Prupe.4G091400_v2.0.a1

Small RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0002993
Physical Location & Seq
Forward (+)
4557342 .. 4565470
8129 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G091400.3

Sequence Viewer

Length: 2829 bp
ATGACTACATTTACACCTAAGGCTATTGTACACAAAAGATTTGGTAGCTCAGCCTGCTATAAAGTAGAGGAAGTGCACGAGTCCACGCAAAATGGATGTCCAGGGTTGGCCATTATGCAGAAGGGCCCTTGCCTTTATCGCTGTACCTTGCAGCTTCCAGAAGTTACGGTTGTATCTGGAATTTTTAAAAAGAAGAAGGATGCTGAGCAATCTGCTGCTGAATTGGCCTTAGAGAAGCTAGGCATTAATCCCGCAACAAAAAGCCCTTCTCTGCAGGAAGCATGGGATGCTTTAGTCGCTCGTGTCAGTTTTTTATTTTCAGATGAGTTCCTTTCAACTCTTCATCCGCTGAGTGGTCACTTCAGAGCAGCTTTGCAGAGAGATGGTGATCTTTCTGGTCAGATTCCTGCTTCTGTCATTGCCATCTTTGATGCAACACTTTGTAATATGTGTAAATCCCTTGATCCTAAGGTGGAGTCCAATCCTTTCTTGGTTATACTGTATGTTGTGAGGGCTGCTGCTAGATTATCTGAACTTATTTCTACTTCTGAGGAAGAGCTCTGGTTTAGGAGGCGAAATCCATACGCTCCTGAAACAGTGGAGTCATCATCTATCCAGCAATTAGGTTCCACAGAAATCTTTTCAATTGAAGCCATAAATGTACCATCTTCACTAGAGAAGACTGTTGAAAGAGTAATCCTTAATGTCTCATCTTCTGGATATTTCCTGGATGTTATTGCAAAACAACTTGGGTTATCGAAAACTTCTGACGTTCTGATCTCAAGGCCTATGGGTAAGGCTTCCTCTGAGACAAGACTGTACTTTGCTGCTCCCAAGCAATATCTGTTGGATATGTCTTCAGATCTTCTAAATGCCAAAGAAGCTTGTAACTCTGAAGGATCTTTGAATGCAAGAGCAAGTTACTTGTCTGGCCAAGATATATATGGTGACGCTATTTTAGCATCCATTGGATACACGTGGAGGTCCAAAGACCTTTTCTATGAAGATGTAACCCTGCAATCATATCACAGGATGGTCATTGGCAAGACACCAGGTGGAATTTACAAGTTGTCCAGAGGGGCAATACTTGCAGCTGAGTTACCTTTGGCATTTACTACCAATGCAAAATGGAAGGGTTCCTTTCCAAGGGAGATGCTCTGTACATTCTGCCGTCAGCACCGGCTTGAACCCGTCTTCTCTCCTCAAAGCACTCTAGAAGAATCATCCGAGTCACCAAAATCACACAAGAAGTTAAAGGTGACAGACTTGCCTGTGAAAGAGGCACAATATGAAAATGGCTGTGTTGTTGCTGCTGGCGTAAAGGACTCGGTTGAATCCGGAGGTAGCTTTAGATGTGAAGTGAAAATAGTTTCTAAATTTCAGGATTTTATTTTAGAGTGCTCACCGAAAGATTCTTTTAAGAAACAGAGCGATTCCATCCAGAATGTTTCTTTGAAAGTTCTGTTATGGTTAAATGCATATTTTCGAGATCCAACTGTGCCTTTGGAGAGACTAAATGCTTCTGCTGATGGCCTTAACATTAGATTTGATCCCCAAAACTTTATTAAAGTATTTATGCTGTGTCAACATATTCATAATGTTAGGCATAATGAAACTGAAGAAGGAAAATCAGTATGTTCTAACTCCGTGAATGTGTCATATGCTCTGCCTGGACGTGAATTTCGTTCTCTAAATATAGAAGGACCAGATTCTGGTGTTACTCCATCTAATGGATCCTTATCATCTGTAAGTTATTCCGTATCTTTGGTGACTGAAGGTGAACATATGAAAGAACTTCTGGAGAGTAGTGATGACTTTGAGTTTGAGATAGCATCTGGATCAGTGATTCCACATCTTGAGACAGTTGTCATGCAAATGACTGTTGGTCAGTCTGCTTTTTTCAGTATGGATTTGCCCCATCAAGAGTTGATTTTAGCTGCAGCTGATGATTCTGCTAGGATGCTTCCCTTGTTGTCTTCAAAGACCTGCTTCTTGGAGTACACTATAACTTTGTTGCAGGTAACAGAACCTCTGGAGGATAGAATGGAGCAGGCTCTTTTCAGCCCTCCACTTTCAAAACAGCGTGTCGAATATGCGGTGCAAAGCATCAAAGAATCTTGCGCCACTACTTTGGTTGACTTTGGATGTGGCTCTGGTAGTTTGTTGGATTCTTTATTAAACTATCCAACTTCTCTGGAAAAAATTGCTGGTGTTGACATTTCACAGAAGAGTCTTACCCGTGCGGCAAAGATACTTCATTCCAAATTAGATGCCAGTATGTCAGCCATAAATTCTGCAGTTCTGTATGACGGTTCAATTACAGCTTTTGATTCACGATTGAGTGGATTTGATATTGGTACTTGCTTAGAGGTCATAGAGCATATGGAGGAAGATCAAGCATCTGAGTTTGGCAATGTGGTACTGAGTTTATTTCGTCCAAGGGTTCTTATTGTCTCCACTCCAAATTATGAATACAATGTGATACTCCAGAAATCCAATTTGTCAAGCCAAGAAGATGATCCTGAAGACAAAAATCAAGCACAATCATGTAAATTTCGTAACCATGACCACAAGTTCGAGTGGACAAGAGAACAGTTCAATTGCTGGGCAACTGAATTGGCCACGAGGCACAATTACAGTGTTGAGTTCAGTGGGGTTGGGGGATCTGGTGATACAGAACCAGGTTTTGCTTCCCAGATTGCTGTCTTTATAAGGGGACCTGTACGTCAGGAAGATGTTCTTCCAGAGGTTTCAGATATGGAACATCCTTACAAAGTTATATGGGAATGGAGCAGCAACGATAGCTCAAGATCTGCTGTGACAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001510 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0009451 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009653 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010093 GO:0010305 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016740 GO:0016741 GO:0019222 GO:0022414 GO:0031047 GO:0031050 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035279 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048519 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0098542 GO:0098586 GO:0098795 GO:0099402 GO:0140098 GO:1901360 GO:1901698 GO:1901699 GO:1905392 GO:1905393 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C Methyltransf_11 Methyltransf_12 Methyltransf_31 dsrm

Protein Analysis

943

Amino Acids

104.17

Weight (kDa)

5.24

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2711
AasI GACNNNNNNGTC 1 cut(s) 2724
Acc36I ACCTGC 2 cut(s) 1994, 2008
AccB7I CCANNNNNTGG 2 cut(s) 1712, 1730
AccIII TCCGGA 1 cut(s) 1337
AciI CCGC 4 cut(s) 252, 347, 2096, 2243
AclWI GGATC 9 cut(s) 458, 907, 1484, 1544, 1728, 1741, 1846, 2513, 2671
AcoI YGGCCR 3 cut(s) 108, 931, 2619
AcsI RAATTY 6 cut(s) 180, 1059, 1376, 1679, 2290, 2552
AcuI CTGAAG 6 cut(s) 346, 843, 915, 1638, 1794, 2544
AcvI CACGTG 1 cut(s) 978
AdeI CACNNNGTG 1 cut(s) 1055
AfaI GTAC 9 cut(s) 30, 145, 663, 821, 1162, 2000, 2359, 2421, 2724
AfiI CCNNNNNNNGG 4 cut(s) 353, 1146, 1712, 1730
AflIII ACRYGT 1 cut(s) 975
AhdI GACNNNNNGTC 1 cut(s) 1884
AjiI CACGTC 1 cut(s) 1676
AjnI CCWGG 5 cut(s) 100, 726, 1051, 1669, 2680
AjuI GAANNNNNNNTTGG 2 cut(s) 980, 1012
Alw21I GWGCWC 3 cut(s) 78, 561, 1403
Alw26I GTCTC 5 cut(s) 712, 803, 1504, 1853, 2458
Alw44I GTGCAC 1 cut(s) 74
AlwI GGATC 9 cut(s) 458, 907, 1484, 1544, 1728, 1741, 1846, 2513, 2671
AlwNI CAGNNNCTG 1 cut(s) 1712
Aor13HI TCCGGA 1 cut(s) 1337
AoxI GGCC 7 cut(s) 108, 124, 225, 785, 931, 1531, 2619
ApaI GGGCCC 1 cut(s) 128
ApaLI GTGCAC 1 cut(s) 74
ApoI RAATTY 6 cut(s) 180, 1059, 1376, 1679, 2290, 2552
ArsI GACNNNNNNTTYG 8 cut(s) 82, 114, 1665, 1697, 1805, 1837, 2558, 2590
AseI ATTAAT 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 2736
AspLEI GCGC 1 cut(s) 2123
AspS9I GGNCC 5 cut(s) 124, 125, 984, 1703, 2717
AsuHPI GGTGA 8 cut(s) 398, 959, 1224, 1270, 1395, 1780, 1790, 2681
AvaII GGWCC 3 cut(s) 984, 1703, 2717
AxyI CCTNAGG 2 cut(s) 18, 468
BaeGI GKGCMC 2 cut(s) 78, 128
BaeI ACNNNNGTAYC 2 cut(s) 156, 189
BalI TGGCCA 3 cut(s) 110, 933, 2621
BamHI GGATCC 1 cut(s) 1733
BanII GRGCYC 2 cut(s) 128, 561
BauI CACGAG 3 cut(s) 77, 300, 2623
BbrPI CACGTG 1 cut(s) 978
BbsI GAAGAC 5 cut(s) 686, 849, 1186, 1968, 2532
Bbv12I GWGCWC 3 cut(s) 78, 561, 1403
BccI CCATC 8 cut(s) 377, 431, 673, 1027, 1445, 1523, 1732, 1926
BceAI ACGGC 1 cut(s) 1155
BciT130I CCWGG 5 cut(s) 102, 728, 1053, 1671, 2682
BciVI GTATCC 1 cut(s) 965
BcoDI GTCTC 5 cut(s) 712, 803, 1504, 1853, 2458
BfaI CTAG 5 cut(s) 239, 522, 674, 1214, 1956
BfmI CTRYAG 3 cut(s) 272, 1938, 2295
BfuAI ACCTGC 2 cut(s) 1994, 2008
BfuI GTATCC 1 cut(s) 965
BglII AGATCT 2 cut(s) 862, 2810
BlpI GCTNAGC 2 cut(s) 49, 204
Bme1390I CCNGG 5 cut(s) 102, 728, 1053, 1671, 2682
Bme18I GGWCC 3 cut(s) 984, 1703, 2717
BmeRI GACNNNNNGTC 1 cut(s) 1884
BmgBI CACGTC 1 cut(s) 1676
BmgT120I GGNCC 5 cut(s) 124, 125, 984, 1703, 2717
BmiI GGNNCC 5 cut(s) 126, 628, 1138, 1735, 2718
BmrFI CCNGG 5 cut(s) 102, 728, 1053, 1671, 2682
BoxI GACNNNNGTC 1 cut(s) 1865
BpiI GAAGAC 5 cut(s) 686, 849, 1186, 1968, 2532
BpmI CTGGAG 3 cut(s) 1820, 2054, 2471
Bpu1102I GCTNAGC 2 cut(s) 49, 204
BpuEI CTTGAG 3 cut(s) 766, 1877, 2791
BsaAI YACGTR 1 cut(s) 978
BsaBI GATNNNNATC 2 cut(s) 387, 1738
BsaJI CCNNGG 3 cut(s) 101, 1145, 2438
BsaWI WCCGGW 1 cut(s) 1337
Bsc4I CCNNNNNNNGG 4 cut(s) 353, 1146, 1712, 1730
Bse118I RCCGGY 1 cut(s) 1179
Bse1I ACTGG 1 cut(s) 2274
Bse21I CCTNAGG 2 cut(s) 18, 468
Bse3DI GCAATG 2 cut(s) 417, 2419
Bse8I GATNNNNATC 2 cut(s) 387, 1738
BseAI TCCGGA 1 cut(s) 1337
BseBI CCWGG 5 cut(s) 102, 728, 1053, 1671, 2682
BseDI CCNNGG 3 cut(s) 101, 1145, 2438
