Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002993

Physical Location & Seq

Genomic Coordinates Reverse (-)

82653829 .. 82660266

Gene Structure 6438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCTTGCCTTATTGTCTTCAAAAACCTGCTGCTTGGAGTACACCATAAGGTTGTTGCGGGTAACAGAACCCTTGGAGGACAGAATGGAGCAGGCCTTGTTCAGCCCTCCACTTTCAAAACAGCGAGTGGAATATGCAGTGCAAAGCATCAAAGAATCTTGTGCTACTACTTTGGTTGACTTTGGATGTGGCTCTGGTAGTTTGTTGGATTCCTTATTAAATTATCCAACTTCTCTGGAAAAAATTGCTGGTGTTGATCTTTCACAAAAGAGTCTTACCCGTGCGGCAAAGATACTTAATTCCAAATTAAACTCGACTTCAGATGCTGATACCTCATGTACACCCCTAAAATCTGCAATTCTTTATGATGGTTCGGTTATAGATCATGATTCTCGATTGTGTGGGTTTGATATAGGCACTTGCTTAGAGGTAATCGAGCATATGGAGGAAGATCAAGCACATCTCTTTGGCAATGTGGCATTGAGTTATTTCCGTCCTAAAATTCTCATTGTCTCGACGCCAAACTATGAATATAATGTCATACTCCAGAAGTCTACTTTATCAACCACAGAAGATGATGTTGATGAAAGAAATGAATCACAACCTTGTAAGTTTCGTAACCATGACCACAAGTTTGAGTGGACGAGAGCGCAGTTCAATTGCTGGGCAACTGAATTGGCCACCAGGCACAACTACAGTGTTGAGTTCAGTGGGGTTGGTGGATCTGGTGATGAACCAGGTTTTGCTTCCCAGATTGCTGTCTTCAGACGGAGAGCCATACCTCAGGAAGGTTATCCTGAAGAACTCTCGGATTCGGAACATCGTTACCAAGTCATATGGGAATGGACTAGTAGCGATAGGTCAAGATGTTATGAAATCCTGTCTAAATGGTTTTCCTGTTTCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001510 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0009451 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009653 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010093 GO:0010305 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016740 GO:0016741 GO:0019222 GO:0022414 GO:0031047 GO:0031050 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035279 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048519 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0098542 GO:0098586 GO:0098795 GO:0099402 GO:0140098 GO:1901360 GO:1901698 GO:1901699 GO:1905392 GO:1905393 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C Methyltransf_11 Methyltransf_12 Methyltransf_31 dsrm

Protein Analysis

302

Amino Acids

34.11

Weight (kDa)

