AT4G20910

Small RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002993
Physical Location & Seq
Reverse (-)
11185936 .. 11191123
5188 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G20910.2

Sequence Viewer

Length: 2829 bp
ATGGCCGGTGGTGGGAAGCATACTCCTACTCCAAAGGCGATTATACATCAGAAGTTTGGTGCTAAAGCAAGCTATACAGTTGAGGAAGTTCATGACTCTTCTCAGAGTGGTTGTCTAGGATTAGCAATTCCTCAAAAAGGTCCATGTCTCTATCGTTGCCACTTGCAGCTACCTGAATTTTCTGTTGTGTCAAATGTCTTCAAGAAGAAGAAGGATTCTGAACAATCTGCTGCTGAATTGGCTCTTGACAAGCTAGGCATTCGCCCTCAGAATGATGATCTTACTGTGGATGAAGCTAGGGATGAAATTGTTGGACGCATTAAGTATATATTTTCTGATGAGTTTCTTTCAGCTGAGCATCCTCTGGGAGCTCACCTTAGAGCGGCATTGCGAAGAGATGGTGAACGTTGTGGATCAGTTCCCGTTTCTGTCATTGCTACAGTTGATGCAAAGATTAACAGTCGTTGTAAAATTATCAATCCTTCTGTGGAGTCAGATCCTTTCTTGGCCATTTCCTATGTTATGAAGGCTGCTGCAAAGTTGGCAGACTACATTGTTGCATCTCCGCATGGACTCCGAAGGAAAAATGCATACCCTTCAGAAATCGTGGAAGCACTAGCTACTCATGTATCTGATTCCCTACATAGCAGAGAAGTCGCGGCTGTATATATACCATGTATCGATGAGGAAGTTGTTGAGTTAGATACTCTTTACATTTCATCAAACCGGCATTACTTGGATAGTATTGCTGAAAGGCTCGGATTGAAAGATGGCAACCAAGTGATGATATCCAGGATGTTTGGCAAAGCTTCCTGTGGCTCTGAGTGTAGATTGTACTCTGAGATTCCAAAGAAGTACTTGGATAATTCATCAGATGCCTCTGGTACTTCAAATGAAGACTCATCTCATATTGTAAAATCTCGGAATGCACGAGCAAGTTACATTTGTGGTCAAGATATTCACGGGGATGCAATCTTGGCATCTGTTGGTTACCGATGGAAGTCCGATGATCTTGACTATGATGATGTAACCGTAAATTCATTTTACAGAATATGTTGCGGTATGTCACCCAATGGAATCTACAAAATTTCCCGACAAGCTGTAATTGCTGCACAGTTGCCTTTTGCATTCACTACAAAATCTAATTGGAGAGGTCCACTCCCCAGGGAGATTCTCGGCCTGTTCTGCCACCAGCACCGACTAGCAGAACCCATCCTTTCTTCATCTACTGCACCTGTGAAATCGTTGTCCGACATATTCAGATCTCACAAGAAGTTGAAGGTCTCAGGAGTTGATGATGCCAATGAGAATTTGAGTAGGCAAAAAGAAGATACACCAGGACTAGGGCATGGGTTTAGATGTGAAGTGAAGATTTTTACAAAGTCTCAGGATTTAGTTTTAGAATGTTCACCGAGAAAATTCTATGAGAAGGAAAATGATGCCATTCAAAATGCTTCATTAAAGGCCCTCTTATGGTTTAGTAAGTTTTTTGCTGACCTGGATGTGGATGGAGAGCAATCATGTGATACAGATGACGACCAGGATACTAAATCTTCAAGTCCTAATGTTTTTGCGGCCCCACCGATTTTACAAAAGGAACACAGTTCTGAATCAAAAAACACAAATGTGCTGTCGGCAGAGAAGCGTGTTCAATCTATAACAAATGGTTCCGTGGTTAGCATATGCTATTCTTTGTCTTTGGCAGTGGATCCTGAATATTCGAGTGATGGTGAATCTCCAAGAGAAGACAATGAAAGCAATGAAGAGATGGAGTCTGAATATTCGGCTAATTGTGAATCCTCAGTAGAGCTCATTGAAAGCAATGAAGAGATAGAGTTTGAGGTAGGGACTGGATCCATGAATCCACATATTGAATCAGAAGTTACTCAGATGACTGTGGGTGAATATGCTTCATTTAGGATGACACCCCCTGATGCTGCTGAAGCTTTGATTTTGGCTGTTGGTTCTGATACTGTGAGAATCCGCTCGCTCCTATCAGAACGTCCATGTTTAAATTACAATATACTTTTGTTGGGAGTGAAAGGGCCATCAGAAGAACGAATGGAGGCGGCTTTTTTCAAACCTCCACTTTCAAAACAACGTGTTGAATATGCACTGAAACATATAAGAGAATCATCCGCTTCTACTTTGGTTGACTTTGGATGCGGATCTGGAAGTTTATTAGACTCTCTACTTGACTATCCAACTTCACTTCAAACCATCATCGGTGTTGACATTTCGCCAAAGGGTCTTGCCCGTGCTGCTAAGATGCTACATGTAAAACTAAACAAGGAAGCTTGCAACGTCAAATCTGCTACACTTTATGATGGTTCCATCCTTGAGTTTGACTCCAGGCTGCATGACGTTGACATCGGCACTTGCTTAGAGGTTATTGAACACATGGAAGAAGATCAAGCCTGTGAATTTGGGGAAAAAGTTCTGAGCTTGTTCCACCCCAAGCTCCTGATTGTCTCAACACCAAACTACGAGTTCAACACAATTCTCCAGCGGTCTACACCAGAAACCCAAGAAGAAAACAACTCGGAGCCACAGCTTCCAAAGTTCAGGAACCATGACCACAAATTCGAGTGGACAAGAGAACAGTTCAATCAATGGGCATCAAAGCTCGGCAAACGCCATAACTACAGCGTCGAGTTTAGCGGTGTTGGTGGGTCTGGTGAAGTAGAACCCGGATTTGCTTCTCAGATAGCTATTTTTAGACGGGAAGCTTCATCTGTTGAGAATGTTGCAGAAAGCTCAATGCAGCCTTATAAAGTCATCTGGGAGTGGAAGAAAGAAGATGTAGAAAAGAAAAAGACTGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001510 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0009451 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009653 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010093 GO:0010305 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016740 GO:0016741 GO:0019222 GO:0022414 GO:0031047 GO:0031050 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035279 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048519 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0098542 GO:0098586 GO:0098795 GO:0099402 GO:0140098 GO:1901360 GO:1901698 GO:1901699 GO:1905392 GO:1905393 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C Methyltransf_11 Methyltransf_12 Methyltransf_31 dsrm

Protein Analysis

942

Amino Acids

104.45

Weight (kDa)

5.29

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSRM_2 PF24995 16 - 86 1.6e-21 dsRNA binding domain
Hen1_LCD PF21224 98 - 199 1.2e-47 Small RNA 2'-O-methyltransferase-like, La-motif-containing domain
Hen1_Lam_C PF18441 218 - 355 9.9e-60 Hen1 La-motif C-terminal domain
dsRBD2 PF17842 357 - 497 2.5e-58 Double-stranded RNA binding domain 2
Methyltransf_31 PF13847 712 - 847 1.1e-07 Methyltransferase domain
Methyltransf_12 PF08242 718 - 804 6.3e-07 Methyltransferase domain
Methyltransf_25 PF13649 718 - 813 6.1e-06 Methyltransferase domain
Methyltransf_11 PF08241 718 - 805 9.6e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2772
AccBSI CCGCTC 2 cut(s) 383, 1986
AccI GTMKAC 1 cut(s) 2513
AccII CGCG 1 cut(s) 659
AclI AACGTT 1 cut(s) 406
AclWI GGATC 7 cut(s) 421, 491, 1703, 1716, 1848, 1861, 2176
AcoI YGGCCR 2 cut(s) 3, 507
AcsI RAATTY 7 cut(s) 176, 1036, 1086, 1309, 1418, 2423, 2582
AcuI CTGAAG 2 cut(s) 582, 1962
AfaI GTAC 3 cut(s) 836, 857, 886
AfiI CCNNNNNNNGG 6 cut(s) 12, 137, 382, 1343, 1473, 1504
AflIII ACRYGT 2 cut(s) 2101, 2275
AjnI CCWGG 6 cut(s) 791, 1163, 1336, 1497, 1539, 2351
AleI CACNNNNGTG 1 cut(s) 1625
