Rmu_sc0025842.1_g000001

Small RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025842.1
OG0002993
Physical Location & Seq
Forward (+)
314 .. 2328
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025842.1_g000001.1.cds

Sequence Viewer

Length: 1137 bp
atggaaactgaaggagcctcatctgtcacagttcgaaagactagctgtacacctaaggctattatacaccaaaagtttggtaccaatgcctgctataaacatgaggaagtgcatgagtctgctgaaaatggatgtccaggattagccattgtgcagaaaggcccttgcctttaccgctgtaccttgcagcttccagaaattactgttgtatctggaatctttaaaaagaagaaagatgctgaacaatctgctgctgaattggccttagaaaagctgcgcatcacccccgccacaaaaagctcctctcttccagaagcatgggatagtttagtctctcgggtcaaatatttattttcagaagagttcctttcatctcttcatccgctgagtggtcatttgagagcagctttgcaaagagaaggtcatcttgctggcttgatccctgcttgtgctatggccgtctttgatgcaacactaagtaatctgtgtaaatccattgatcctaaggtggaagcaaatcccttcttgataatatcatatgttatgagggctgctgctaaattatctggatttattgctagttcagagcgagagctctggattaggaggcaaaatccataccctccagaaattatagagttatcatctatccagcaaaatccaaacaattctgaaattatagtctcaccatctaaccggcaatcaggctctcctgaaatccttatggttgaagccataaaaataccgtgttcactagagaagactgttgaaagagtaattcttaatctaacatcttctggttatttcctggatgttattgcaaagcaacttgggttgttggaagctgctgaccttatgatctcaaggcctgtaggtaaggcttcctctgagacaaggctgcactttgctgctccaaagcaatatctgttggatatttcttcagatcttcttcatgccaaagaagttcgtagttttgaaggatctttgaatgcaagagcaagttacttgtctggtcaagatatctatggtgatgctattttggcaaccattggctacacatggaggtccaaagaccttttctatgaagatgtatctgtgaaatcatattacaggtcttttctaacttatgctatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001510 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0009451 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009653 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010093 GO:0010305 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016740 GO:0016741 GO:0019222 GO:0022414 GO:0031047 GO:0031050 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035279 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048519 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0098542 GO:0098586 GO:0098795 GO:0099402 GO:0140098 GO:1901360 GO:1901698 GO:1901699 GO:1905392 GO:1905393 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C Methyltransf_11 Methyltransf_12 Methyltransf_31 dsrm

Protein Analysis

378

Amino Acids

41.67

Weight (kDa)

