Small RNA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20910 AT4G20910 AT4G20920 AT4G20920 AT4G20920 AT4G20920 AT4G20920 |
| fragaria_vesca | FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 |
| malus_domestica | MD05G1271600.v1.1 MD10G1252200.v1.1 |
| prunus_persica | Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 |
| pyrus_communis | pycom05g25390 |
| rosa_chinensis | RchiOBHm_Chr5g0016471 |
| rosa_laevigata | RLG00000032251 |
| rosa_multiflora | Rmu_sc0001235.1_g000026 Rmu_sc0025842.1_g000001 Rmu_sc0030879.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00060430 |
| rosa_rugosa | Rorug05G0032500 Rorug05G0032500 |
| rosa_samantha | Rh5AG126200 Rh5BG125100 Rh5CG137500 Rh5DG125000 |
| rosa_wichuraiana | Rw5G010940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1689 |
| Acc36I | ACCTGC | 1 cut(s) | 2072 |
| AccB1I | GGYRCC | 2 cut(s) | 14, 80 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1811 |
| AccI | GTMKAC | 1 cut(s) | 2591 |
| AciI | CCGC | 3 cut(s) | 383, 1169, 2095 |
| AclWI | GGATC | 6 cut(s) | 433, 494, 985, 1565, 1578, 2767 |
| AcoI | YGGCCR | 1 cut(s) | 2715 |
| AcsI | RAATTY | 2 cut(s) | 216, 1637 |
| AcuI | CTGAAG | 5 cut(s) | 30, 924, 1875, 2340, 2853 |
| AdeI | CACNNNGTG | 1 cut(s) | 1133 |
| AfaI | GTAC | 4 cut(s) | 181, 1240, 1944, 2078 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 389, 1811 |
| AjnI | CCWGG | 4 cut(s) | 136, 807, 2271, 2773 |
| Alw21I | GWGCWC | 3 cut(s) | 597, 2478, 2689 |
| Alw26I | GTCTC | 5 cut(s) | 337, 688, 884, 1751, 2554 |
| AlwI | GGATC | 6 cut(s) | 433, 494, 985, 1565, 1578, 2767 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2423 |
| Ama87I | CYCGRG | 2 cut(s) | 336, 1998 |
| AoxI | GGCC | 7 cut(s) | 160, 261, 421, 866, 1612, 2130, 2715 |
| ApoI | RAATTY | 2 cut(s) | 216, 1637 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1610, 1642, 1883, 1915, 2654, 2686 |
| AspS9I | GGNCC | 3 cut(s) | 161, 1519, 1815 |
| AsuHPI | GGTGA | 6 cut(s) | 678, 1037, 1351, 1476, 1861, 2777 |
| AsuII | TTCGAA | 1 cut(s) | 34 |
| AvaI | CYCGRG | 2 cut(s) | 336, 1998 |
| AvaII | GGWCC | 2 cut(s) | 1519, 1815 |
| AxyI | CCTNAGG | 2 cut(s) | 54, 504 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 192, 225 |
| BalI | TGGCCA | 1 cut(s) | 2717 |
| BamHI | GGATCC | 1 cut(s) | 1570 |
| BanI | GGYRCC | 2 cut(s) | 14, 80 |
| BanII | GRGCYC | 1 cut(s) | 597 |
| BauI | CACGAG | 1 cut(s) | 2316 |
| Bbv12I | GWGCWC | 3 cut(s) | 597, 2478, 2689 |
| BccI | CCATC | 5 cut(s) | 317, 697, 1604, 1813, 2399 |
| BceAI | ACGGC | 1 cut(s) | 408 |
| BciT130I | CCWGG | 4 cut(s) | 138, 809, 2273, 2775 |
| BcoDI | GTCTC | 5 cut(s) | 337, 688, 884, 1751, 2554 |
| BfaI | CTAG | 3 cut(s) | 579, 755, 1295 |
| BfmI | CTRYAG | 4 cut(s) | 870, 2016, 2731, 2816 |
| BfuAI | ACCTGC | 1 cut(s) | 2072 |
| BglII | AGATCT | 1 cut(s) | 943 |