BseJI GATNNNNATC 2 cut(s) 387, 1738
BseLI CCNNNNNNNGG 4 cut(s) 353, 1146, 1712, 1730
BseMI GCAATG 2 cut(s) 417, 2419
BseMII CTCAG 8 cut(s) 63, 195, 341, 540, 798, 1086, 2394, 2414
BseNI ACTGG 1 cut(s) 2274
BseRI GAGGAG 1 cut(s) 1191
BseSI GKGCMC 2 cut(s) 78, 128
BseYI CCCAGC 1 cut(s) 2604
BshFI GGCC 7 cut(s) 110, 126, 227, 787, 933, 1533, 2621
BsiHKAI GWGCWC 3 cut(s) 78, 561, 1403
BsiSI CCGG 2 cut(s) 1180, 1338
BslFI GGGAC 1 cut(s) 2730
BslI CCNNNNNNNGG 4 cut(s) 353, 1146, 1712, 1730
BsmAI GTCTC 5 cut(s) 712, 803, 1504, 1853, 2458
BsmFI GGGAC 1 cut(s) 2730
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 7 cut(s) 110, 126, 227, 787, 933, 1533, 2621
Bsp120I GGGCCC 1 cut(s) 124
Bsp1286I GDGCHC 4 cut(s) 78, 128, 561, 1403
Bsp13I TCCGGA 1 cut(s) 1337
Bsp1407I TGTACA 2 cut(s) 28, 1160
Bsp1720I GCTNAGC 2 cut(s) 49, 204
BspACI CCGC 4 cut(s) 252, 347, 2096, 2243
BspANI GGCC 7 cut(s) 110, 126, 227, 787, 933, 1533, 2621
BspCNI CTCAG 8 cut(s) 62, 196, 342, 541, 799, 1087, 2395, 2415
BspEI TCCGGA 1 cut(s) 1337
BspLI GGNNCC 5 cut(s) 126, 628, 1138, 1735, 2718
BspMAI CTGCAG 3 cut(s) 276, 1942, 2299
BspMI ACCTGC 2 cut(s) 1994, 2008
BspPI GGATC 9 cut(s) 458, 907, 1484, 1544, 1728, 1741, 1846, 2513, 2671
BspQI GCTCTTC 1 cut(s) 549
BsrDI GCAATG 2 cut(s) 417, 2419
BsrFI RCCGGY 1 cut(s) 1179
BsrGI TGTACA 2 cut(s) 28, 1160
BsrI ACTGG 1 cut(s) 2274
BssAI RCCGGY 1 cut(s) 1179
BssECI CCNNGG 3 cut(s) 101, 1145, 2438
BssSI CACGAG 3 cut(s) 77, 300, 2623
BssT1I CCWWGG 2 cut(s) 1145, 2438
Bst2BI CACGAG 3 cut(s) 77, 300, 2623
Bst2UI CCWGG 5 cut(s) 102, 728, 1053, 1671, 2682
Bst6I CTCTTC 3 cut(s) 345, 549, 2222
BstAPI GCANNNNNTGC 2 cut(s) 287, 1088
BstAUI TGTACA 2 cut(s) 28, 1160
BstBAI YACGTR 1 cut(s) 978
BstC8I GCNNGC 3 cut(s) 55, 1315, 2052
BstENI CCTNNNNNAGG 1 cut(s) 1144
BstHHI GCGC 1 cut(s) 2123
BstMAI GTCTC 5 cut(s) 712, 803, 1504, 1853, 2458
BstMWI GCNNNNNNNGC 9 cut(s) 54, 138, 224, 287, 296, 881, 959, 1088, 2802
BstNI CCWGG 5 cut(s) 102, 728, 1053, 1671, 2682
BstPAI GACNNNNGTC 1 cut(s) 1865
BstSCI CCNGG 5 cut(s) 100, 726, 1051, 1669, 2680
BstSFI CTRYAG 3 cut(s) 272, 1938, 2295
BstSLI GKGCMC 2 cut(s) 78, 128
BstV2I GAAGAC 5 cut(s) 686, 849, 1186, 1968, 2532
BstX2I RGATCY 6 cut(s) 862, 899, 1489, 1733, 2663, 2810
BstXI CCANNNNNNTGG 1 cut(s) 2131
BstYI RGATCY 6 cut(s) 862, 899, 1489, 1733, 2663, 2810
Bsu36I CCTNAGG 2 cut(s) 18, 468