7.07

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 278
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 80
AciI CCGC 3 cut(s) 175, 288, 383
AclWI GGATC 3 cut(s) 433, 494, 988
AcoI YGGCCR 1 cut(s) 456
AcuI CTGAAG 2 cut(s) 30, 924
AfaI GTAC 3 cut(s) 49, 82, 181
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 4 cut(s) 731, 770, 977, 988
AjnI CCWGG 2 cut(s) 136, 807
AjuI GAANNNNNNNTTGG 2 cut(s) 1061, 1093
AluBI AGCT 7 cut(s) 45, 190, 274, 300, 407, 595, 845
AluI AGCT 7 cut(s) 45, 190, 274, 300, 407, 595, 845
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 3 cut(s) 337, 688, 884
AlwI GGATC 3 cut(s) 433, 494, 988
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 4 cut(s) 160, 261, 456, 866
ApeKI GCWGC 9 cut(s) 187, 251, 274, 404, 551, 554, 845, 898, 908
ArsI GACNNNNNNTTYG 2 cut(s) 406, 438
Asp718I GGTACC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 161, 1065
AsuHPI GGTGA 3 cut(s) 274, 678, 1040
AsuII TTCGAA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 1065
AxyI CCTNAGG 2 cut(s) 54, 504
BaeI ACNNNNGTAYC 4 cut(s) 163, 192, 196, 225
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 767
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 9 cut(s) 199, 238, 261, 416, 538, 541, 832, 885, 895
BccI CCATC 1 cut(s) 697
BceAI ACGGC 1 cut(s) 443
BciT130I CCWGG 2 cut(s) 138, 809
BcoDI GTCTC 3 cut(s) 337, 688, 884
BfaI CTAG 3 cut(s) 42, 579, 755
BfmI CTRYAG 1 cut(s) 870
BglII AGATCT 1 cut(s) 943
BisI GCNGC 9 cut(s) 188, 252, 275, 405, 552, 555, 846, 899, 909
BlsI GCNGC 9 cut(s) 189, 253, 276, 406, 553, 556, 847, 900, 910
Bme1390I CCNGG 2 cut(s) 138, 809
Bme18I GGWCC 1 cut(s) 1065
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 2 cut(s) 161, 1065
BmiI GGNNCC 2 cut(s) 16, 82
BmrFI CCNGG 2 cut(s) 138, 809
BmsI GCATC 4 cut(s) 226, 288, 457, 1021
BpiI GAAGAC 1 cut(s) 767
BpmI CTGGAG 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 847
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse118I RCCGGY 1 cut(s) 696
Bse21I CCTNAGG 2 cut(s) 54, 504
BseBI CCWGG 2 cut(s) 138, 809
BseGI GGATG 3 cut(s) 137, 379, 817
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 2 cut(s) 377, 879
BseRI GAGGAG 1 cut(s) 292
BseXI GCAGC 9 cut(s) 199, 238, 261, 416, 538, 541, 832, 885, 895
BsgI GTGCAG 2 cut(s) 173, 884
BshFI GGCC 4 cut(s) 162, 263, 458, 868
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 597
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 697
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 3 cut(s) 337, 688, 884
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 4 cut(s) 162, 263, 458, 868
BsoBI CYCGRG 1 cut(s) 336
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 597
Bsp1407I TGTACA 1 cut(s) 47
Bsp143I GATC 5 cut(s) 438, 499, 858, 943, 980
BspACI CCGC 3 cut(s) 175, 288, 383
BspANI GGCC 4 cut(s) 162, 263, 458, 868
BspCNI CTCAG 2 cut(s) 378, 880
BspLI GGNNCC 2 cut(s) 16, 82
BspPI GGATC 3 cut(s) 433, 494, 988
BspT104I TTCGAA 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 696
BsrGI TGTACA 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 696
BssMI GATC 5 cut(s) 438, 499, 858, 943, 980
Bst2UI CCWGG 2 cut(s) 138, 809
Bst4CI ACNGT 4 cut(s) 31, 205, 747, 766
Bst6I CTCTTC 3 cut(s) 312, 354, 381
BstAUI TGTACA 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 91, 433
BstDEI CTNAG 6 cut(s) 54, 265, 386, 476, 504, 888
BstF5I GGATG 3 cut(s) 137, 379, 817
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 5 cut(s) 441, 502, 861, 946, 983
BstMAI GTCTC 3 cut(s) 337, 688, 884
BstMBI GATC 5 cut(s) 438, 499, 858, 943, 980
BstMWI GCNNNNNNNGC 3 cut(s) 174, 260, 1040
BstNI CCWGG 2 cut(s) 138, 809
BstSCI CCNGG 2 cut(s) 136, 807
BstSFI CTRYAG 1 cut(s) 870
BstV1I GCAGC 9 cut(s) 199, 238, 261, 416, 538, 541, 832, 885, 895
BstV2I GAAGAC 1 cut(s) 767
BstX2I RGATCY 2 cut(s) 943, 980
BstXI CCANNNNNNTGG 2 cut(s) 77, 318
BstYI RGATCY 2 cut(s) 943, 980
Bsu36I CCTNAGG 2 cut(s) 54, 504
BsuRI GGCC 4 cut(s) 162, 263, 458, 868
BtsCI GGATG 3 cut(s) 137, 379, 817
Cac8I GCNNGC 2 cut(s) 91, 433
CfoI GCGC 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 696
Cfr13I GGNCC 2 cut(s) 161, 1065
Csp6I GTAC 3 cut(s) 48, 81, 180
CviAII CATG 5 cut(s) 101, 113, 318, 953, 1059
CviQI GTAC 3 cut(s) 48, 81, 180
DdeI CTNAG 6 cut(s) 54, 265, 386, 476, 504, 888
DpnI GATC 5 cut(s) 440, 501, 860, 945, 982
DpnII GATC 5 cut(s) 438, 499, 858, 943, 980
DraI TTTAAA 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 3 cut(s) 312, 354, 381
EarI CTCTTC 3 cut(s) 312, 354, 381