Alw21I GWGCWC 2 cut(s) 373, 1812
Alw26I GTCTC 4 cut(s) 152, 1288, 1389, 2476
AlwI GGATC 7 cut(s) 421, 491, 1703, 1716, 1848, 1861, 2176
AoxI GGCC 6 cut(s) 3, 507, 1177, 1464, 1575, 2045
ApeKI GCWGC 9 cut(s) 166, 230, 530, 533, 1109, 1937, 2261, 2356, 2764
ApoI RAATTY 7 cut(s) 176, 1036, 1086, 1309, 1418, 2423, 2582
ArsI GACNNNNNNTTYG 4 cut(s) 1616, 1648, 2567, 2599
Asp700I GAANNNNTTC 1 cut(s) 2436
AspS9I GGNCC 5 cut(s) 140, 1154, 1465, 1576, 2045
AsuC2I CCSGG 1 cut(s) 2691
AsuHPI GGTGA 7 cut(s) 365, 413, 1059, 1401, 1742, 1913, 2690
AvaII GGWCC 2 cut(s) 140, 1154
BaeI ACNNNNGTAYC 2 cut(s) 612, 645
BalI TGGCCA 1 cut(s) 509
BamHI GGATCC 2 cut(s) 1708, 1853
BanII GRGCYC 2 cut(s) 373, 1812
BauI CACGAG 1 cut(s) 930
BbsI GAAGAC 3 cut(s) 190, 903, 1752
Bbv12I GWGCWC 2 cut(s) 373, 1812
BbvI GCAGC 9 cut(s) 178, 217, 517, 520, 1096, 1924, 2248, 2343, 2776
BcgI CGANNNNNNTGC 2 cut(s) 637, 671
BciT130I CCWGG 6 cut(s) 793, 1165, 1338, 1499, 1541, 2353
BciVI GTATCC 1 cut(s) 1537
BcnI CCSGG 1 cut(s) 2691
BcoDI GTCTC 4 cut(s) 152, 1288, 1389, 2476
BfaI CTAG 6 cut(s) 116, 254, 297, 617, 1202, 1343
BfmI CTRYAG 2 cut(s) 438, 2644
BfuI GTATCC 1 cut(s) 1537
BglII AGATCT 1 cut(s) 1262
BlpI GCTNAGC 1 cut(s) 354
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 7 cut(s) 793, 1165, 1338, 1499, 1541, 2353, 2691
Bme18I GGWCC 2 cut(s) 140, 1154
BmgT120I GGNCC 5 cut(s) 140, 1154, 1465, 1576, 2045
BmiI GGNNCC 7 cut(s) 1578, 1669, 1710, 1855, 2332, 2547, 2570
BmrFI CCNGG 7 cut(s) 793, 1165, 1338, 1499, 1541, 2353, 2691
BpiI GAAGAC 3 cut(s) 190, 903, 1752
BplI GAGNNNNNCTC 4 cut(s) 1143, 1175, 2333, 2365
BpmI CTGGAG 2 cut(s) 2335, 2489
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 2360
BpuMI CCSGG 1 cut(s) 2691
Bsa29I ATCGAT 1 cut(s) 681
BsaBI GATNNNNATC 1 cut(s) 2167
BsaI GGTCTC 1 cut(s) 1288
BsaJI CCNNGG 3 cut(s) 1163, 1164, 1671
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 137, 382, 1343, 1473, 1504
Bse118I RCCGGY 2 cut(s) 5, 726
Bse1I ACTGG 1 cut(s) 1855
Bse3DI GCAATG 4 cut(s) 386, 432, 1765, 1828
Bse8I GATNNNNATC 1 cut(s) 2167
BseBI CCWGG 6 cut(s) 793, 1165, 1338, 1499, 1541, 2353
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 3 cut(s) 1163, 1164, 1671
BseJI GATNNNNATC 1 cut(s) 2167
BseLI CCNNNNNNNGG 6 cut(s) 12, 137, 382, 1343, 1473, 1504
BseMI GCAATG 4 cut(s) 386, 432, 1765, 1828
BseNI ACTGG 1 cut(s) 1855
BseXI GCAGC 9 cut(s) 178, 217, 517, 520, 1096, 1924, 2248, 2343, 2776
BsgI GTGCAG 2 cut(s) 1095, 1215
Bsh1236I CGCG 1 cut(s) 659
BshFI GGCC 6 cut(s) 5, 509, 1179, 1466, 1577, 2047