| BlpI | GCTNAGC | 1 cut(s) | 240 |
| BmcAI | AGTACT | 1 cut(s) | 1944 |
| Bme1390I | CCNGG | 4 cut(s) | 138, 809, 2273, 2775 |
| Bme18I | GGWCC | 2 cut(s) | 1519, 1815 |
| BmeT110I | CYCGRG | 2 cut(s) | 336, 1998 |
| BmgT120I | GGNCC | 3 cut(s) | 161, 1519, 1815 |
| BmiI | GGNNCC | 4 cut(s) | 16, 82, 1572, 1816 |
| BmrFI | CCNGG | 4 cut(s) | 138, 809, 2273, 2775 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 765, 797, 2299, 2331 |
| BpmI | CTGGAG | 3 cut(s) | 1440, 1935, 2567 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 240 |
| Bpu14I | TTCGAA | 1 cut(s) | 34 |
| BpuEI | CTTGAG | 1 cut(s) | 847 |
| BsaI | GGTCTC | 1 cut(s) | 1751 |
| BsaJI | CCNNGG | 3 cut(s) | 1223, 2109, 2271 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 598, 628 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 389, 1811 |
| Bse1I | ACTGG | 4 cut(s) | 1399, 1881, 2718, 2890 |
| Bse21I | CCTNAGG | 2 cut(s) | 54, 504 |
| Bse3DI | GCAATG | 1 cut(s) | 2515 |
| BseBI | CCWGG | 4 cut(s) | 138, 809, 2273, 2775 |
| BseDI | CCNNGG | 3 cut(s) | 1223, 2109, 2271 |
| BseGI | GGATG | 8 cut(s) | 137, 241, 328, 379, 817, 1116, 2043, 2228 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 389, 1811 |
| BseMI | GCAATG | 1 cut(s) | 2515 |
| BseMII | CTCAG | 7 cut(s) | 231, 377, 879, 1164, 1280, 2510, 2856 |
| BseNI | ACTGG | 4 cut(s) | 1399, 1881, 2718, 2890 |
| BseRI | GAGGAG | 2 cut(s) | 292, 1303 |
| BseYI | CCCAGC | 1 cut(s) | 2700 |
| BsgI | GTGCAG | 2 cut(s) | 884, 2340 |
| BshFI | GGCC | 7 cut(s) | 162, 263, 423, 868, 1614, 2132, 2717 |
| BshNI | GGYRCC | 2 cut(s) | 14, 80 |
| BsiHKAI | GWGCWC | 3 cut(s) | 597, 2478, 2689 |
| BsiHKCI | CYCGRG | 2 cut(s) | 336, 1998 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 389, 1811 |
| BsmAI | GTCTC | 5 cut(s) | 337, 688, 884, 1751, 2554 |
| BsmI | GAATGC | 2 cut(s) | 991, 1484 |
| BsnI | GGCC | 7 cut(s) | 162, 263, 423, 868, 1614, 2132, 2717 |
| Bso31I | GGTCTC | 1 cut(s) | 1751 |
| BsoBI | CYCGRG | 2 cut(s) | 336, 1998 |
| Bsp119I | TTCGAA | 1 cut(s) | 34 |
| Bsp1286I | GDGCHC | 3 cut(s) | 597, 2478, 2689 |
| Bsp1407I | TGTACA | 1 cut(s) | 1238 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 240 |
| BspACI | CCGC | 3 cut(s) | 383, 1169, 2095 |
| BspANI | GGCC | 7 cut(s) | 162, 263, 423, 868, 1614, 2132, 2717 |
| BspCNI | CTCAG | 7 cut(s) | 232, 378, 880, 1165, 1279, 2511, 2855 |
| BspLI | GGNNCC | 4 cut(s) | 16, 82, 1572, 1816 |
| BspMAI | CTGCAG | 1 cut(s) | 2020 |
| BspMI | ACCTGC | 1 cut(s) | 2072 |
| BspPI | GGATC | 6 cut(s) | 433, 494, 985, 1565, 1578, 2767 |
| BspQI | GCTCTTC | 1 cut(s) | 264 |
| BspT104I | TTCGAA | 1 cut(s) | 34 |
| BspT107I | GGYRCC | 2 cut(s) | 14, 80 |
| BspTNI | GGTCTC | 1 cut(s) | 1751 |
| BsrDI | GCAATG | 1 cut(s) | 2515 |
| BsrGI | TGTACA | 1 cut(s) | 1238 |
| BsrI | ACTGG | 4 cut(s) | 1399, 1881, 2718, 2890 |
