AT4G21770

Pseudouridine synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
11563517 .. 11566377
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21770.1

Sequence Viewer

Length: 1419 bp
ATGGCTTCGCCGGCGTTAACCGGCGGTTACCGGAACCTCACTGCGCCGGTATCTCTCCTGCGTACTTTAGCGTCCACCCGTGTCACTACTCCATTGTTTCGTTCCAACAAACACTCTCCACGTTTCATTTCTTCTCCAAAGAGATTCACTTGCTTGTCCTTACTCAAAACCGATTCTCAAAATCAAACCACACTCTCTTCTTCTTCCAATTCTGGATACCATGAATACAATCGATTGATGCCATGTCCTGCATATAATCTTCCACCAAGAATTGAACATATGGTTGTGTTAGAAGACGACGTTCTTGTATCTGAGTTTATCTCTAAACAATTAGATCTTCCTCCTTTATATGTTGCAGATCTTATTCGATTTGGAGCTGTACATTACGCTCTTGTATGTCCTAAACCTCCACCAACTGCGACTCCTGAGGAAATTATACTGTTTGAAGAAGTAACCTCTCCTTCTGTACTAAAGAAGAGATCTTCTATTAAAGGAAAAACTGTTAGAGAAGCTCAGAAAACGTTTCGTGTGACTCATACCAATCAGTATGCTGAAGCTGGAACTTATTTGCGTGTTCATGTTCACCCGAAACGTTCTCCAAGGTGTTATGAAATTGATTGGAAGTCACGGATTGTTGCTGTGACTGACTCTTATGTCATTTTGGATAAACCTGCCGGGACTACGGTTGGGGGCACGACGGATAACATCGAAGAGAGCTGTGCTACATTTGCCTCACGTGCATTGGATTTACCAGAACCACTGAAAACAACGCATCAGATTGATAACTGTACAGAAGGCTGTGTCGTCTTTGCTAGAACAAAAGAGTACTGCTCGGTCTTCCACACAAAAATAAGAAATAAAGAAGTGAAGAAACTATATCGTGCTCTTGCTGCGGCACCTCTTCCCATTGGAATTATCTCACATTATATGCGCCCAAAAAATATGGCTCCAAGACTCGTAGCCGAAGATTCAATTCAAGGCTGGCACTTGTGTCAACTTGAGGTTTTAGAATGTAAGAAGATTCCTTGGCCCGATGCAGCTACTGAGAAGAAACACGATATTGAAGACTGTGGATGGACTTCAAAAGAGTTTGCTTATGAGTGTACAATAAACCTTTTAACAGGCAAGACTCACCAGATCCGGGCCCAGCTTGCAGCTTGTGGGGCACCGTTGGTTGGTGACTCTATGTACATGCCAGCAGCGATTGCAGAAATGGGGAATCCTGATACCAACCCGTATGGGAAAGCAAAGAAACATTACACAATGGAGGAGAACCAAAAGGAAACCGCTGTTGCCGAATGGATTGATAGACATGGCAAGGAACCGAGGGTAGGAATCGGTCTTCAAGCTTGTCAAATCTCATGGGACGATGATGATGGCGAGCACTTCTATGAAGCTGGGACTCCATGGTGGAGATGA

Protein Analysis

472

Amino Acids

52.94

Weight (kDa)