BsuI GTATCC 1 cut(s) 965
BsuRI GGCC 7 cut(s) 110, 126, 227, 787, 933, 1533, 2621
BtrI CACGTC 1 cut(s) 1676
BtsIMutI CAGTG 4 cut(s) 603, 1848, 2644, 2656
BveI ACCTGC 2 cut(s) 1994, 2008
Cac8I GCNNGC 3 cut(s) 55, 1315, 2052
CaiI CAGNNNCTG 1 cut(s) 1712
CfoI GCGC 1 cut(s) 2123
Cfr10I RCCGGY 1 cut(s) 1179
Cfr13I GGNCC 5 cut(s) 124, 125, 984, 1703, 2717
CseI GACGC 1 cut(s) 959
CsiI ACCWGGT 2 cut(s) 1051, 2680
Csp6I GTAC 9 cut(s) 29, 144, 662, 820, 1161, 1999, 2358, 2420, 2723
CviAII CATG 4 cut(s) 282, 1870, 2547, 2564
CviQI GTAC 9 cut(s) 29, 144, 662, 820, 1161, 1999, 2358, 2420, 2723
DraI TTTAAA 1 cut(s) 187
DraIII CACNNNGTG 1 cut(s) 1055
DrdI GACNNNNNNGTC 1 cut(s) 2724
DriI GACNNNNNGTC 1 cut(s) 1884
DseDI GACNNNNNNGTC 1 cut(s) 2724
EaeI YGGCCR 3 cut(s) 108, 931, 2619
Eam1104I CTCTTC 3 cut(s) 345, 549, 2222
Eam1105I GACNNNNNGTC 1 cut(s) 1884
EarI CTCTTC 3 cut(s) 345, 549, 2222
Ecl136II GAGCTC 1 cut(s) 559
Eco130I CCWWGG 2 cut(s) 1145, 2438
Eco147I AGGCCT 1 cut(s) 787
Eco24I GRGCYC 2 cut(s) 128, 561
Eco47I GGWCC 3 cut(s) 984, 1703, 2717
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 6 cut(s) 346, 843, 915, 1638, 1794, 2544
Eco72I CACGTG 1 cut(s) 978
Eco81I CCTNAGG 2 cut(s) 18, 468
EcoICRI GAGCTC 1 cut(s) 559
EcoNI CCTNNNNNAGG 1 cut(s) 1144
EcoO109I RGGNCCY 3 cut(s) 124, 125, 2717
EcoRII CCWGG 5 cut(s) 100, 726, 1051, 1669, 2680
EcoT14I CCWWGG 2 cut(s) 1145, 2438
EcoT22I ATGCAT 1 cut(s) 1480
EcoT38I GRGCYC 2 cut(s) 128, 561
ErhI CCWWGG 2 cut(s) 1145, 2438
FaeI CATG 4 cut(s) 285, 1873, 2550, 2567
FalI AAGNNNNNCTT 6 cut(s) 1124, 1156, 1973, 2005, 2724, 2756
FaqI GGGAC 1 cut(s) 2730
FatI CATG 4 cut(s) 281, 1869, 2546, 2563
FauI CCCGC 1 cut(s) 259
FauNDI CATATG 3 cut(s) 1660, 1785, 2382
FriOI GRGCYC 2 cut(s) 128, 561
FspBI CTAG 5 cut(s) 239, 522, 674, 1214, 1956
GlaI GCGC 1 cut(s) 2122
GsaI CCCAGC 1 cut(s) 2608
GsuI CTGGAG 3 cut(s) 1820, 2054, 2471
HaeIII GGCC 7 cut(s) 110, 126, 227, 787, 933, 1533, 2621
HapII CCGG 2 cut(s) 1180, 1338
HgaI GACGC 1 cut(s) 959
HhaI GCGC 1 cut(s) 2123
Hin1II CATG 4 cut(s) 285, 1873, 2550, 2567
Hin6I GCGC 1 cut(s) 2121
HinP1I GCGC 1 cut(s) 2121
HincII GTYRAC 3 cut(s) 1586, 2137, 2215
HindII GTYRAC 3 cut(s) 1586, 2137, 2215
HindIII AAGCTT 1 cut(s) 882
HpaII CCGG 2 cut(s) 1180, 1338
HphI GGTGA 8 cut(s) 398, 959, 1224, 1270, 1395, 1780, 1790, 2681
Hpy166II GTNNAC 9 cut(s) 31, 76, 84, 1586, 1781, 2001, 2137, 2215, 2583