| BssECI | CCNNGG | 3 cut(s) | 1223, 2109, 2271 |
| BssSI | CACGAG | 1 cut(s) | 2316 |
| BssT1I | CCWWGG | 2 cut(s) | 1223, 2109 |
| Bst2BI | CACGAG | 1 cut(s) | 2316 |
| Bst2UI | CCWGG | 4 cut(s) | 138, 809, 2273, 2775 |
| Bst4CI | ACNGT | 6 cut(s) | 31, 205, 747, 1411, 2691, 2735 |
| Bst6I | CTCTTC | 5 cut(s) | 264, 312, 354, 381, 1677 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1166 |
| BstAUI | TGTACA | 1 cut(s) | 1238 |
| BstBI | TTCGAA | 1 cut(s) | 34 |
| BstC8I | GCNNGC | 4 cut(s) | 91, 246, 433, 2130 |
| BstF5I | GGATG | 8 cut(s) | 137, 241, 328, 379, 817, 1116, 2043, 2228 |
| BstMAI | GTCTC | 5 cut(s) | 337, 688, 884, 1751, 2554 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 174, 245, 260, 1037, 1166, 1267, 1397, 1916 |
| BstNI | CCWGG | 4 cut(s) | 138, 809, 2273, 2775 |
| BstNSI | RCATGY | 1 cut(s) | 1373 |
| BstSCI | CCNGG | 4 cut(s) | 136, 807, 2271, 2773 |
| BstSFI | CTRYAG | 4 cut(s) | 870, 2016, 2731, 2816 |
| BstX2I | RGATCY | 4 cut(s) | 943, 977, 1570, 2759 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 77, 318 |
| BstYI | RGATCY | 4 cut(s) | 943, 977, 1570, 2759 |
| Bsu36I | CCTNAGG | 2 cut(s) | 54, 504 |
| BsuRI | GGCC | 7 cut(s) | 162, 263, 423, 868, 1614, 2132, 2717 |
| BtsCI | GGATG | 8 cut(s) | 137, 241, 328, 379, 817, 1116, 2043, 2228 |
| BtsIMutI | CAGTG | 4 cut(s) | 1416, 2516, 2740, 2752 |
| BveI | ACCTGC | 1 cut(s) | 2072 |
| Cac8I | GCNNGC | 4 cut(s) | 91, 246, 433, 2130 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2423 |
| Cfr13I | GGNCC | 3 cut(s) | 161, 1519, 1815 |
| CseI | GACGC | 1 cut(s) | 1518 |
| CsiI | ACCWGGT | 1 cut(s) | 2773 |
| Csp6I | GTAC | 4 cut(s) | 180, 1239, 1943, 2077 |
| CviQI | GTAC | 4 cut(s) | 180, 1239, 1943, 2077 |
| DraI | TTTAAA | 1 cut(s) | 1501 |
| DraIII | CACNNNGTG | 1 cut(s) | 1133 |
| EaeI | YGGCCR | 1 cut(s) | 2715 |
| Eam1104I | CTCTTC | 5 cut(s) | 264, 312, 354, 381, 1677 |
| EarI | CTCTTC | 5 cut(s) | 264, 312, 354, 381, 1677 |
| Ecl136II | GAGCTC | 1 cut(s) | 595 |
| Eco130I | CCWWGG | 2 cut(s) | 1223, 2109 |
| Eco147I | AGGCCT | 2 cut(s) | 868, 2132 |
| Eco24I | GRGCYC | 1 cut(s) | 597 |
| Eco31I | GGTCTC | 1 cut(s) | 1751 |
| Eco32I | GATATC | 2 cut(s) | 1018, 2368 |
| Eco47I | GGWCC | 2 cut(s) | 1519, 1815 |
| Eco53kI | GAGCTC | 1 cut(s) | 595 |
| Eco57I | CTGAAG | 5 cut(s) | 30, 924, 1875, 2340, 2853 |
| Eco81I | CCTNAGG | 2 cut(s) | 54, 504 |
| Eco88I | CYCGRG | 2 cut(s) | 336, 1998 |
| EcoICRI | GAGCTC | 1 cut(s) | 595 |
| EcoO109I | RGGNCCY | 2 cut(s) | 161, 1815 |
| EcoRII | CCWGG | 4 cut(s) | 136, 807, 2271, 2773 |
| EcoRV | GATATC | 2 cut(s) | 1018, 2368 |
| EcoT14I | CCWWGG | 2 cut(s) | 1223, 2109 |
| EcoT22I | ATGCAT | 1 cut(s) | 1090 |
| EcoT38I | GRGCYC | 1 cut(s) | 597 |
| ErhI | CCWWGG | 2 cut(s) | 1223, 2109 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 351, 383, 411, 443, 2601, 2633 |