8.1

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PseudoU_synth_2 PF00849 218 - 386 6.7e-30 RNA pseudouridylate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011077)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
Acc36I ACCTGC 1 cut(s) 679
AccB1I GGYRCC 2 cut(s) 895, 1165
AciI CCGC 3 cut(s) 24, 893, 1287
AclI AACGTT 2 cut(s) 521, 592
AclWI GGATC 1 cut(s) 1132
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 737
AfaI GTAC 7 cut(s) 64, 381, 468, 790, 827, 1105, 1190
AfiI CCNNNNNNNGG 3 cut(s) 1141, 1175, 1331
AgsI TTSAA 7 cut(s) 275, 446, 972, 977, 1064, 1083, 1346
AluBI AGCT 9 cut(s) 377, 512, 557, 717, 1040, 1150, 1157, 1349, 1397
AluI AGCT 9 cut(s) 377, 512, 557, 717, 1040, 1150, 1157, 1349, 1397
Alw21I GWGCWC 2 cut(s) 886, 1386
AlwI GGATC 1 cut(s) 1132
AlwNI CAGNNNCTG 1 cut(s) 1043
AoxI GGCC 2 cut(s) 1028, 1143
ApaI GGGCCC 1 cut(s) 1147
ApeKI GCWGC 4 cut(s) 890, 1037, 1154, 1199
AspLEI GCGC 2 cut(s) 46, 933
AspS9I GGNCC 3 cut(s) 1029, 1143, 1144
AsuC2I CCSGG 2 cut(s) 676, 1142
AsuHPI GGTGA 3 cut(s) 575, 1124, 1190
AxyI CCTNAGG 1 cut(s) 426
BaeGI GKGCMC 3 cut(s) 695, 1147, 1168
BanI GGYRCC 2 cut(s) 895, 1165
BanII GRGCYC 1 cut(s) 1147
BbrPI CACGTG 1 cut(s) 737
BbsI GAAGAC 4 cut(s) 300, 829, 1071, 1334
Bbv12I GWGCWC 2 cut(s) 886, 1386
BbvI GCAGC 4 cut(s) 877, 1049, 1166, 1211
BccI CCATC 2 cut(s) 1068, 1370
BciVI GTATCC 1 cut(s) 209
BcnI CCSGG 2 cut(s) 676, 1142
BfaI CTAG 1 cut(s) 813
BfuAI ACCTGC 1 cut(s) 679
BfuI GTATCC 1 cut(s) 209
BglII AGATCT 3 cut(s) 334, 358, 479
BisI GCNGC 5 cut(s) 891, 894, 1038, 1155, 1200
BlsI GCNGC 5 cut(s) 892, 895, 1039, 1156, 1201
BmcAI AGTACT 1 cut(s) 827
Bme1390I CCNGG 2 cut(s) 676, 1142
BmgT120I GGNCC 3 cut(s) 1029, 1143, 1144
BmiI GGNNCC 6 cut(s) 35, 897, 948, 1145, 1167, 1323
BmrFI CCNGG 2 cut(s) 676, 1142
BmsI GCATC 3 cut(s) 228, 781, 1024
BpiI GAAGAC 4 cut(s) 300, 829, 1071, 1334
BplI GAGNNNNNCTC 4 cut(s) 305, 337, 815, 847
BpuEI CTTGAG 1 cut(s) 1019
BpuMI CCSGG 2 cut(s) 676, 1142
Bsa29I ATCGAT 1 cut(s) 232
BsaAI YACGTR 1 cut(s) 737
BsaJI CCNNGG 4 cut(s) 599, 1025, 1325, 1406
BsaWI WCCGGW 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bsc4I CCNNNNNNNGG 3 cut(s) 1141, 1175, 1331
Bse118I RCCGGY 3 cut(s) 10, 20, 46
Bse21I CCTNAGG 1 cut(s) 426
BseCI ATCGAT 1 cut(s) 232
BseDI CCNNGG 4 cut(s) 599, 1025, 1325, 1406
BseGI GGATG 1 cut(s) 1079
BseLI CCNNNNNNNGG 3 cut(s) 1141, 1175, 1331
BseMII CTCAG 4 cut(s) 303, 417, 527, 1035
BseRI GAGGAG 1 cut(s) 1283
BseSI GKGCMC 3 cut(s) 695, 1147, 1168
BseXI GCAGC 4 cut(s) 877, 1049, 1166, 1211
BseYI CCCAGC 2 cut(s) 1146, 1397
BshFI GGCC 2 cut(s) 1030, 1145
BshNI GGYRCC 2 cut(s) 895, 1165
BshVI ATCGAT 1 cut(s) 232
BsiHKAI GWGCWC 2 cut(s) 886, 1386