5.05

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	57 - 210	2e-06	Methyltransferase domain
Methyltransf_12	PF08242	59 - 159	4.7e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20910 AT4G20910 AT4G20920 AT4G20920 AT4G20920 AT4G20920 AT4G20920
fragaria_vesca	FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230 FvH4_3g10230
malus_domestica	MD05G1271600.v1.1 MD10G1252200.v1.1
prunus_persica	Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1 Prupe.4G091400_v2.0.a1
pyrus_communis	pycom05g25390
rosa_chinensis	RchiOBHm_Chr5g0016471
rosa_laevigata	RLG00000032251
rosa_multiflora	Rmu_sc0001235.1_g000026 Rmu_sc0025842.1_g000001 Rmu_sc0030879.1_g000002
rosa_roxburghii	Rroxscaffold_1G00060430
rosa_rugosa	Rorug05G0032500 Rorug05G0032500
rosa_samantha	Rh5AG126200 Rh5BG125100 Rh5CG137500 Rh5DG125000
rosa_wichuraiana	Rw5G010940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	554
AciI	CCGC	2 cut(s)	58, 284
AclWI	GGATC	1 cut(s)	730
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	3 cut(s)	303, 748, 819
AcyI	GRCGYC	1 cut(s)	518
AfaI	GTAC	2 cut(s)	41, 340
AfiI	CCNNNNNNNGG	1 cut(s)	788
AgsI	TTSAA	3 cut(s)	21, 117, 658
AhlI	ACTAGT	1 cut(s)	848
AjnI	CCWGG	2 cut(s)	683, 736
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	730
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	93, 678
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	501
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AspLEI	GCGC	1 cut(s)	652
AsuHPI	GGTGA	1 cut(s)	740
AxyI	CCTNAGG	1 cut(s)	783
BalI	TGGCCA	1 cut(s)	680
BbsI	GAAGAC	2 cut(s)	9, 754
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	685, 738
BcoDI	GTCTC	1 cut(s)	517
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	1 cut(s)	849
BfmI	CTRYAG	1 cut(s)	694
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	2 cut(s)	31, 285
BlsI	GCNGC	2 cut(s)	32, 286
Bme1390I	CCNGG	2 cut(s)	685, 738
BmrFI	CCNGG	2 cut(s)	685, 738
BmsI	GCATC	2 cut(s)	156, 313
BpiI	GAAGAC	2 cut(s)	9, 754
BpmI	CTGGAG	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	788
Bse21I	CCTNAGG	1 cut(s)	783
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	685, 738
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	788
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	797
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	663
BshFI	GGCC	2 cut(s)	95, 680
BslI	CCNNNNNNNGG	1 cut(s)	788
BsmAI	GTCTC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	95, 680
Bsp1407I	TGTACA	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	256, 382, 451, 722
BspACI	CCGC	2 cut(s)	58, 284
BspANI	GGCC	2 cut(s)	95, 680
BspCNI	CTCAG	1 cut(s)	796
BspHI	TCATGA	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	4 cut(s)	256, 382, 451, 722
BssNI	GRCGYC	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	685, 738
Bst4CI	ACNGT	1 cut(s)	698
BstACI	GRCGYC	1 cut(s)	518
BstAUI	TGTACA	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	6, 93
BstDEI	CTNAG	2 cut(s)	424, 783
BstENI	CCTNNNNNAGG	1 cut(s)	786
BstF5I	GGATG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	4 cut(s)	259, 385, 454, 725
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	4 cut(s)	256, 382, 451, 722
BstNI	CCWGG	2 cut(s)	685, 738
BstSCI	CCNGG	2 cut(s)	683, 736
BstSFI	CTRYAG	1 cut(s)	694
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	9, 754
BstX2I	RGATCY	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	722
Bsu36I	CCTNAGG	1 cut(s)	783
BsuRI	GGCC	2 cut(s)	95, 680
BtsCI	GGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	3 cut(s)	144, 703, 715
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	6, 93
CaiI	CAGNNNCTG	1 cut(s)	326
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	652
CseI	GACGC	1 cut(s)	526
CsiI	ACCWGGT	1 cut(s)	736
Csp6I	GTAC	2 cut(s)	40, 339
CviAII	CATG	3 cut(s)	336, 386, 623
CviJI	RGCY	5 cut(s)	95, 105, 192, 680, 776
CviKI_1	RGCY	5 cut(s)	95, 105, 192, 680, 776
CviQI	GTAC	2 cut(s)	40, 339
DdeI	CTNAG	2 cut(s)	424, 783
