Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001235.1

Orthogroup ID

OG0002993

Physical Location & Seq

Genomic Coordinates Reverse (-)

129965 .. 131782

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001235.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atggagcaggccttgttcagccctccactttcaaaacaacgagtggaatatgcagtgcaaagcatcaaagaatcttgtgctactactttggttgactttggatgtggctctggtagtttgttggattccttattaaattatccaacttctctggaaaaaattgctggtgttgatctttcacaaaagagtcttacccgtgcggcaaagatacttaattccaaattaaactcgacttcagatgctgatacctcatgtacaccactaaaatctgcaattctttatgatggttcggttacagatcatgattctcgattgtgtgggtttgatataggcacttgcttagaggtaatcgagcatatggaggaagatcaagcacatctctttggcaatgtggcattgagttatttccgtcctaaaattctcattgtctcgacaccaaactatgaatataatgtcatactccagaagtctactttatcaaccacagaagatgatgttgatgaaagaaatgaatcacaaccttgtaagtttcgtaaccatgaccacaagtttgagtggacgagagcgcagttcaattgctgggcaactgaattggccacgaggcacaactacagtgttgagttcagtggggttggtggatctggtgatgaaccaggttttgcttcccagattgctgtcttcagacggagagccatacctcaggaaggttatcctgaagaactctcggattcggaacatcgttaccaagtcatatgggaatggactagtagtgataggtcaagatgtagtccaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001510 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0009451 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009653 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010093 GO:0010305 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016740 GO:0016741 GO:0019222 GO:0022414 GO:0031047 GO:0031050 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035279 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048519 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0098542 GO:0098586 GO:0098795 GO:0099402 GO:0140098 GO:1901360 GO:1901698 GO:1901699 GO:1905392 GO:1905393 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C Methyltransf_11 Methyltransf_12 Methyltransf_31 dsrm

Protein Analysis

265

Amino Acids

29.66

Weight (kDa)