BshVI ATCGAT 1 cut(s) 681
BsiHKAI GWGCWC 2 cut(s) 373, 1812
BsiSI CCGG 3 cut(s) 6, 727, 2691
BslFI GGGAC 1 cut(s) 1861
BslI CCNNNNNNNGG 6 cut(s) 12, 137, 382, 1343, 1473, 1504
BsmAI GTCTC 4 cut(s) 152, 1288, 1389, 2476
BsmFI GGGAC 1 cut(s) 1861
BsmI GAATGC 3 cut(s) 258, 931, 1127
BsnI GGCC 6 cut(s) 5, 509, 1179, 1466, 1577, 2047
Bso31I GGTCTC 1 cut(s) 1288
Bsp1286I GDGCHC 2 cut(s) 373, 1812
Bsp1720I GCTNAGC 1 cut(s) 354
BspANI GGCC 6 cut(s) 5, 509, 1179, 1466, 1577, 2047
BspDI ATCGAT 1 cut(s) 681
BspFNI CGCG 1 cut(s) 659
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 7 cut(s) 1578, 1669, 1710, 1855, 2332, 2547, 2570
BspPI GGATC 7 cut(s) 421, 491, 1703, 1716, 1848, 1861, 2176
BspTNI GGTCTC 1 cut(s) 1288
BsrBI CCGCTC 2 cut(s) 383, 1986
BsrDI GCAATG 4 cut(s) 386, 432, 1765, 1828
BsrFI RCCGGY 2 cut(s) 5, 726
BsrI ACTGG 1 cut(s) 1855
BssAI RCCGGY 2 cut(s) 5, 726
BssECI CCNNGG 3 cut(s) 1163, 1164, 1671
BssSI CACGAG 1 cut(s) 930
Bst2BI CACGAG 1 cut(s) 930
Bst2UI CCWGG 6 cut(s) 793, 1165, 1338, 1499, 1541, 2353
Bst6I CTCTTC 4 cut(s) 103, 388, 1758, 1821
BstC8I GCNNGC 3 cut(s) 70, 1988, 2299
BstDSI CCRYGG 1 cut(s) 1671
BstEII GGTNACC 1 cut(s) 989
BstENI CCTNNNNNAGG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 659
BstMAI GTCTC 4 cut(s) 152, 1288, 1389, 2476
BstMWI GCNNNNNNNGC 7 cut(s) 239, 542, 977, 1106, 1185, 1943, 2261
BstNI CCWGG 6 cut(s) 793, 1165, 1338, 1499, 1541, 2353
BstNSI RCATGY 1 cut(s) 2279
BstPI GGTNACC 1 cut(s) 989
BstSCI CCNGG 7 cut(s) 791, 1163, 1336, 1497, 1539, 2351, 2689
BstSFI CTRYAG 2 cut(s) 438, 2644
BstUI CGCG 1 cut(s) 659
BstV1I GCAGC 9 cut(s) 178, 217, 517, 520, 1096, 1924, 2248, 2343, 2776
BstV2I GAAGAC 3 cut(s) 190, 903, 1752
BstX2I RGATCY 5 cut(s) 496, 1262, 1708, 1853, 2168
BstYI RGATCY 5 cut(s) 496, 1262, 1708, 1853, 2168
Bsu15I ATCGAT 1 cut(s) 681
BsuI GTATCC 1 cut(s) 1537
BsuRI GGCC 6 cut(s) 5, 509, 1179, 1466, 1577, 2047
BsuTUI ATCGAT 1 cut(s) 681
BtgI CCRYGG 1 cut(s) 1671
BtsI GCAGTG 1 cut(s) 1710
BtsIMutI CAGTG 2 cut(s) 1710, 2114
Cac8I GCNNGC 3 cut(s) 70, 1988, 2299
CciI TCATGA 1 cut(s) 91
Cfr10I RCCGGY 2 cut(s) 5, 726
Cfr13I GGNCC 5 cut(s) 140, 1154, 1465, 1576, 2045
ClaI ATCGAT 1 cut(s) 681
CseI GACGC 2 cut(s) 324, 2638
Csp6I GTAC 3 cut(s) 835, 856, 885
CviQI GTAC 3 cut(s) 835, 856, 885
DraI TTTAAA 1 cut(s) 2013
EaeI YGGCCR 2 cut(s) 3, 507
Eam1104I CTCTTC 4 cut(s) 103, 388, 1758, 1821
EarI CTCTTC 4 cut(s) 103, 388, 1758, 1821
Ecl136II GAGCTC 2 cut(s) 371, 1810
Eco24I GRGCYC 2 cut(s) 373, 1812
Eco31I GGTCTC 1 cut(s) 1288