Hpy8I GTNNAC 9 cut(s) 31, 76, 84, 1586, 1781, 2001, 2137, 2215, 2583
HpyAV CCTTC 8 cut(s) 115, 190, 276, 890, 1126, 1616, 1694, 1769
HpyCH4IV ACGT 4 cut(s) 771, 977, 1675, 2725
HpyF10VI GCNNNNNNNGC 9 cut(s) 54, 138, 224, 287, 296, 881, 959, 1088, 2802
HpySE526I ACGT 4 cut(s) 771, 977, 1675, 2725
Hsp92II CATG 4 cut(s) 285, 1873, 2550, 2567
HspAI GCGC 1 cut(s) 2121
Kpn2I TCCGGA 1 cut(s) 1337
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 4 cut(s) 592, 835, 2047, 2790
MabI ACCWGGT 2 cut(s) 1051, 2680
MaeI CTAG 5 cut(s) 239, 522, 674, 1214, 1956
MaeII ACGT 4 cut(s) 771, 977, 1675, 2725
MfeI CAATTG 2 cut(s) 645, 2599
MflI RGATCY 6 cut(s) 862, 899, 1489, 1733, 2663, 2810
MhlI GDGCHC 4 cut(s) 78, 128, 561, 1403
MlsI TGGCCA 3 cut(s) 110, 933, 2621
MluNI TGGCCA 3 cut(s) 110, 933, 2621
MlyI GAGTC 6 cut(s) 89, 485, 611, 1238, 1319, 2239
MmeI TCCRAC 4 cut(s) 828, 1517, 2145, 2210
Mox20I TGGCCA 3 cut(s) 110, 933, 2621
Mph1103I ATGCAT 1 cut(s) 1480
MroI TCCGGA 1 cut(s) 1337
MroXI GAANNNNTTC 1 cut(s) 2736
MscI TGGCCA 3 cut(s) 110, 933, 2621
MseI TTAA 9 cut(s) 186, 246, 702, 1253, 1419, 1472, 1536, 1566, 2177
MslI CAYNNNNRTG 2 cut(s) 1874, 2545
Msp20I TGGCCA 3 cut(s) 110, 933, 2621
MspA1I CMGCKG 3 cut(s) 349, 1094, 1943
MspI CCGG 2 cut(s) 1180, 1338
MspR9I CCNGG 5 cut(s) 102, 728, 1053, 1671, 2682
MunI CAATTG 2 cut(s) 645, 2599
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 5 cut(s) 102, 728, 1053, 1671, 2682
MwoI GCNNNNNNNGC 9 cut(s) 54, 138, 224, 287, 296, 881, 959, 1088, 2802
NdeI CATATG 3 cut(s) 1660, 1785, 2382
NlaIII CATG 4 cut(s) 285, 1873, 2550, 2567
NlaIV GGNNCC 5 cut(s) 126, 628, 1138, 1735, 2718
NmuCI GTSAC 6 cut(s) 356, 947, 1230, 1258, 1768, 2818
NsiI ATGCAT 1 cut(s) 1480
PceI AGGCCT 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 1681
PctI GAATGC 1 cut(s) 913
PdmI GAANNNNTTC 1 cut(s) 2736
PflMI CCANNNNNTGG 2 cut(s) 1712, 1730
PfoI TCCNGGA 1 cut(s) 726
PleI GAGTC 6 cut(s) 88, 484, 610, 1237, 1319, 2238
PmaCI CACGTG 1 cut(s) 978
PmlI CACGTG 1 cut(s) 978
PpsI GAGTC 6 cut(s) 88, 484, 610, 1237, 1319, 2238
Ppu21I YACGTR 1 cut(s) 978
PpuMI RGGWCCY 1 cut(s) 2717
PshAI GACNNNNGTC 1 cut(s) 1865
PshBI ATTAAT 1 cut(s) 246
PsiI TTATAA 1 cut(s) 2711
Psp124BI GAGCTC 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 2717
Psp6I CCWGG 5 cut(s) 100, 726, 1051, 1669, 2680
PspCI CACGTG 1 cut(s) 978