BsiSI CCGG 6 cut(s) 11, 21, 31, 47, 675, 1141
BslFI GGGAC 3 cut(s) 691, 1379, 1414
BslI CCNNNNNNNGG 3 cut(s) 1141, 1175, 1331
BsmFI GGGAC 3 cut(s) 691, 1379, 1414
BsnI GGCC 2 cut(s) 1030, 1145
Bsp120I GGGCCC 1 cut(s) 1143
Bsp1286I GDGCHC 5 cut(s) 695, 886, 1147, 1168, 1386
Bsp1407I TGTACA 4 cut(s) 379, 788, 1103, 1188
Bsp143I GATC 4 cut(s) 334, 358, 479, 1137
Bsp19I CCATGG 1 cut(s) 1406
BspACI CCGC 3 cut(s) 24, 893, 1287
BspANI GGCC 2 cut(s) 1030, 1145
BspCNI CTCAG 4 cut(s) 304, 418, 526, 1036
BspDI ATCGAT 1 cut(s) 232
BspLI GGNNCC 6 cut(s) 35, 897, 948, 1145, 1167, 1323
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 1 cut(s) 1132
BspT107I GGYRCC 2 cut(s) 895, 1165
BsrFI RCCGGY 3 cut(s) 10, 20, 46
BsrGI TGTACA 4 cut(s) 379, 788, 1103, 1188
BssAI RCCGGY 3 cut(s) 10, 20, 46
BssECI CCNNGG 4 cut(s) 599, 1025, 1325, 1406
BssMI GATC 4 cut(s) 334, 358, 479, 1137
BssT1I CCWWGG 3 cut(s) 599, 1025, 1406
Bst4CI ACNGT 6 cut(s) 441, 502, 685, 788, 1070, 1170
Bst6I CTCTTC 4 cut(s) 202, 470, 705, 906
BstAPI GCANNNNNTGC 1 cut(s) 1205
BstAUI TGTACA 4 cut(s) 379, 788, 1103, 1188
BstBAI YACGTR 1 cut(s) 737
BstC8I GCNNGC 5 cut(s) 12, 983, 1152, 1197, 1382
BstDEI CTNAG 4 cut(s) 312, 426, 513, 1044
BstDSI CCRYGG 1 cut(s) 1406
BstEII GGTNACC 1 cut(s) 26
BstF5I GGATG 1 cut(s) 1079
BstHHI GCGC 2 cut(s) 46, 933
BstKTI GATC 4 cut(s) 337, 361, 482, 1140
BstMBI GATC 4 cut(s) 334, 358, 479, 1137
BstMWI GCNNNNNNNGC 7 cut(s) 11, 728, 737, 890, 1151, 1163, 1205
BstNSI RCATGY 1 cut(s) 1195
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 674, 1140
BstSLI GKGCMC 3 cut(s) 695, 1147, 1168
BstV1I GCAGC 4 cut(s) 877, 1049, 1166, 1211
BstV2I GAAGAC 4 cut(s) 300, 829, 1071, 1334
BstX2I RGATCY 4 cut(s) 334, 358, 479, 1137
BstYI RGATCY 4 cut(s) 334, 358, 479, 1137
Bsu15I ATCGAT 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 426
BsuI GTATCC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 1030, 1145
BsuTUI ATCGAT 1 cut(s) 232
BtgI CCRYGG 1 cut(s) 1406
BtsCI GGATG 1 cut(s) 1079
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 758
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 5 cut(s) 12, 983, 1152, 1197, 1382
CaiI CAGNNNCTG 1 cut(s) 1043
CfoI GCGC 2 cut(s) 46, 933
Cfr10I RCCGGY 3 cut(s) 10, 20, 46
Cfr13I GGNCC 3 cut(s) 1029, 1143, 1144
ClaI ATCGAT 1 cut(s) 232
CseI GACGC 1 cut(s) 60
Csp6I GTAC 7 cut(s) 63, 380, 467, 789, 826, 1104, 1189
CviAII CATG 7 cut(s) 221, 243, 578, 1192, 1313, 1362, 1407
CviQI GTAC 7 cut(s) 63, 380, 467, 789, 826, 1104, 1189
DdeI CTNAG 4 cut(s) 312, 426, 513, 1044
DpnI GATC 4 cut(s) 336, 360, 481, 1139
DpnII GATC 4 cut(s) 334, 358, 479, 1137
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 4 cut(s) 202, 470, 705, 906