Eco32I GATATC 1 cut(s) 789
Eco47I GGWCC 2 cut(s) 140, 1154
Eco53kI GAGCTC 2 cut(s) 371, 1810
Eco57I CTGAAG 2 cut(s) 582, 1962
Eco91I GGTNACC 1 cut(s) 989
EcoICRI GAGCTC 2 cut(s) 371, 1810
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 1465
EcoO65I GGTNACC 1 cut(s) 989
EcoRII CCWGG 6 cut(s) 791, 1163, 1336, 1497, 1539, 2351
EcoRV GATATC 1 cut(s) 789
EcoT22I ATGCAT 1 cut(s) 592
EcoT38I GRGCYC 2 cut(s) 373, 1812
FalI AAGNNNNNCTT 4 cut(s) 842, 874, 1454, 1486
FaqI GGGAC 1 cut(s) 1861
FauNDI CATATG 1 cut(s) 1682
FblI GTMKAC 1 cut(s) 2513
FriOI GRGCYC 2 cut(s) 373, 1812
FspBI CTAG 6 cut(s) 116, 254, 297, 617, 1202, 1343
GsuI CTGGAG 2 cut(s) 2335, 2489
HaeIII GGCC 6 cut(s) 5, 509, 1179, 1466, 1577, 2047
HapII CCGG 3 cut(s) 6, 727, 2691
HgaI GACGC 2 cut(s) 324, 2638
HincII GTYRAC 3 cut(s) 2155, 2233, 2368
HindII GTYRAC 3 cut(s) 2155, 2233, 2368
HindIII AAGCTT 4 cut(s) 807, 1944, 2295, 2727
HpaII CCGG 3 cut(s) 6, 727, 2691
HphI GGTGA 7 cut(s) 365, 413, 1059, 1401, 1742, 1913, 2690
Hpy166II GTNNAC 8 cut(s) 404, 1157, 1409, 2155, 2233, 2368, 2514, 2592
Hpy8I GTNNAC 8 cut(s) 404, 1157, 1409, 2155, 2233, 2368, 2514, 2592
Hpy99I CGWCG 1 cut(s) 2654
HpyAV CCTTC 7 cut(s) 205, 492, 520, 573, 606, 1273, 1423
HpyCH4IV ACGT 5 cut(s) 406, 2002, 2101, 2304, 2364
HpyF10VI GCNNNNNNNGC 7 cut(s) 239, 542, 977, 1106, 1185, 1943, 2261
HpySE526I ACGT 5 cut(s) 406, 2002, 2101, 2304, 2364
LmnI GCTCC 4 cut(s) 368, 1995, 2466, 2545
Lsp1109I GCAGC 9 cut(s) 178, 217, 517, 520, 1096, 1924, 2248, 2343, 2776
MaeI CTAG 6 cut(s) 116, 254, 297, 617, 1202, 1343
MaeII ACGT 5 cut(s) 406, 2002, 2101, 2304, 2364
MaeIII GTNAC 5 cut(s) 938, 989, 1027, 1065, 1882
MbiI CCGCTC 2 cut(s) 383, 1986
MflI RGATCY 5 cut(s) 496, 1262, 1708, 1853, 2168
MhlI GDGCHC 2 cut(s) 373, 1812
MlsI TGGCCA 1 cut(s) 509
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 7 cut(s) 89, 500, 567, 893, 1781, 2180, 2342
MmeI TCCRAC 3 cut(s) 292, 1275, 2228
Mox20I TGGCCA 1 cut(s) 509
Mph1103I ATGCAT 1 cut(s) 592
MroXI GAANNNNTTC 1 cut(s) 2436
MscI TGGCCA 1 cut(s) 509
MseI TTAA 4 cut(s) 321, 456, 1460, 2012
MslI CAYNNNNRTG 2 cut(s) 966, 1625
Msp20I TGGCCA 1 cut(s) 509
MspA1I CMGCKG 2 cut(s) 353, 2509
MspI CCGG 3 cut(s) 6, 727, 2691
MspR9I CCNGG 7 cut(s) 793, 1165, 1338, 1499, 1541, 2353, 2691
Mva1269I GAATGC 3 cut(s) 258, 931, 1127
MvaI CCWGG 6 cut(s) 793, 1165, 1338, 1499, 1541, 2353
MvnI CGCG 1 cut(s) 659
MwoI GCNNNNNNNGC 7 cut(s) 239, 542, 977, 1106, 1185, 1943, 2261
NciI CCSGG 1 cut(s) 2691
NdeI CATATG 1 cut(s) 1682