| FauI | CCCGC | 1 cut(s) | 2088 |
| FauNDI | CATATG | 1 cut(s) | 538 |
| FblI | GTMKAC | 1 cut(s) | 2591 |
| FokI | GGATG | 8 cut(s) | 144, 248, 335, 366, 824, 1123, 2050, 2235 |
| FriOI | GRGCYC | 1 cut(s) | 597 |
| FspBI | CTAG | 3 cut(s) | 579, 755, 1295 |
| GsaI | CCCAGC | 1 cut(s) | 2704 |
| GsuI | CTGGAG | 3 cut(s) | 1440, 1935, 2567 |
| HaeIII | GGCC | 7 cut(s) | 162, 263, 423, 868, 1614, 2132, 2717 |
| HgaI | GACGC | 1 cut(s) | 1518 |
| HincII | GTYRAC | 1 cut(s) | 2215 |
| HindII | GTYRAC | 1 cut(s) | 2215 |
| HphI | GGTGA | 6 cut(s) | 678, 1037, 1351, 1476, 1861, 2777 |
| Hpy166II | GTNNAC | 7 cut(s) | 752, 1136, 1439, 2079, 2215, 2592, 2679 |
| Hpy8I | GTNNAC | 7 cut(s) | 752, 1136, 1439, 2079, 2215, 2592, 2679 |
| HpyAV | CCTTC | 7 cut(s) | 5, 226, 413, 968, 1204, 1697, 1775 |
| HpyCH4III | ACNGT | 6 cut(s) | 31, 205, 747, 1411, 2691, 2735 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 174, 245, 260, 1037, 1166, 1267, 1397, 1916 |
| LguI | GCTCTTC | 1 cut(s) | 264 |
| LmnI | GCTCC | 4 cut(s) | 305, 916, 1916, 2125 |
| MabI | ACCWGGT | 1 cut(s) | 2773 |
| MaeI | CTAG | 3 cut(s) | 579, 755, 1295 |
| MfeI | CAATTG | 2 cut(s) | 257, 2695 |
| MflI | RGATCY | 4 cut(s) | 943, 977, 1570, 2759 |
| MhlI | GDGCHC | 3 cut(s) | 597, 2478, 2689 |
| MlsI | TGGCCA | 1 cut(s) | 2717 |
| MluNI | TGGCCA | 1 cut(s) | 2717 |
| MlyI | GAGTC | 4 cut(s) | 125, 348, 1304, 2317 |
| MmeI | TCCRAC | 4 cut(s) | 819, 909, 2052, 2223 |
| Mox20I | TGGCCA | 1 cut(s) | 2717 |
| Mph1103I | ATGCAT | 1 cut(s) | 1090 |
| MscI | TGGCCA | 1 cut(s) | 2717 |
| MseI | TTAA | 6 cut(s) | 1286, 1500, 1595, 2255, 2334, 2345 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1374, 1733, 1952, 2641 |
| Msp20I | TGGCCA | 1 cut(s) | 2717 |
| MspA1I | CMGCKG | 2 cut(s) | 385, 2021 |
| MspR9I | CCNGG | 4 cut(s) | 138, 809, 2273, 2775 |
| MunI | CAATTG | 2 cut(s) | 257, 2695 |
| Mva1269I | GAATGC | 2 cut(s) | 991, 1484 |
| MvaI | CCWGG | 4 cut(s) | 138, 809, 2273, 2775 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 174, 245, 260, 1037, 1166, 1267, 1397, 1916 |
| NdeI | CATATG | 1 cut(s) | 538 |
| NlaIV | GGNNCC | 4 cut(s) | 16, 82, 1572, 1816 |
| NmuCI | GTSAC | 5 cut(s) | 25, 289, 1339, 1754, 1849 |
| NsiI | ATGCAT | 1 cut(s) | 1090 |
| NspI | RCATGY | 1 cut(s) | 1373 |
| NspV | TTCGAA | 1 cut(s) | 34 |
| PaeR7I | CTCGAG | 2 cut(s) | 336, 1998 |
| PceI | AGGCCT | 2 cut(s) | 868, 2132 |
| PciSI | GCTCTTC | 1 cut(s) | 264 |
| PctI | GAATGC | 2 cut(s) | 991, 1484 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1811 |
| PfoI | TCCNGGA | 1 cut(s) | 136 |
| PleI | GAGTC | 4 cut(s) | 124, 347, 1304, 2316 |
| PpsI | GAGTC | 4 cut(s) | 124, 347, 1304, 2316 |
| PpuMI | RGGWCCY | 1 cut(s) | 1815 |
| PsiI | TTATAA | 1 cut(s) | 1689 |
| Psp124BI | GAGCTC | 1 cut(s) | 597 |
| Psp5II | RGGWCCY | 1 cut(s) | 1815 |