EarI CTCTTC 4 cut(s) 202, 470, 705, 906
Eco130I CCWWGG 3 cut(s) 599, 1025, 1406
Eco24I GRGCYC 1 cut(s) 1147
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 737
Eco81I CCTNAGG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
EcoT14I CCWWGG 3 cut(s) 599, 1025, 1406
EcoT38I GRGCYC 1 cut(s) 1147
ErhI CCWWGG 3 cut(s) 599, 1025, 1406
FaeI CATG 7 cut(s) 224, 246, 581, 1195, 1316, 1365, 1410
FaqI GGGAC 3 cut(s) 691, 1379, 1414
FatI CATG 7 cut(s) 220, 242, 577, 1191, 1312, 1361, 1406
FauNDI CATATG 1 cut(s) 279
Fnu4HI GCNGC 5 cut(s) 891, 894, 1038, 1155, 1200
FokI GGATG 1 cut(s) 1086
FriOI GRGCYC 1 cut(s) 1147
Fsp4HI GCNGC 5 cut(s) 891, 894, 1038, 1155, 1200
FspBI CTAG 1 cut(s) 813
GlaI GCGC 2 cut(s) 45, 932
GluI GCNGC 5 cut(s) 891, 894, 1038, 1155, 1200
GsaI CCCAGC 2 cut(s) 1150, 1401
HaeIII GGCC 2 cut(s) 1030, 1145
HapII CCGG 6 cut(s) 11, 21, 31, 47, 675, 1141
HgaI GACGC 1 cut(s) 60
HhaI GCGC 2 cut(s) 46, 933
Hin1II CATG 7 cut(s) 224, 246, 581, 1195, 1316, 1365, 1410
Hin6I GCGC 2 cut(s) 44, 931
HinP1I GCGC 2 cut(s) 44, 931
HincII GTYRAC 2 cut(s) 18, 995
HindII GTYRAC 2 cut(s) 18, 995
HindIII AAGCTT 1 cut(s) 1347
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 6 cut(s) 11, 21, 31, 47, 675, 1141
HphI GGTGA 3 cut(s) 575, 1124, 1190
Hpy166II GTNNAC 5 cut(s) 18, 75, 583, 995, 1104
Hpy188I TCNGA 3 cut(s) 313, 516, 777
Hpy188III TCNNGA 3 cut(s) 213, 425, 1223
Hpy8I GTNNAC 5 cut(s) 18, 75, 583, 995, 1104
Hpy99I CGWCG 2 cut(s) 302, 700
HpyAV CCTTC 2 cut(s) 471, 788
HpyCH4III ACNGT 6 cut(s) 441, 502, 685, 788, 1070, 1170
HpyCH4IV ACGT 5 cut(s) 121, 300, 521, 592, 736
HpyCH4V TGCA 6 cut(s) 251, 356, 740, 1037, 1154, 1208
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 728, 737, 890, 1151, 1163, 1205
HpyF3I CTNAG 4 cut(s) 312, 426, 513, 1044
HpySE526I ACGT 5 cut(s) 121, 300, 521, 592, 736
Hsp92II CATG 7 cut(s) 224, 246, 581, 1195, 1316, 1365, 1410
HspAI GCGC 2 cut(s) 44, 931
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 4 cut(s) 334, 358, 479, 1137
LmnI GCTCC 2 cut(s) 374, 952
Lsp1109I GCAGC 4 cut(s) 877, 1049, 1166, 1211
LweI GCATC 3 cut(s) 228, 781, 1024
MaeI CTAG 1 cut(s) 813
MaeII ACGT 5 cut(s) 121, 300, 521, 592, 736
MaeIII GTNAC 7 cut(s) 26, 82, 451, 529, 624, 640, 1178
MalI GATC 4 cut(s) 336, 360, 481, 1139
MboI GATC 4 cut(s) 334, 358, 479, 1137
MflI RGATCY 4 cut(s) 334, 358, 479, 1137
MhlI GDGCHC 5 cut(s) 695, 886, 1147, 1168, 1386
MluCI AATT 7 cut(s) 208, 270, 329, 432, 612, 912, 972
MlyI GAGTC 7 cut(s) 415, 526, 641, 948, 1123, 1175, 1396
MmeI TCCRAC 1 cut(s) 129
MreI CGCCGGCG 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 10
MseI TTAA 3 cut(s) 17, 489, 1118
MslI CAYNNNNRTG 1 cut(s) 1389
MspA1I CMGCKG 1 cut(s) 1289