4.98

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20910 AT4G20910 AT4G20920 AT4G20920 AT4G20920 AT4G20920 AT4G20920
fragaria_vesca	FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230
malus_domestica	MD05G1271600.v1.1 MD10G1252200.v1.1
prunus_persica	Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1
pyrus_communis	pycom05g25390
rosa_chinensis	RchiOBHm_Chr5g0016471
rosa_laevigata	RLG00000032251
rosa_multiflora	Rmu_sc0001235.1_g000026 Rmu_sc0025842.1_g000001 Rmu_sc0030879.1_g000002
rosa_roxburghii	Rroxscaffold_1G00060430
rosa_rugosa	Rorug05G0032500 Rorug05G0032500
rosa_samantha	Rh5AG126200 Rh5BG125100 Rh5CG137500 Rh5DG125000
rosa_wichuraiana	Rw5G010940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	470
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	3 cut(s)	219, 664, 735
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	2 cut(s)	33, 574
AhlI	ACTAGT	1 cut(s)	764
AjnI	CCWGG	1 cut(s)	652
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	646
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	9, 594
ApoI	RAATTY	1 cut(s)	417
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AspLEI	GCGC	1 cut(s)	568
AsuHPI	GGTGA	1 cut(s)	656
AxyI	CCTNAGG	1 cut(s)	699
BalI	TGGCCA	1 cut(s)	596
BauI	CACGAG	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	670
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	433
BcuI	ACTAGT	1 cut(s)	764
BfaI	CTAG	1 cut(s)	765
BfmI	CTRYAG	1 cut(s)	610
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	654
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	72, 229
BpiI	GAAGAC	1 cut(s)	670
BpmI	CTGGAG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse21I	CCTNAGG	1 cut(s)	699
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	654
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	713
BseYI	CCCAGC	1 cut(s)	579
BshFI	GGCC	2 cut(s)	11, 596
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	11, 596
Bsp1407I	TGTACA	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	172, 298, 367, 638
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	2 cut(s)	11, 596
BspCNI	CTCAG	1 cut(s)	712
BspHI	TCATGA	1 cut(s)	301
BspPI	GGATC	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	394
BsrGI	TGTACA	1 cut(s)	254
BssMI	GATC	4 cut(s)	172, 298, 367, 638
BssSI	CACGAG	1 cut(s)	598
Bst2BI	CACGAG	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	340, 699
BstENI	CCTNNNNNAGG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	4 cut(s)	175, 301, 370, 641
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	172, 298, 367, 638
BstNI	CCWGG	1 cut(s)	654
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	670
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
Bsu36I	CCTNAGG	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	11, 596
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	60, 619, 631
Cac8I	GCNNGC	1 cut(s)	9
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	568
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	3 cut(s)	252, 302, 539
CviJI	RGCY	5 cut(s)	11, 21, 108, 596, 692
CviKI_1	RGCY	5 cut(s)	11, 21, 108, 596, 692
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	2 cut(s)	340, 699
DpnI	GATC	4 cut(s)	174, 300, 369, 640
DpnII	GATC	4 cut(s)	172, 298, 367, 638
EaeI	YGGCCR	1 cut(s)	594
Eco147I	AGGCCT	1 cut(s)	11
Eco57I	CTGAAG	3 cut(s)	219, 664, 735
Eco81I	CCTNAGG	1 cut(s)	699
EcoNI	CCTNNNNNAGG	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	652
FaeI	CATG	3 cut(s)	255, 305, 542
FatI	CATG	3 cut(s)	251, 301, 538
FauNDI	CATATG	2 cut(s)	357, 752
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	11, 596
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	3 cut(s)	255, 305, 542
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	6 cut(s)	71, 125, 187, 305, 512, 728
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	4 cut(s)	94, 257, 471, 558
Hpy188I	TCNGA	4 cut(s)	238, 683, 727, 733
Hpy188III	TCNNGA	8 cut(s)	152, 302, 309, 430, 463, 701, 713, 780
Hpy8I	GTNNAC	4 cut(s)	94, 257, 471, 558
HpyAV	CCTTC	1 cut(s)	698
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4V	TGCA	3 cut(s)	53, 58, 272
HpyF3I	CTNAG	2 cut(s)	340, 699
Hsp92II	CATG	3 cut(s)	255, 305, 542
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	4 cut(s)	172, 298, 367, 638
LmnI	GCTCC	1 cut(s)	4
LweI	GCATC	2 cut(s)	72, 229
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	1 cut(s)	765
MaeIII	GTNAC	3 cut(s)	292, 533, 740
MalI	GATC	4 cut(s)	174, 300, 369, 640
MboI	GATC	4 cut(s)	172, 298, 367, 638
MboII	GAAGA	4 cut(s)	377, 500, 670, 728
MfeI	CAATTG	1 cut(s)	574
MflI	RGATCY	1 cut(s)	638
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	8 cut(s)	136, 159, 214, 221, 273, 417, 574, 590
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	2 cut(s)	102, 167
MnlI	CCTC	6 cut(s)	33, 259, 337, 355, 594, 708
Mox20I	TGGCCA	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	4 cut(s)	134, 213, 224, 796
Msp20I	TGGCCA	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	654
MunI	CAATTG	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	654
NdeI	CATATG	2 cut(s)	357, 752
NdeII	GATC	4 cut(s)	172, 298, 367, 638
NlaIII	CATG	3 cut(s)	255, 305, 542
PagI	TCATGA	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	11
PfeI	GAWTC	5 cut(s)	71, 125, 305, 512, 728
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	652
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	638
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	4 cut(s)	134, 213, 224, 796
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	172, 298, 367, 638
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	654
SetI	ASST	7 cut(s)	251, 348, 523, 658, 700, 709, 779
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	2 cut(s)	72, 229
SfcI	CTRYAG	1 cut(s)	610
SpeI	ACTAGT	1 cut(s)	764
Sse9I	AATT	8 cut(s)	136, 159, 214, 221, 273, 417, 574, 590
SseBI	AGGCCT	1 cut(s)	11
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	765
StuI	AGGCCT	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	652
TaaI	ACNGT	1 cut(s)	614
TaqI	TCGA	4 cut(s)	230, 310, 351, 431
TasI	AATT	8 cut(s)	136, 159, 214, 221, 273, 417, 574, 590
TatI	WGTACW	1 cut(s)	254
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	5 cut(s)	71, 125, 305, 512, 728
Tru1I	TTAA	4 cut(s)	134, 213, 224, 796
Tru9I	TTAA	4 cut(s)	134, 213, 224, 796
TscAI	CASTG	3 cut(s)	60, 619, 631
TspDTI	ATGAA	4 cut(s)	459, 516, 525, 663
TspGWI	ACGGA	2 cut(s)	398, 700
TspRI	CASTG	3 cut(s)	60, 619, 631
XagI	CCTNNNNNAGG	1 cut(s)	702
XapI	RAATTY	1 cut(s)	417
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.