NlaIV GGNNCC 7 cut(s) 1578, 1669, 1710, 1855, 2332, 2547, 2570
NmeAIII GCCGAG 2 cut(s) 1155, 2607
NmuCI GTSAC 1 cut(s) 1065
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 1 cut(s) 2279
OliI CACNNNNGTG 1 cut(s) 1625
PagI TCATGA 1 cut(s) 91
PasI CCCWGGG 1 cut(s) 1164
PciI ACATGT 1 cut(s) 2275
PcsI WCGNNNNNNNCGW 1 cut(s) 928
PctI GAATGC 3 cut(s) 258, 931, 1127
PdmI GAANNNNTTC 1 cut(s) 2436
PfoI TCCNGGA 1 cut(s) 791
PleI GAGTC 7 cut(s) 89, 499, 567, 893, 1780, 2180, 2342
PpsI GAGTC 7 cut(s) 89, 499, 567, 893, 1780, 2180, 2342
PscI ACATGT 1 cut(s) 2275
PsiI TTATAA 1 cut(s) 2772
Psp124BI GAGCTC 2 cut(s) 373, 1812
Psp1406I AACGTT 1 cut(s) 406
Psp6I CCWGG 6 cut(s) 791, 1163, 1336, 1497, 1539, 2351
PspEI GGTNACC 1 cut(s) 989
PspGI CCWGG 6 cut(s) 791, 1163, 1336, 1497, 1539, 2351
PspN4I GGNNCC 7 cut(s) 1578, 1669, 1710, 1855, 2332, 2547, 2570
PspPI GGNCC 5 cut(s) 140, 1154, 1465, 1576, 2045
PsuI RGATCY 5 cut(s) 496, 1262, 1708, 1853, 2168
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 3 cut(s) 836, 857, 886
RsaNI GTAC 3 cut(s) 835, 856, 885
RseI CAYNNNNRTG 2 cut(s) 966, 1625
SacI GAGCTC 2 cut(s) 373, 1812
SaqAI TTAA 4 cut(s) 321, 456, 1460, 2012
Sau96I GGNCC 5 cut(s) 140, 1154, 1465, 1576, 2045
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 7 cut(s) 89, 500, 567, 893, 1781, 2180, 2342
ScrFI CCNGG 7 cut(s) 793, 1165, 1338, 1499, 1541, 2353, 2691
SduI GDGCHC 2 cut(s) 373, 1812
SfcI CTRYAG 2 cut(s) 438, 2644
SinI GGWCC 2 cut(s) 140, 1154
SmiMI CAYNNNNRTG 2 cut(s) 966, 1625
SmlI CTYRAG 1 cut(s) 2339
SmoI CTYRAG 1 cut(s) 2339
SspI AATATT 2 cut(s) 1718, 1781
SspMI CTAG 6 cut(s) 116, 254, 297, 617, 1202, 1343
SstI GAGCTC 2 cut(s) 373, 1812
StyD4I CCNGG 7 cut(s) 791, 1163, 1336, 1497, 1539, 2351, 2689
TaiI ACGT 5 cut(s) 409, 2005, 2104, 2307, 2367
TaqI TCGA 4 cut(s) 681, 1721, 2586, 2652
TatI WGTACW 2 cut(s) 834, 855
TauI GCSGC 4 cut(s) 386, 662, 1577, 2072
Tru1I TTAA 4 cut(s) 321, 456, 1460, 2012
Tru9I TTAA 4 cut(s) 321, 456, 1460, 2012
TscAI CASTG 2 cut(s) 1710, 2121
TseFI GTSAC 1 cut(s) 1065
TseI GCWGC 9 cut(s) 166, 230, 530, 533, 1109, 1937, 2261, 2356, 2764
Tsp45I GTSAC 1 cut(s) 1065
TspGWI ACGGA 1 cut(s) 1660
TspRI CASTG 2 cut(s) 1710, 2121
VpaK11BI GGWCC 2 cut(s) 140, 1154
XagI CCTNNNNNAGG 1 cut(s) 135
XapI RAATTY 7 cut(s) 176, 1036, 1086, 1309, 1418, 2423, 2582
XceI RCATGY 1 cut(s) 2279
XmiI GTMKAC 1 cut(s) 2513
XmnI GAANNNNTTC 1 cut(s) 2436
XspI CTAG 6 cut(s) 116, 254, 297, 617, 1202, 1343
ZrmI AGTACT 1 cut(s) 857
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.