Ecl136II GAGCTC 1 cut(s) 595
Eco147I AGGCCT 1 cut(s) 868
Eco24I GRGCYC 1 cut(s) 597
Eco32I GATATC 1 cut(s) 1021
Eco47I GGWCC 1 cut(s) 1065
Eco53kI GAGCTC 1 cut(s) 595
Eco57I CTGAAG 2 cut(s) 30, 924
Eco81I CCTNAGG 2 cut(s) 54, 504
Eco88I CYCGRG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 595
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 136, 807
EcoRV GATATC 1 cut(s) 1021
EcoT38I GRGCYC 1 cut(s) 597
FaeI CATG 5 cut(s) 104, 116, 321, 956, 1062
FalI AAGNNNNNCTT 4 cut(s) 351, 383, 411, 443
FatI CATG 5 cut(s) 100, 112, 317, 952, 1058
FauI CCCGC 1 cut(s) 295
FauNDI CATATG 1 cut(s) 538
Fnu4HI GCNGC 9 cut(s) 188, 252, 275, 405, 552, 555, 846, 899, 909
FokI GGATG 3 cut(s) 144, 366, 824
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 9 cut(s) 188, 252, 275, 405, 552, 555, 846, 899, 909
FspBI CTAG 3 cut(s) 42, 579, 755
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 1 cut(s) 278
GluI GCNGC 9 cut(s) 188, 252, 275, 405, 552, 555, 846, 899, 909
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 4 cut(s) 162, 263, 458, 868
HapII CCGG 1 cut(s) 697
HhaI GCGC 1 cut(s) 279
Hin1II CATG 5 cut(s) 104, 116, 321, 956, 1062
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 2 cut(s) 116, 216
HpaII CCGG 1 cut(s) 697
HphI GGTGA 3 cut(s) 274, 678, 1040
Hpy166II GTNNAC 2 cut(s) 50, 752
Hpy188I TCNGA 5 cut(s) 358, 586, 673, 889, 943
Hpy188III TCNNGA 9 cut(s) 194, 213, 311, 526, 567, 598, 626, 713, 1016
Hpy8I GTNNAC 2 cut(s) 50, 752
HpyAV CCTTC 4 cut(s) 5, 413, 532, 971
HpyCH4III ACNGT 4 cut(s) 31, 205, 747, 766
HpyCH4V TGCA 8 cut(s) 112, 154, 187, 412, 470, 821, 901, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 260, 1040
HpyF3I CTNAG 6 cut(s) 54, 265, 386, 476, 504, 888
Hsp92II CATG 5 cut(s) 104, 116, 321, 956, 1062
HspAI GCGC 1 cut(s) 277
KpnI GGTACC 1 cut(s) 84
Kzo9I GATC 5 cut(s) 438, 499, 858, 943, 980
LmnI GCTCC 3 cut(s) 14, 305, 916
Lsp1109I GCAGC 9 cut(s) 199, 238, 261, 416, 538, 541, 832, 885, 895
LweI GCATC 4 cut(s) 226, 288, 457, 1021
MaeI CTAG 3 cut(s) 42, 579, 755
MaeIII GTNAC 2 cut(s) 25, 1001
MalI GATC 5 cut(s) 440, 501, 860, 945, 982
MboI GATC 5 cut(s) 438, 499, 858, 943, 980
MflI RGATCY 2 cut(s) 943, 980
MhlI GDGCHC 1 cut(s) 597
MluCI AATT 7 cut(s) 198, 257, 560, 630, 667, 675, 777
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 2 cut(s) 819, 909
MnlI CCTC 8 cut(s) 28, 97, 313, 540, 600, 633, 895, 1056
MseI TTAA 2 cut(s) 222, 783
MspA1I CMGCKG 2 cut(s) 177, 385
MspI CCGG 1 cut(s) 697
MspR9I CCNGG 2 cut(s) 138, 809
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 2 cut(s) 138, 809
MwoI GCNNNNNNNGC 3 cut(s) 174, 260, 1040
NdeI CATATG 1 cut(s) 538
NdeII GATC 5 cut(s) 438, 499, 858, 943, 980
NlaIII CATG 5 cut(s) 104, 116, 321, 956, 1062
NlaIV GGNNCC 2 cut(s) 16, 82
NmuCI GTSAC 1 cut(s) 25
NsbI TGCGCA 1 cut(s) 278
NspV TTCGAA 1 cut(s) 34
PceI AGGCCT 1 cut(s) 868
PctI GAATGC 1 cut(s) 994
PfeI GAWTC 1 cut(s) 216
PfoI TCCNGGA 2 cut(s) 136, 807
PkrI GCNGC 9 cut(s) 189, 253, 276, 406, 553, 556, 847, 900, 910
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 597
Psp6I CCWGG 2 cut(s) 136, 807
PspGI CCWGG 2 cut(s) 136, 807
PspN4I GGNNCC 2 cut(s) 16, 82
PspPI GGNCC 2 cut(s) 161, 1065
PsuI RGATCY 2 cut(s) 943, 980
RsaI GTAC 3 cut(s) 49, 82, 181
RsaNI GTAC 3 cut(s) 48, 81, 180
SacI GAGCTC 1 cut(s) 597
SaqAI TTAA 2 cut(s) 222, 783
SatI GCNGC 9 cut(s) 188, 252, 275, 405, 552, 555, 846, 899, 909
Sau3AI GATC 5 cut(s) 438, 499, 858, 943, 980
Sau96I GGNCC 2 cut(s) 161, 1065
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 138, 809
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 4 cut(s) 226, 288, 457, 1021
SfcI CTRYAG 1 cut(s) 870
SfuI TTCGAA 1 cut(s) 34
SinI GGWCC 1 cut(s) 1065
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
Sse9I AATT 7 cut(s) 198, 257, 560, 630, 667, 675, 777
SseBI AGGCCT 1 cut(s) 868
SsiI CCGC 3 cut(s) 175, 288, 383
SspI AATATT 1 cut(s) 347
SspMI CTAG 3 cut(s) 42, 579, 755
SstI GAGCTC 1 cut(s) 597
StuI AGGCCT 1 cut(s) 868
StyD4I CCNGG 2 cut(s) 136, 807
TaaI ACNGT 4 cut(s) 31, 205, 747, 766
TaqI TCGA 1 cut(s) 34
TasI AATT 7 cut(s) 198, 257, 560, 630, 667, 675, 777
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 2 cut(s) 222, 783
Tru9I TTAA 2 cut(s) 222, 783
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 9 cut(s) 187, 251, 274, 404, 551, 554, 845, 898, 908
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 4 cut(s) 360, 368, 941, 1098
VpaK11BI GGWCC 1 cut(s) 1065
XspI CTAG 3 cut(s) 42, 579, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.