| Psp6I | CCWGG | 4 cut(s) | 136, 807, 2271, 2773 |
| PspFI | CCCAGC | 1 cut(s) | 2700 |
| PspGI | CCWGG | 4 cut(s) | 136, 807, 2271, 2773 |
| PspN4I | GGNNCC | 4 cut(s) | 16, 82, 1572, 1816 |
| PspPI | GGNCC | 3 cut(s) | 161, 1519, 1815 |
| PspPPI | RGGWCCY | 1 cut(s) | 1815 |
| PstI | CTGCAG | 1 cut(s) | 2020 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2423 |
| PsuI | RGATCY | 4 cut(s) | 943, 977, 1570, 2759 |
| PvuII | CAGCTG | 1 cut(s) | 2021 |
| RsaI | GTAC | 4 cut(s) | 181, 1240, 1944, 2078 |
| RsaNI | GTAC | 4 cut(s) | 180, 1239, 1943, 2077 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1374, 1733, 1952, 2641 |
| SacI | GAGCTC | 1 cut(s) | 597 |
| SapI | GCTCTTC | 1 cut(s) | 264 |
| SaqAI | TTAA | 6 cut(s) | 1286, 1500, 1595, 2255, 2334, 2345 |
| Sau96I | GGNCC | 3 cut(s) | 161, 1519, 1815 |
| ScaI | AGTACT | 1 cut(s) | 1944 |
| SchI | GAGTC | 4 cut(s) | 125, 348, 1304, 2317 |
| ScrFI | CCNGG | 4 cut(s) | 138, 809, 2273, 2775 |
| SduI | GDGCHC | 3 cut(s) | 597, 2478, 2689 |
| SexAI | ACCWGGT | 1 cut(s) | 2773 |
| SfcI | CTRYAG | 4 cut(s) | 870, 2016, 2731, 2816 |
| Sfr274I | CTCGAG | 2 cut(s) | 336, 1998 |
| SfuI | TTCGAA | 1 cut(s) | 34 |
| SinI | GGWCC | 2 cut(s) | 1519, 1815 |
| SlaI | CTCGAG | 2 cut(s) | 336, 1998 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1374, 1733, 1952, 2641 |
| SmlI | CTYRAG | 3 cut(s) | 336, 862, 1998 |
| SmoI | CTYRAG | 3 cut(s) | 336, 862, 1998 |
| SseBI | AGGCCT | 2 cut(s) | 868, 2132 |
| SsiI | CCGC | 3 cut(s) | 383, 1169, 2095 |
| SspI | AATATT | 2 cut(s) | 766, 1777 |
| SspMI | CTAG | 3 cut(s) | 579, 755, 1295 |
| SstI | GAGCTC | 1 cut(s) | 597 |
| StuI | AGGCCT | 2 cut(s) | 868, 2132 |
| StyD4I | CCNGG | 4 cut(s) | 136, 807, 2271, 2773 |
| StyI | CCWWGG | 2 cut(s) | 1223, 2109 |
| TaaI | ACNGT | 6 cut(s) | 31, 205, 747, 1411, 2691, 2735 |
| TaqI | TCGA | 6 cut(s) | 34, 337, 1999, 2351, 2431, 2472 |
| TaqII | GACCGA | 1 cut(s) | 1507 |
| TatI | WGTACW | 3 cut(s) | 1238, 1942, 2076 |
| TauI | GCSGC | 1 cut(s) | 1172 |
| Tru1I | TTAA | 6 cut(s) | 1286, 1500, 1595, 2255, 2334, 2345 |
| Tru9I | TTAA | 6 cut(s) | 1286, 1500, 1595, 2255, 2334, 2345 |
| TscAI | CASTG | 4 cut(s) | 1416, 2523, 2740, 2752 |
| TseFI | GTSAC | 5 cut(s) | 25, 289, 1339, 1754, 1849 |
| Tsp45I | GTSAC | 5 cut(s) | 25, 289, 1339, 1754, 1849 |
| TspGWI | ACGGA | 2 cut(s) | 1773, 2821 |
| TspRI | CASTG | 4 cut(s) | 1416, 2523, 2740, 2752 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1811 |
| VpaK11BI | GGWCC | 2 cut(s) | 1519, 1815 |
| XapI | RAATTY | 2 cut(s) | 216, 1637 |
| XbaI | TCTAGA | 1 cut(s) | 1294 |
| XceI | RCATGY | 1 cut(s) | 1373 |
| XhoI | CTCGAG | 2 cut(s) | 336, 1998 |
| XmiI | GTMKAC | 1 cut(s) | 2591 |
| XspI | CTAG | 3 cut(s) | 579, 755, 1295 |
| ZrmI | AGTACT | 1 cut(s) | 1944 |
| Zsp2I | ATGCAT | 1 cut(s) | 1090 |