DpnI	GATC	4 cut(s)	258, 384, 453, 724
DpnII	GATC	4 cut(s)	256, 382, 451, 722
EaeI	YGGCCR	1 cut(s)	678
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	3 cut(s)	303, 748, 819
Eco81I	CCTNAGG	1 cut(s)	783
EcoNI	CCTNNNNNAGG	1 cut(s)	786
EcoRII	CCWGG	2 cut(s)	683, 736
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	339, 389, 626
FatI	CATG	3 cut(s)	335, 385, 622
FauI	CCCGC	1 cut(s)	51
FauNDI	CATATG	2 cut(s)	441, 836
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	2 cut(s)	31, 285
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	31, 285
FspBI	CTAG	1 cut(s)	849
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	2 cut(s)	31, 285
GsaI	CCCAGC	1 cut(s)	667
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	2 cut(s)	95, 680
HgaI	GACGC	1 cut(s)	526
HhaI	GCGC	1 cut(s)	652
Hin1I	GRCGYC	1 cut(s)	518
Hin1II	CATG	3 cut(s)	339, 389, 626
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	6 cut(s)	155, 209, 271, 389, 596, 812
HphI	GGTGA	1 cut(s)	740
Hpy166II	GTNNAC	5 cut(s)	42, 178, 341, 555, 642
Hpy188I	TCNGA	5 cut(s)	322, 767, 811, 817, 905
Hpy188III	TCNNGA	8 cut(s)	236, 386, 393, 514, 547, 785, 797, 864
Hpy8I	GTNNAC	5 cut(s)	42, 178, 341, 555, 642
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	1 cut(s)	782
HpyCH4III	ACNGT	1 cut(s)	698
HpyCH4V	TGCA	3 cut(s)	137, 142, 356
HpyF3I	CTNAG	2 cut(s)	424, 783
Hsp92I	GRCGYC	1 cut(s)	518
Hsp92II	CATG	3 cut(s)	339, 389, 626
HspAI	GCGC	1 cut(s)	650
Kzo9I	GATC	4 cut(s)	256, 382, 451, 722
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	156, 313
MabI	ACCWGGT	1 cut(s)	736
MaeI	CTAG	1 cut(s)	849
MaeIII	GTNAC	3 cut(s)	61, 617, 824
MalI	GATC	4 cut(s)	258, 384, 453, 724
MboI	GATC	4 cut(s)	256, 382, 451, 722
MboII	GAAGA	5 cut(s)	9, 461, 584, 754, 812
MfeI	CAATTG	1 cut(s)	658
MflI	RGATCY	1 cut(s)	722
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	8 cut(s)	220, 243, 298, 305, 357, 501, 658, 674
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	2 cut(s)	186, 251
MnlI	CCTC	6 cut(s)	70, 117, 343, 421, 439, 792
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	3 cut(s)	218, 297, 308
Msp20I	TGGCCA	1 cut(s)	680
MspR9I	CCNGG	2 cut(s)	685, 738
MunI	CAATTG	1 cut(s)	658
MvaI	CCWGG	2 cut(s)	685, 738
NdeI	CATATG	2 cut(s)	441, 836
NdeII	GATC	4 cut(s)	256, 382, 451, 722
NlaIII	CATG	3 cut(s)	339, 389, 626
PagI	TCATGA	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	95
PfeI	GAWTC	5 cut(s)	155, 209, 389, 596, 812
PkrI	GCNGC	2 cut(s)	32, 286
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	683, 736
PspFI	CCCAGC	1 cut(s)	663
PspGI	CCWGG	2 cut(s)	683, 736
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	722
RsaI	GTAC	2 cut(s)	41, 340
RsaNI	GTAC	2 cut(s)	40, 339
SaqAI	TTAA	3 cut(s)	218, 297, 308
SatI	GCNGC	2 cut(s)	31, 285
Sau3AI	GATC	4 cut(s)	256, 382, 451, 722
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	685, 738
SetI	ASST	9 cut(s)	29, 53, 335, 432, 607, 742, 784, 793, 863
SexAI	ACCWGGT	1 cut(s)	736
SfaNI	GCATC	2 cut(s)	156, 313
SfcI	CTRYAG	1 cut(s)	694
SpeI	ACTAGT	1 cut(s)	848
Sse9I	AATT	8 cut(s)	220, 243, 298, 305, 357, 501, 658, 674
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	58, 284
SspMI	CTAG	1 cut(s)	849
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	683, 736
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	698
TaqI	TCGA	4 cut(s)	314, 394, 435, 515
TasI	AATT	8 cut(s)	220, 243, 298, 305, 357, 501, 658, 674
TatI	WGTACW	2 cut(s)	39, 338
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	5 cut(s)	155, 209, 389, 596, 812
Tru1I	TTAA	3 cut(s)	218, 297, 308
Tru9I	TTAA	3 cut(s)	218, 297, 308
TscAI	CASTG	3 cut(s)	144, 703, 715
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	5 cut(s)	543, 600, 609, 747, 888
TspGWI	ACGGA	2 cut(s)	482, 784
TspRI	CASTG	3 cut(s)	144, 703, 715
XagI	CCTNNNNNAGG	1 cut(s)	786
XapI	RAATTY	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	554
XspI	CTAG	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.