MspI CCGG 6 cut(s) 11, 21, 31, 47, 675, 1141
MspR9I CCNGG 2 cut(s) 676, 1142
MwoI GCNNNNNNNGC 7 cut(s) 11, 728, 737, 890, 1151, 1163, 1205
NaeI GCCGGC 1 cut(s) 12
NciI CCSGG 2 cut(s) 676, 1142
NcoI CCATGG 1 cut(s) 1406
NdeI CATATG 1 cut(s) 279
NdeII GATC 4 cut(s) 334, 358, 479, 1137
NgoMIV GCCGGC 1 cut(s) 10
NlaIII CATG 7 cut(s) 224, 246, 581, 1195, 1316, 1365, 1410
NlaIV GGNNCC 6 cut(s) 35, 897, 948, 1145, 1167, 1323
NmuCI GTSAC 5 cut(s) 82, 529, 624, 640, 1178
NspI RCATGY 1 cut(s) 1195
PdiI GCCGGC 1 cut(s) 12
PfeI GAWTC 6 cut(s) 144, 173, 968, 1021, 1219, 1335
PkrI GCNGC 5 cut(s) 892, 895, 1039, 1156, 1201
PleI GAGTC 7 cut(s) 415, 526, 641, 948, 1123, 1175, 1396
PmaCI CACGTG 1 cut(s) 737
PmlI CACGTG 1 cut(s) 737
PpsI GAGTC 7 cut(s) 415, 526, 641, 948, 1123, 1175, 1396
Ppu21I YACGTR 1 cut(s) 737
Psp1406I AACGTT 2 cut(s) 521, 592
PspCI CACGTG 1 cut(s) 737
PspEI GGTNACC 1 cut(s) 26
PspFI CCCAGC 2 cut(s) 1146, 1397
PspN4I GGNNCC 6 cut(s) 35, 897, 948, 1145, 1167, 1323
PspOMI GGGCCC 1 cut(s) 1143
PspPI GGNCC 3 cut(s) 1029, 1143, 1144
PstNI CAGNNNCTG 1 cut(s) 1043
PsuI RGATCY 4 cut(s) 334, 358, 479, 1137
RsaI GTAC 7 cut(s) 64, 381, 468, 790, 827, 1105, 1190
RsaNI GTAC 7 cut(s) 63, 380, 467, 789, 826, 1104, 1189
RseI CAYNNNNRTG 1 cut(s) 1389
SaqAI TTAA 3 cut(s) 17, 489, 1118
SatI GCNGC 5 cut(s) 891, 894, 1038, 1155, 1200
Sau3AI GATC 4 cut(s) 334, 358, 479, 1137
Sau96I GGNCC 3 cut(s) 1029, 1143, 1144
ScaI AGTACT 1 cut(s) 827
SchI GAGTC 7 cut(s) 415, 526, 641, 948, 1123, 1175, 1396
ScrFI CCNGG 2 cut(s) 676, 1142
SduI GDGCHC 5 cut(s) 695, 886, 1147, 1168, 1386
SfaNI GCATC 3 cut(s) 228, 781, 1024
SgrAI CRCCGGYG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 1389
SmlI CTYRAG 1 cut(s) 998
SmoI CTYRAG 1 cut(s) 998
Sse9I AATT 7 cut(s) 208, 270, 329, 432, 612, 912, 972
SsiI CCGC 3 cut(s) 24, 893, 1287
SspMI CTAG 1 cut(s) 813
StyD4I CCNGG 2 cut(s) 674, 1140
StyI CCWWGG 3 cut(s) 599, 1025, 1406
TaaI ACNGT 6 cut(s) 441, 502, 685, 788, 1070, 1170
TaiI ACGT 5 cut(s) 124, 303, 524, 595, 739
TaqI TCGA 3 cut(s) 232, 367, 708
TaqII GACCGA 2 cut(s) 823, 1328
TasI AATT 7 cut(s) 208, 270, 329, 432, 612, 912, 972
TatI WGTACW 6 cut(s) 379, 466, 788, 825, 1103, 1188
TauI GCSGC 1 cut(s) 896
TfiI GAWTC 6 cut(s) 144, 173, 968, 1021, 1219, 1335
Tru1I TTAA 3 cut(s) 17, 489, 1118
Tru9I TTAA 3 cut(s) 17, 489, 1118
TscAI CASTG 2 cut(s) 46, 765
TseFI GTSAC 5 cut(s) 82, 529, 624, 640, 1178
TseI GCWGC 4 cut(s) 890, 1037, 1154, 1199
Tsp45I GTSAC 5 cut(s) 82, 529, 624, 640, 1178
TspDTI ATGAA 5 cut(s) 115, 237, 566, 624, 1407
TspGWI ACGGA 2 cut(s) 643, 713
TspRI CASTG 2 cut(s) 46, 765
XceI RCATGY 1 cut(s) 1195
XspI CTAG 1 cut(s) 813
ZrmI AGTACT 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.