PspFI CCCAGC 1 cut(s) 2604
PspGI CCWGG 5 cut(s) 100, 726, 1051, 1669, 2680
PspN4I GGNNCC 5 cut(s) 126, 628, 1138, 1735, 2718
PspOMI GGGCCC 1 cut(s) 124
PspPI GGNCC 5 cut(s) 124, 125, 984, 1703, 2717
PspPPI RGGWCCY 1 cut(s) 2717
PstI CTGCAG 3 cut(s) 276, 1942, 2299
PstNI CAGNNNCTG 1 cut(s) 1712
PsuI RGATCY 6 cut(s) 862, 899, 1489, 1733, 2663, 2810
PvuII CAGCTG 2 cut(s) 1094, 1943
RsaI GTAC 9 cut(s) 30, 145, 663, 821, 1162, 2000, 2359, 2421, 2724
RsaNI GTAC 9 cut(s) 29, 144, 662, 820, 1161, 1999, 2358, 2420, 2723
RseI CAYNNNNRTG 2 cut(s) 1874, 2545
SacI GAGCTC 1 cut(s) 561
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 9 cut(s) 186, 246, 702, 1253, 1419, 1472, 1536, 1566, 2177
Sau96I GGNCC 5 cut(s) 124, 125, 984, 1703, 2717
SchI GAGTC 6 cut(s) 89, 485, 611, 1238, 1319, 2239
ScrFI CCNGG 5 cut(s) 102, 728, 1053, 1671, 2682
SduI GDGCHC 4 cut(s) 78, 128, 561, 1403
SexAI ACCWGGT 2 cut(s) 1051, 2680
SfcI CTRYAG 3 cut(s) 272, 1938, 2295
SinI GGWCC 3 cut(s) 984, 1703, 2717
SmiMI CAYNNNNRTG 2 cut(s) 1874, 2545
SmlI CTYRAG 3 cut(s) 781, 1856, 2806
SmoI CTYRAG 3 cut(s) 781, 1856, 2806
SseBI AGGCCT 1 cut(s) 787
SsiI CCGC 4 cut(s) 252, 347, 2096, 2243
SspMI CTAG 5 cut(s) 239, 522, 674, 1214, 1956
SstI GAGCTC 1 cut(s) 561
StuI AGGCCT 1 cut(s) 787
StyD4I CCNGG 5 cut(s) 100, 726, 1051, 1669, 2680
StyI CCWWGG 2 cut(s) 1145, 2438
TaiI ACGT 4 cut(s) 774, 980, 1678, 2728
TaqI TCGA 4 cut(s) 758, 1486, 2088, 2577
TatI WGTACW 4 cut(s) 28, 819, 1160, 1998
TauI GCSGC 1 cut(s) 2246
Tru1I TTAA 9 cut(s) 186, 246, 702, 1253, 1419, 1472, 1536, 1566, 2177
Tru9I TTAA 9 cut(s) 186, 246, 702, 1253, 1419, 1472, 1536, 1566, 2177
TscAI CASTG 4 cut(s) 603, 1848, 2644, 2656
TseFI GTSAC 6 cut(s) 356, 947, 1230, 1258, 1768, 2818
Tsp45I GTSAC 6 cut(s) 356, 947, 1230, 1258, 1768, 2818
TspDTI ATGAA 8 cut(s) 332, 1017, 1305, 1583, 1626, 1802, 2246, 2484
TspGWI ACGGA 2 cut(s) 1636, 1747
TspRI CASTG 4 cut(s) 603, 1848, 2644, 2656
Van91I CCANNNNNTGG 2 cut(s) 1712, 1730
VneI GTGCAC 1 cut(s) 74
VpaK11BI GGWCC 3 cut(s) 984, 1703, 2717
VspI ATTAAT 1 cut(s) 246
XagI CCTNNNNNAGG 1 cut(s) 1144
XapI RAATTY 6 cut(s) 180, 1059, 1376, 1679, 2290, 2552
XbaI TCTAGA 1 cut(s) 1213
XcmI CCANNNNNNNNNTGG 2 cut(s) 487, 941
XmnI GAANNNNTTC 1 cut(s) 2736
XspI CTAG 5 cut(s) 239, 522, 674, 1214, 1956
Zsp2I ATGCAT 1 cut(s) 1480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.