 1731, 1860
PleI	GAGTC	4 cut(s)	499, 943, 1269, 1553
PpsI	GAGTC	4 cut(s)	499, 943, 1269, 1553
Ppu21I	YACGTR	1 cut(s)	1569
PpuMI	RGGWCCY	2 cut(s)	145, 328
PshBI	ATTAAT	1 cut(s)	2012
PsiI	TTATAA	2 cut(s)	1206, 1976
Psp124BI	GAGCTC	1 cut(s)	288
Psp5II	RGGWCCY	2 cut(s)	145, 328
Psp6I	CCWGG	2 cut(s)	315, 614
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	2 cut(s)	315, 614
PspN4I	GGNNCC	6 cut(s)	146, 147, 266, 267, 449, 1768
PspOMI	GGGCCC	3 cut(s)	265, 447, 1766
PspPPI	RGGWCCY	2 cut(s)	145, 328
PsuI	RGATCY	3 cut(s)	1606, 1811, 2041
PsyI	GACNNNGTC	2 cut(s)	317, 473
RsaI	GTAC	2 cut(s)	629, 1842
RsaNI	GTAC	2 cut(s)	628, 1841
RseI	CAYNNNNRTG	6 cut(s)	549, 582, 845, 1271, 1994, 2071
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	4 cut(s)	609, 1185, 1440, 2012
SatI	GCNGC	7 cut(s)	76, 79, 301, 1095, 1671, 1730, 1859
Sau3AI	GATC	9 cut(s)	130, 534, 1124, 1357, 1461, 1606, 1811, 1876, 2041
SchI	GAGTC	4 cut(s)	500, 943, 1270, 1553
ScrFI	CCNGG	5 cut(s)	317, 446, 479, 616, 1739
SduI	GDGCHC	4 cut(s)	269, 288, 451, 1770
SexAI	ACCWGGT	1 cut(s)	315
SfaNI	GCATC	6 cut(s)	226, 541, 634, 922, 1708, 1845
SinI	GGWCC	3 cut(s)	145, 328, 337
SmiMI	CAYNNNNRTG	6 cut(s)	549, 582, 845, 1271, 1994, 2071
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	7 cut(s)	1156, 1367, 1493, 1641, 1954, 2013, 2052
SspMI	CTAG	2 cut(s)	1452, 1733
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	5 cut(s)	315, 444, 477, 614, 1737
TaaI	ACNGT	4 cut(s)	67, 522, 1258, 1795
TaiI	ACGT	1 cut(s)	1571
TaqI	TCGA	2 cut(s)	129, 234
TasI	AATT	7 cut(s)	1156, 1367, 1493, 1641, 1954, 2013, 2052
TatI	WGTACW	2 cut(s)	627, 1840
TauI	GCSGC	2 cut(s)	81, 303
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	4 cut(s)	609, 1185, 1440, 2012
Tru9I	TTAA	4 cut(s)	609, 1185, 1440, 2012
TscAI	CASTG	3 cut(s)	266, 380, 1759
TseFI	GTSAC	4 cut(s)	304, 727, 946, 1756
TseI	GCWGC	5 cut(s)	75, 1094, 1670, 1729, 1858
Tsp45I	GTSAC	4 cut(s)	304, 727, 946, 1756
TspDTI	ATGAA	8 cut(s)	217, 608, 792, 1028, 1550, 1629, 2039, 2072
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	3 cut(s)	266, 380, 1759
Tth111I	GACNNNGTC	2 cut(s)	317, 473
VpaK11BI	GGWCC	3 cut(s)	145, 328, 337
VspI	ATTAAT	1 cut(s)	2012
XapI	RAATTY	3 cut(s)	1367, 1493, 1954
XceI	RCATGY	2 cut(s)	1809, 1912
XspI	CTAG	2 cut(s)	1452, 1733
Zsp2I	ATGCAT	2 cut(s)	649, 1807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.